Sergiu Ivanov
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28a77d1e20
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example: Mention dds/functions.
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2020-05-28 00:30:27 +02:00 |
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Sergiu Ivanov
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1166132362
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example: Fix the prologue to correctly require dds.
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2020-05-23 23:52:32 +02:00 |
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Sergiu Ivanov
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76bff909e9
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example: Reran some code blocks in the section on reaction systems.
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2020-05-16 00:18:36 +02:00 |
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Sergiu Ivanov
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c5d2ff629c
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Explain how to install dds locally and use shorter require statements.
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2020-05-16 00:01:36 +02:00 |
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Sergiu Ivanov
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32b2e41634
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example: Explain how to read back and explore networks from Org tables.
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2020-05-08 23:33:43 +02:00 |
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Sergiu Ivanov
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cdca40eb40
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example: Random networks: unorg -> unorgv.
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2020-03-25 23:29:01 +01:00 |
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Sergiu Ivanov
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319b15d956
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networks: Remove ppsg and ppsgb.
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2020-03-25 23:15:37 +01:00 |
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Sergiu Ivanov
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e8e3a71d87
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networks: Remove nn.
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2020-03-25 23:05:28 +01:00 |
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Sergiu Ivanov
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dfb882d891
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networks: Remove st and stb.
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2020-03-25 00:31:23 +01:00 |
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Sergiu Ivanov
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a8a981098f
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utils: unorg -> unorgv
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2020-03-25 00:16:29 +01:00 |
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Sergiu Ivanov
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c4af42a2f6
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example: Update a call to build-boolean-signed-interaction-graph.
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2020-03-24 23:59:11 +01:00 |
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Sergiu Ivanov
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8bc2a582a6
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utils: Remove sgfy.
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2020-03-24 23:47:20 +01:00 |
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Sergiu Ivanov
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14688a9bae
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rs: Remove macros, update example.
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2020-03-24 23:22:20 +01:00 |
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Sergiu Ivanov
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b79bae9d67
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example: Update the randomly generated network.
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2020-03-22 21:03:20 +01:00 |
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Sergiu Ivanov
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b38bebb67b
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example: Add some examples for random functions and networks.
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2020-03-22 20:38:32 +01:00 |
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Sergiu Ivanov
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e7b35a451c
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Add the example on tabulating Boolean networks.
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2020-03-22 20:22:23 +01:00 |
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Sergiu Ivanov
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32d117a155
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example: Network functions -> Tabulating functions and networks.
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2020-03-22 19:36:07 +01:00 |
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Sergiu Ivanov
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572bef8a7b
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networks: Add tabulate and illustrate it in example.
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2020-03-15 16:12:35 +01:00 |
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Sergiu Ivanov
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f005d77516
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example: Explain setting network variables to constants.
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2020-03-04 23:51:11 +01:00 |
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Sergiu Ivanov
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f8dc65df0a
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example: Promote Reaction Systems to top-level heading.
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2020-03-04 18:21:20 +01:00 |
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Sergiu Ivanov
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2437dec620
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example: Explain why states for reaction systems include full context sequences.
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2020-03-03 01:03:33 +01:00 |
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Sergiu Ivanov
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cbdfdabe7a
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example: Illustrate building interactive processes.
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2020-03-03 01:01:21 +01:00 |
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Sergiu Ivanov
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0d73b33ff3
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example: Some updates to the state graph of the reaction system.
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2020-03-03 01:01:00 +01:00 |
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Sergiu Ivanov
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227dfff14a
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example: Illustrate state graphs for reaction systems.
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2020-03-03 00:25:26 +01:00 |
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Sergiu Ivanov
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c0d36a34a7
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rs: Add read-ctx and illustrate it in example.org.
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2020-03-02 23:11:26 +01:00 |
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Sergiu Ivanov
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a9fc272c13
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example,munch-sexp: Rename the parameter tab -> sexp.
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2020-03-02 18:38:39 +01:00 |
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Sergiu Ivanov
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e07c5c239c
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example: munch-table -> munch-sexp.
This code block can be used to prepare any sexp Org-mode produces.
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2020-03-02 18:36:26 +01:00 |
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Sergiu Ivanov
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db88987c13
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example: Show how to apply reaction systems.
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2020-03-01 21:14:18 +01:00 |
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Sergiu Ivanov
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77c0106ea2
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rs: Add some functions for showing RS as Org tables.
Also add an example to example.org.
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2020-03-01 21:10:01 +01:00 |
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Sergiu Ivanov
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d2121bd5e6
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rs: Add unorg-rs and showcase it in example.org.
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2020-03-01 20:26:16 +01:00 |
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Sergiu Ivanov
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007c5b96bf
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example: Show what happens when multiple modalities cause the same state transition.
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2020-03-01 18:01:53 +01:00 |
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Sergiu Ivanov
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02d564a374
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example: Add an example on printing annotated state graphs for networks.
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2020-03-01 15:22:11 +01:00 |
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Sergiu Ivanov
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e3a04cb765
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example.org: Add examples of state graphs.
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2020-02-26 21:17:11 +01:00 |
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Sergiu Ivanov
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9f4fae1437
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example.org: Illustrate signed interaction graphs.
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2020-02-23 10:14:32 +01:00 |
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Sergiu Ivanov
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511aa60c31
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Show off some examples of Boolean networks.
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2020-02-22 21:01:06 +01:00 |
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Sergiu Ivanov
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e8af2055e6
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Add example.org and an accompanying picture.
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2020-02-22 20:34:24 +01:00 |
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