example: Explain how to read back and explore networks from Org tables.
This commit is contained in:
Sergiu Ivanov
parent
036b9b7973
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@ -576,6 +576,82 @@ tab
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| #t | 2 | hot | #t | 1 | cold |
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:END:
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Let's snapshot this random network and give it a name.
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#+NAME: rnd-network
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| a | b | c | f-a | f-b | f-c |
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| #f | 1 | cold | #f | 2 | hot |
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| #f | 1 | hot | #f | 2 | cold |
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| #f | 2 | cold | #t | 1 | cold |
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| #f | 2 | hot | #t | 2 | hot |
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| #t | 1 | cold | #f | 2 | cold |
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| #t | 1 | hot | #t | 1 | cold |
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| #t | 2 | cold | #f | 2 | hot |
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| #t | 2 | hot | #t | 1 | cold |
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Here's how we can read back this table as a Boolean network:
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#+HEADER: :var rnd-network=munch-sexp(rnd-network)
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#+BEGIN_SRC racket :results output drawer
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(string->any rnd-network)
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#+END_SRC
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#+RESULTS:
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:RESULTS:
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'(("a" "b" "c" "f-a" "f-b" "f-c") ("#f" 1 "cold" "#f" 2 "hot") ("#f" 1 "hot" "#f" 2 "cold") ("#f" 2 "cold" "#t" 1 "cold") ("#f" 2 "hot" "#t" 2 "hot") ("#t" 1 "cold" "#f" 2 "cold") ("#t" 1 "hot" "#t" 1 "cold") ("#t" 2 "cold" "#f" 2 "hot") ("#t" 2 "hot" "#t" 1 "cold"))
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:END:
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You can use =table->network= to convert a table such as [[rnd-network][rnd-network]]
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to a network.
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#+HEADER: :var rnd-network=munch-sexp(rnd-network)
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#+BEGIN_SRC racket :results output drawer
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(table->network (unorg rnd-network))
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#+END_SRC
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#+RESULTS:
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:RESULTS:
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'#hash((a . #<procedure:...dds/networks.rkt:518:4>) (b . #<procedure:...dds/networks.rkt:518:4>) (c . #<procedure:...dds/networks.rkt:518:4>))
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:END:
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Here's the state graph of [[rnd-network][rnd-network]].
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#+NAME: rnd-network-sg
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#+HEADER: :var rnd-network=munch-sexp(rnd-network)
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#+HEADER: :var simple-domains=munch-sexp(simple-domains)
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#+BEGIN_SRC racket :results silent drawer
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(define n (table->network (unorg rnd-network)))
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(define rnd-asyn (make-asyn-dynamics n))
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(define states (list->set (build-all-states (unorgv simple-domains))))
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(dotit (pretty-print-state-graph (dds-build-state-graph-annotated rnd-asyn states)))
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#+END_SRC
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#+BEGIN_SRC dot :file dots/exampleHc023j.svg :results raw drawer :cmd sfdp :noweb yes
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<<rnd-network-sg()>>
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#+END_SRC
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#+RESULTS:
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:RESULTS:
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[[file:dots/exampleHc023j.svg]]
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:END:
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Here's the signed interaction graph of [[rnd-network][rnd-network]].
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#+NAME: rnd-network-ig
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#+HEADER: :var rnd-network=munch-sexp(rnd-network)
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#+HEADER: :var simple-domains=munch-sexp(simple-domains)
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#+BEGIN_SRC racket :results silent drawer
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(define n (table->network (unorg rnd-network)))
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(dotit (build-signed-interaction-graph n (unorgv simple-domains)))
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#+END_SRC
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#+BEGIN_SRC dot :file dots/examplePIN5ac.svg :results raw drawer :cmd sfdp :noweb yes
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<<rnd-network-ig()>>
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#+END_SRC
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#+RESULTS:
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:RESULTS:
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||||
[[file:dots/examplePIN5ac.svg]]
|
||||
:END:
|
||||
|
||||
Note that =build-signed-interaction-graph= only includes the + and
|
||||
the - arcs in the graph, as it does not have access to the symbolic
|
||||
description of the function.
|
||||
|
||||
* Reaction systems
|
||||
:PROPERTIES:
|
||||
|
|
|
|||
Loading…
Reference in New Issue