Sergiu Ivanov
8722d63d3e
Type build-syntactic-interaction-graph.
2022-05-15 01:57:49 +02:00
Sergiu Ivanov
0018c91fb6
Type list-syntactic-interactions.
2022-05-10 10:41:07 +02:00
Sergiu Ivanov
0336526a84
Type forms->boolean-network.
2022-05-05 11:59:37 +02:00
Sergiu Ivanov
871a923842
Type make-boolean-network-form.
2022-05-05 11:25:10 +02:00
Sergiu Ivanov
7a3cbaa1af
Add network-form->network/01.
2022-05-04 01:21:11 +02:00
Sergiu Ivanov
43e29f928b
Add network-form->network/boolean.
2022-05-04 01:12:52 +02:00
Sergiu Ivanov
b795be0a39
Type network-form->network as network-form->network/any.
2022-05-03 22:01:13 +02:00
Sergiu Ivanov
181b427cd8
Add update-function-form->update-function/boolean and update-function-form->update-function/01.
2022-05-03 21:41:50 +02:00
Sergiu Ivanov
2c2d8fbbdb
update-function-form->update-function → update-function-form->update-function/any
2022-05-03 21:26:36 +02:00
Sergiu Ivanov
320ae55456
Type update-function-form->update-function.
2022-05-03 15:40:23 +02:00
Sergiu Ivanov
b97bbfd972
Type network-form.
2022-05-02 00:27:55 +02:00
Sergiu Ivanov
901720d2f5
Add UpdateFunctionForm.
2022-05-02 00:16:16 +02:00
Sergiu Ivanov
458ba10ab5
Add 01->boolean/state (replacing booleanize-state).
2022-05-01 01:05:35 +02:00
Sergiu Ivanov
aea472acb2
Remove make-state and make-state-booleanize.
...
make-state is just a longer word for hash, and I never really use
make-state-booleanize.
2022-05-01 00:55:42 +02:00
Sergiu Ivanov
ba30e3dc5e
Type update.
2022-05-01 00:33:43 +02:00
Sergiu Ivanov
9a2f1ff527
Type make-01-domains and make-01-network.
2022-04-30 23:21:42 +02:00
Sergiu Ivanov
e867a86d4d
Add the type Domain.
2022-04-29 16:10:36 +02:00
Sergiu Ivanov
be729f6ca8
Type make-same-domains, make-boolean-domains, make-boolean-network.
2022-04-29 15:54:15 +02:00
Sergiu Ivanov
883e845d9d
Type network and add examples.
2022-04-28 23:47:37 +02:00
Sergiu Ivanov
5efe086d06
Add UpdateFunction and DomainMapping.
2022-04-27 00:15:03 +02:00
Sergiu Ivanov
85566d7479
Start migrating networks to Typed Racket.
2022-04-27 00:10:13 +02:00
Sergiu Ivanov
650801a6d2
Add the untyped submodule to utils.
2022-04-01 00:09:42 +02:00
Sergiu Ivanov
ec50395cb0
networks: Add a copy of lists-transpose.
...
I will remove this copy when I will have migrated networks to
Typed Racket.
2022-02-13 19:48:21 +01:00
Sergiu Ivanov
75560658a0
networks: eval-with → eval1-with
...
This makes the type checker happy because it's more precise to use
eval1-with.
2022-01-16 23:15:33 +01:00
Sergiu Ivanov
38660cc0a5
sbn-interaction-graph: Use zero-edges and declare it in the contract.
2021-08-04 17:33:17 +02:00
Sergiu Ivanov
d7d3717c83
networks: Fix build-tbn-state-graph.
2020-11-28 23:12:49 +01:00
Sergiu Ivanov
6c30120376
networks: Remove 01-related state graph functions.
...
Remove build-full-01-state-graph and
build-full-01-state-graph-annotated.
2020-11-28 23:10:18 +01:00
Sergiu Ivanov
5419278462
networks,tbn->network: Use make-01-network.
...
Also add some tests.
2020-11-28 23:05:56 +01:00
Sergiu Ivanov
c0ec7369fd
networks: Add make-01-network.
2020-11-28 23:01:57 +01:00
Sergiu Ivanov
5fc4875adf
networks: Make table->network infer the domains.
2020-11-28 22:46:43 +01:00
Sergiu Ivanov
8f9740d2d7
network: Fix the tests for interaction graphs.
2020-11-26 22:36:19 +01:00
Sergiu Ivanov
cdb2149358
network: Fix table->network.
2020-11-26 22:25:25 +01:00
Sergiu Ivanov
a074258b1a
networks: Rename and generalize state graph functions.
...
build-full-state-graph and build-full-state-graph-annotated now
retrieve the domains from the network and are not limited to Boolean
state graphs.
2020-11-26 22:13:57 +01:00
Sergiu Ivanov
34ceccc446
networks: Fix build-syntactic-interaction-graph.
2020-11-23 23:16:11 +01:00
Sergiu Ivanov
fbd6ded717
networks: Fix list-syntactic-interactions.
2020-11-23 23:09:23 +01:00
Sergiu Ivanov
0a4035d9f7
networks: Fix the tests of make-boolean-network-form.
2020-11-22 23:00:26 +01:00
Sergiu Ivanov
f016fbb0ca
networks: Fix the tests for network-form->network.
2020-11-22 22:58:21 +01:00
Sergiu Ivanov
354fad2b1d
network: Roll back update to its previous version.
...
I thought I was clever to rewrite update using for/hash, but in fact
this new version only included the updated variables in the new
state :D
2020-11-22 22:50:29 +01:00
Sergiu Ivanov
3abf548ac2
networks: Bug in update.
2020-11-22 22:44:04 +01:00
Sergiu Ivanov
eb3e851a9d
networks: Make network and network-form transparent.
2020-11-22 22:38:45 +01:00
Sergiu Ivanov
ff6fa2c88b
network: Fix the test for make-boolean-network.
2020-11-22 22:11:25 +01:00
Sergiu Ivanov
b38adc89cf
networks: Don't use tabulate-boolean-network.
2020-11-22 22:08:45 +01:00
Sergiu Ivanov
e4751c6ed2
networks: Don't re-export network-form?.
2020-11-22 22:05:41 +01:00
Sergiu Ivanov
0085eb964b
networks: Fix make-boolean-network.
2020-11-22 22:02:56 +01:00
Sergiu Ivanov
5475bc5fbf
networks: Fix Random networks.
2020-11-22 21:58:00 +01:00
Sergiu Ivanov
2c68055818
networks: Fix constructing functions and networks.
2020-11-22 21:42:41 +01:00
Sergiu Ivanov
3a2453c92e
networks: Fix tabulating functions and networks.
2020-11-22 21:41:06 +01:00
Sergiu Ivanov
fd651ba4cc
network,Dynamics: Fixes.
2020-11-22 21:35:19 +01:00
Sergiu Ivanov
6cfa66694d
networks: Remove read-org-network-make-asyn and read-org-network-make-syn.
...
I think I initially intended these functions for Boolean networks.
I'll see if I add back something similar to these when I will be
fixing example.org.
2020-11-22 21:33:16 +01:00
Sergiu Ivanov
97026a2a42
networks: Say that domain mappings may be empty.
2020-11-22 21:30:50 +01:00
Sergiu Ivanov
27bb25c201
networks: Fix signed interaction graphs.
2020-11-22 21:26:26 +01:00
Sergiu Ivanov
3e35b8e0ab
networks, IG: Use forms->boolean-network.
...
IG = interaction graph
2020-11-22 21:24:05 +01:00
Sergiu Ivanov
ec3c74b5e2
networks: Add forms->boolean-network.
2020-11-22 21:21:31 +01:00
Sergiu Ivanov
a4979d9c9f
networks: Add make-boolean-network-form.
2020-11-22 21:18:22 +01:00
Sergiu Ivanov
d5e1819fff
networks: Add make-boolean-network.
2020-11-22 21:18:14 +01:00
Sergiu Ivanov
6fd3d41c7e
networks: Update the IG-related functions.
...
IG = interaction graph
2020-11-22 21:06:33 +01:00
Sergiu Ivanov
393f1d2bba
networks: Move domain-mapping/c to Basic definitions.
2020-11-22 20:46:53 +01:00
Sergiu Ivanov
cb208a66fc
networks: Add one more comment on syntactic IG vs. IG.
2020-11-22 20:42:30 +01:00
Sergiu Ivanov
b8f29d905d
networks: Remove make-network-from-forms.
2020-11-22 00:29:36 +01:00
Sergiu Ivanov
236dca704d
networks: Update network-form->network.
2020-11-22 00:27:56 +01:00
Sergiu Ivanov
ed03015e81
network: Add domains to network-form.
2020-11-22 00:24:15 +01:00
Sergiu Ivanov
cfe710e6b2
network: Don't use make-network-from-functions in basic definitions.
2020-11-22 00:08:46 +01:00
Sergiu Ivanov
11d75bcc89
networks: Rewrite update.
2020-11-21 23:28:30 +01:00
Sergiu Ivanov
6560dcbe6c
networks: Move booleanize-state before its own test case.
2020-11-21 23:15:17 +01:00
Sergiu Ivanov
a654ac5896
network: Remove make-network-from-forms.
2020-11-21 23:13:50 +01:00
Sergiu Ivanov
a3ac1c7fcd
networks: Include domains into the network.
...
This change is breaking. The following commits will progressively fix
the whole network module.
2020-11-21 22:53:45 +01:00
Sergiu Ivanov
f1a1123cc4
networks: Make it possible to skip expensive test cases.
...
At the moment, this is particularly for skipping the tests
constructing the interaction graphs.
2020-11-21 00:53:11 +01:00
Sergiu Ivanov
fe0fbc3ed0
networks: Add build-signed-interaction-graph/form.
2020-11-19 00:22:01 +01:00
Sergiu Ivanov
0345cd3648
networks: Add build-interaction-graph/form.
2020-11-19 00:14:54 +01:00
Sergiu Ivanov
8e100c2e8b
networks: Add build-signed-interaction-graph.
2020-11-18 01:11:37 +01:00
Sergiu Ivanov
0313d81c25
network: Add another self-loop test for get-interaction-sign.
2020-11-18 01:08:40 +01:00
Sergiu Ivanov
c55113f27e
network: Bug fix in get-interaction-sign.
2020-11-18 00:46:55 +01:00
Sergiu Ivanov
195d71ed4e
networks: Remove interaction? from the tests for get-interaction-sign.
2020-11-18 00:29:45 +01:00
Sergiu Ivanov
af8428d275
network,build-interaction-graph: Use in-list.
2020-11-18 00:13:00 +01:00
Sergiu Ivanov
d190f76fdf
networks: Add build-interaction-graph.
2020-11-18 00:09:15 +01:00
Sergiu Ivanov
ff9654e5c6
network: Add get-interaction-sign.
2020-11-17 23:38:34 +01:00
Sergiu Ivanov
bfc48ff453
networks: Slightly optimize interaction?.
2020-11-15 00:02:44 +01:00
Sergiu Ivanov
8a1f4c682e
networks: Add interaction?.
2020-11-14 23:15:39 +01:00
Sergiu Ivanov
ce0925e41e
networks: Remove the old functions for building interaction graphs.
...
These functions mix interaction graphs derived from the expressions
defining the network with deriving the interactions from the dynamics,
which does not always yield the same result. Also, some functions
only worked for Boolean networks, including get-interaction-sign.
Additionally, these functions are among the first ones I wrote in dds,
so there are a couple of things which can be written in a better way.
2020-11-12 22:54:04 +01:00
Sergiu Ivanov
60be01d979
networks: Fix and simplify the comment of Inferring interaction graphs.
2020-11-12 01:11:15 +01:00
Sergiu Ivanov
5ece1f6c88
networks: list-interactions → list-syntactic-interactions.
2020-11-12 01:09:18 +01:00
Sergiu Ivanov
681ed0e732
networks: Simplify and fix the comment of update.
2020-11-12 01:08:10 +01:00
Sergiu Ivanov
88caecb98a
networks: Properly export dynamics.
2020-11-12 01:07:41 +01:00
Sergiu Ivanov
6d77052ed6
network: Explain why a network does not include the domains.
2020-11-12 01:05:27 +01:00
Sergiu Ivanov
5fd1e5cb5b
Revert "BREAKING: Make domains part of the network."
...
This reverts commit f414ae8966
2020-11-12 01:03:48 +01:00
Sergiu Ivanov
f414ae8966
BREAKING: Make domains part of the network.
...
I always keep bringing domains about for my network, which complicates
things a lot. This commit packages the domains within the network,
which will break a lot of stuff :-) The following commits will fix it all.
2020-11-12 00:58:58 +01:00
Sergiu Ivanov
cde6ee30fa
networks: build-interaction-graph → build-syntactic-interaction-graph.
...
The interaction graph is *not* usually defined in this way.
2020-11-11 15:51:24 +01:00
Sergiu Ivanov
2b60b23bf1
networks: Add group-truth-table-by-nai.
2020-11-08 23:31:11 +01:00
Sergiu Ivanov
59c7108510
networks: Add and illustrate sbn-interaction-graph.
2020-11-08 22:56:46 +01:00
Sergiu Ivanov
bc9a2bd5f8
networks: Add and illustrate pretty-print-tbn-interaction-graph.
2020-11-08 22:30:29 +01:00
Sergiu Ivanov
7af1bb8d79
networks: Add tbn-interaction-graph and explain in example.
2020-11-08 20:29:00 +01:00
Sergiu Ivanov
000c2eeba7
networks: Fix the test for print-org-sbn.
2020-11-05 23:23:48 +01:00
Sergiu Ivanov
79d3ab1ea6
networks: Add print-org-sbn.
2020-11-04 00:06:48 +01:00
Sergiu Ivanov
c4a5327b4b
networks: Fix the tests for print-org-tbn.
2020-11-02 23:05:05 +01:00
Sergiu Ivanov
af5a9d07a9
networks: Add print-org-tbn.
2020-11-02 17:58:45 +01:00
Sergiu Ivanov
0edda89642
networks: Add compact-tbn.
2020-11-02 00:08:49 +01:00
Sergiu Ivanov
2a0cfb4dcc
network,compact-tbf: Use for/hash instead of hash-filter.
2020-11-01 23:42:51 +01:00
Sergiu Ivanov
f7e44df117
networks: Add compact-tbf.
2020-10-31 00:48:00 +01:00
Sergiu Ivanov
208dc12060
networks: Add normalize-tbn.
2020-10-24 23:51:56 +02:00
Sergiu Ivanov
11ecbf84dc
networks: Add normalized-tbn?.
2020-10-24 23:15:13 +02:00
