97026a2a42
networks: Say that domain mappings may be empty.
2020-11-22 21:30:50 +01:00
27bb25c201
networks: Fix signed interaction graphs.
2020-11-22 21:26:26 +01:00
3e35b8e0ab
networks, IG: Use forms->boolean-network.
...
IG = interaction graph
2020-11-22 21:24:05 +01:00
ec3c74b5e2
networks: Add forms->boolean-network.
2020-11-22 21:21:31 +01:00
a4979d9c9f
networks: Add make-boolean-network-form.
2020-11-22 21:18:22 +01:00
d5e1819fff
networks: Add make-boolean-network.
2020-11-22 21:18:14 +01:00
6fd3d41c7e
networks: Update the IG-related functions.
...
IG = interaction graph
2020-11-22 21:06:33 +01:00
393f1d2bba
networks: Move domain-mapping/c to Basic definitions.
2020-11-22 20:46:53 +01:00
cb208a66fc
networks: Add one more comment on syntactic IG vs. IG.
2020-11-22 20:42:30 +01:00
b8f29d905d
networks: Remove make-network-from-forms.
2020-11-22 00:29:36 +01:00
236dca704d
networks: Update network-form->network.
2020-11-22 00:27:56 +01:00
ed03015e81
network: Add domains to network-form.
2020-11-22 00:24:15 +01:00
cfe710e6b2
network: Don't use make-network-from-functions in basic definitions.
2020-11-22 00:08:46 +01:00
11d75bcc89
networks: Rewrite update.
2020-11-21 23:28:30 +01:00
6560dcbe6c
networks: Move booleanize-state before its own test case.
2020-11-21 23:15:17 +01:00
a654ac5896
network: Remove make-network-from-forms.
2020-11-21 23:13:50 +01:00
004e24d83c
README: Remove the TODO item about the interaction graphs.
2020-11-21 23:04:14 +01:00
a3ac1c7fcd
networks: Include domains into the network.
...
This change is breaking. The following commits will progressively fix
the whole network module.
2020-11-21 22:53:45 +01:00
f1a1123cc4
networks: Make it possible to skip expensive test cases.
...
At the moment, this is particularly for skipping the tests
constructing the interaction graphs.
2020-11-21 00:53:11 +01:00
097c5a7f09
example: Update the presentation of the functions concerning the interaction graphs.
2020-11-19 23:48:50 +01:00
fe0fbc3ed0
networks: Add build-signed-interaction-graph/form.
2020-11-19 00:22:01 +01:00
0345cd3648
networks: Add build-interaction-graph/form.
2020-11-19 00:14:54 +01:00
8e100c2e8b
networks: Add build-signed-interaction-graph.
2020-11-18 01:11:37 +01:00
0313d81c25
network: Add another self-loop test for get-interaction-sign.
2020-11-18 01:08:40 +01:00
c55113f27e
network: Bug fix in get-interaction-sign.
2020-11-18 00:46:55 +01:00
195d71ed4e
networks: Remove interaction? from the tests for get-interaction-sign.
2020-11-18 00:29:45 +01:00
a8adc9fb57
README: Add a new TODO item for splitting network into two models.
2020-11-18 00:19:53 +01:00
af8428d275
network,build-interaction-graph: Use in-list.
2020-11-18 00:13:00 +01:00
d190f76fdf
networks: Add build-interaction-graph.
2020-11-18 00:09:15 +01:00
ff9654e5c6
network: Add get-interaction-sign.
2020-11-17 23:38:34 +01:00
bfc48ff453
networks: Slightly optimize interaction?.
2020-11-15 00:02:44 +01:00
8a1f4c682e
networks: Add interaction?.
2020-11-14 23:15:39 +01:00
d24dadd4cd
example: Stage all the figures.
2020-11-12 22:56:53 +01:00
ce0925e41e
networks: Remove the old functions for building interaction graphs.
...
These functions mix interaction graphs derived from the expressions
defining the network with deriving the interactions from the dynamics,
which does not always yield the same result. Also, some functions
only worked for Boolean networks, including get-interaction-sign.
Additionally, these functions are among the first ones I wrote in dds,
so there are a couple of things which can be written in a better way.
2020-11-12 22:54:04 +01:00
70de0ec718
README: Add the milestone about the domains.
2020-11-12 17:22:43 +01:00
a8f4850139
README: Expand the milestone about interaction graphs.
2020-11-12 17:22:17 +01:00
99c74ba659
README: Expand the Scribble milestone to types and include more details.
2020-11-12 17:08:00 +01:00
7de4c5ef71
README: Add the Roadmap.
2020-11-12 16:40:24 +01:00
60be01d979
networks: Fix and simplify the comment of Inferring interaction graphs.
2020-11-12 01:11:15 +01:00
5ece1f6c88
networks: list-interactions → list-syntactic-interactions.
2020-11-12 01:09:18 +01:00
681ed0e732
networks: Simplify and fix the comment of update.
2020-11-12 01:08:10 +01:00
88caecb98a
networks: Properly export dynamics.
2020-11-12 01:07:41 +01:00
6d77052ed6
network: Explain why a network does not include the domains.
2020-11-12 01:05:27 +01:00
5fd1e5cb5b
Revert "BREAKING: Make domains part of the network."
...
This reverts commit f414ae8966
2020-11-12 01:03:48 +01:00
f414ae8966
BREAKING: Make domains part of the network.
...
I always keep bringing domains about for my network, which complicates
things a lot. This commit packages the domains within the network,
which will break a lot of stuff :-) The following commits will fix it all.
2020-11-12 00:58:58 +01:00
cde6ee30fa
networks: build-interaction-graph → build-syntactic-interaction-graph.
...
The interaction graph is *not* usually defined in this way.
2020-11-11 15:51:24 +01:00
af581f91df
example: Illustrate build-reduced-state-graph.
2020-11-11 00:37:12 +01:00
3b8ce5eb84
rs: Add pretty-print-reduced-state-graph.
2020-11-11 00:36:49 +01:00
ce0d5023bf
rs: Add build-reduced-state-graph.
2020-11-10 09:42:50 +01:00
4f3eef0ba3
rs: Fix the comment of build-interactive-process-graph.
...
It doesn't pad the context sequence with empty contexts any more.
2020-11-09 23:24:43 +01:00
Sergiu Ivanov