Sergiu Ivanov
|
f932841de3
|
example: Reference the section on TBN from standalone TBF.
|
2020-10-11 23:25:06 +02:00 |
|
Sergiu Ivanov
|
f06c5bc8ff
|
example: Start explaining tbf/state and TBN.
|
2020-10-11 23:22:37 +02:00 |
|
Sergiu Ivanov
|
63029af82f
|
example: Add Passing values between code blocks.
|
2020-07-20 23:57:16 +02:00 |
|
Sergiu Ivanov
|
0ac14e446c
|
example: Typo.
|
2020-07-20 18:05:03 +02:00 |
|
Sergiu Ivanov
|
e0329e2519
|
example: Add some text about SBFs.
|
2020-07-15 00:01:43 +02:00 |
|
Sergiu Ivanov
|
b1d9b5193e
|
example: Add the section on TBF.
|
2020-07-12 00:31:24 +02:00 |
|
Sergiu Ivanov
|
e654123a39
|
example: Illustrate tabulate*/boolean.
|
2020-05-31 23:42:16 +02:00 |
|
Sergiu Ivanov
|
45b7604c51
|
example: Fix the usage of tabulate.
|
2020-05-31 23:41:56 +02:00 |
|
Sergiu Ivanov
|
28a77d1e20
|
example: Mention dds/functions.
|
2020-05-28 00:30:27 +02:00 |
|
Sergiu Ivanov
|
1166132362
|
example: Fix the prologue to correctly require dds.
|
2020-05-23 23:52:32 +02:00 |
|
Sergiu Ivanov
|
76bff909e9
|
example: Reran some code blocks in the section on reaction systems.
|
2020-05-16 00:18:36 +02:00 |
|
Sergiu Ivanov
|
c5d2ff629c
|
Explain how to install dds locally and use shorter require statements.
|
2020-05-16 00:01:36 +02:00 |
|
Sergiu Ivanov
|
32b2e41634
|
example: Explain how to read back and explore networks from Org tables.
|
2020-05-08 23:33:43 +02:00 |
|
Sergiu Ivanov
|
cdca40eb40
|
example: Random networks: unorg -> unorgv.
|
2020-03-25 23:29:01 +01:00 |
|
Sergiu Ivanov
|
319b15d956
|
networks: Remove ppsg and ppsgb.
|
2020-03-25 23:15:37 +01:00 |
|
Sergiu Ivanov
|
e8e3a71d87
|
networks: Remove nn.
|
2020-03-25 23:05:28 +01:00 |
|
Sergiu Ivanov
|
dfb882d891
|
networks: Remove st and stb.
|
2020-03-25 00:31:23 +01:00 |
|
Sergiu Ivanov
|
a8a981098f
|
utils: unorg -> unorgv
|
2020-03-25 00:16:29 +01:00 |
|
Sergiu Ivanov
|
c4af42a2f6
|
example: Update a call to build-boolean-signed-interaction-graph.
|
2020-03-24 23:59:11 +01:00 |
|
Sergiu Ivanov
|
8bc2a582a6
|
utils: Remove sgfy.
|
2020-03-24 23:47:20 +01:00 |
|
Sergiu Ivanov
|
14688a9bae
|
rs: Remove macros, update example.
|
2020-03-24 23:22:20 +01:00 |
|
Sergiu Ivanov
|
b79bae9d67
|
example: Update the randomly generated network.
|
2020-03-22 21:03:20 +01:00 |
|
Sergiu Ivanov
|
b38bebb67b
|
example: Add some examples for random functions and networks.
|
2020-03-22 20:38:32 +01:00 |
|
Sergiu Ivanov
|
e7b35a451c
|
Add the example on tabulating Boolean networks.
|
2020-03-22 20:22:23 +01:00 |
|
Sergiu Ivanov
|
32d117a155
|
example: Network functions -> Tabulating functions and networks.
|
2020-03-22 19:36:07 +01:00 |
|
Sergiu Ivanov
|
572bef8a7b
|
networks: Add tabulate and illustrate it in example.
|
2020-03-15 16:12:35 +01:00 |
|
Sergiu Ivanov
|
f005d77516
|
example: Explain setting network variables to constants.
|
2020-03-04 23:51:11 +01:00 |
|
Sergiu Ivanov
|
f8dc65df0a
|
example: Promote Reaction Systems to top-level heading.
|
2020-03-04 18:21:20 +01:00 |
|
Sergiu Ivanov
|
2437dec620
|
example: Explain why states for reaction systems include full context sequences.
|
2020-03-03 01:03:33 +01:00 |
|
Sergiu Ivanov
|
cbdfdabe7a
|
example: Illustrate building interactive processes.
|
2020-03-03 01:01:21 +01:00 |
|
Sergiu Ivanov
|
0d73b33ff3
|
example: Some updates to the state graph of the reaction system.
|
2020-03-03 01:01:00 +01:00 |
|
Sergiu Ivanov
|
227dfff14a
|
example: Illustrate state graphs for reaction systems.
|
2020-03-03 00:25:26 +01:00 |
|
Sergiu Ivanov
|
c0d36a34a7
|
rs: Add read-ctx and illustrate it in example.org.
|
2020-03-02 23:11:26 +01:00 |
|
Sergiu Ivanov
|
a9fc272c13
|
example,munch-sexp: Rename the parameter tab -> sexp.
|
2020-03-02 18:38:39 +01:00 |
|
Sergiu Ivanov
|
e07c5c239c
|
example: munch-table -> munch-sexp.
This code block can be used to prepare any sexp Org-mode produces.
|
2020-03-02 18:36:26 +01:00 |
|
Sergiu Ivanov
|
db88987c13
|
example: Show how to apply reaction systems.
|
2020-03-01 21:14:18 +01:00 |
|
Sergiu Ivanov
|
77c0106ea2
|
rs: Add some functions for showing RS as Org tables.
Also add an example to example.org.
|
2020-03-01 21:10:01 +01:00 |
|
Sergiu Ivanov
|
d2121bd5e6
|
rs: Add unorg-rs and showcase it in example.org.
|
2020-03-01 20:26:16 +01:00 |
|
Sergiu Ivanov
|
007c5b96bf
|
example: Show what happens when multiple modalities cause the same state transition.
|
2020-03-01 18:01:53 +01:00 |
|
Sergiu Ivanov
|
02d564a374
|
example: Add an example on printing annotated state graphs for networks.
|
2020-03-01 15:22:11 +01:00 |
|
Sergiu Ivanov
|
e3a04cb765
|
example.org: Add examples of state graphs.
|
2020-02-26 21:17:11 +01:00 |
|
Sergiu Ivanov
|
9f4fae1437
|
example.org: Illustrate signed interaction graphs.
|
2020-02-23 10:14:32 +01:00 |
|
Sergiu Ivanov
|
511aa60c31
|
Show off some examples of Boolean networks.
|
2020-02-22 21:01:06 +01:00 |
|
Sergiu Ivanov
|
e8af2055e6
|
Add example.org and an accompanying picture.
|
2020-02-22 20:34:24 +01:00 |
|