Commit Graph

21 Commits

Author SHA1 Message Date
Sergiu Ivanov
e7b35a451c Add the example on tabulating Boolean networks. 2020-03-22 20:22:23 +01:00
Sergiu Ivanov
32d117a155 example: Network functions -> Tabulating functions and networks. 2020-03-22 19:36:07 +01:00
Sergiu Ivanov
572bef8a7b networks: Add tabulate and illustrate it in example. 2020-03-15 16:12:35 +01:00
Sergiu Ivanov
f005d77516 example: Explain setting network variables to constants. 2020-03-04 23:51:11 +01:00
Sergiu Ivanov
f8dc65df0a example: Promote Reaction Systems to top-level heading. 2020-03-04 18:21:20 +01:00
Sergiu Ivanov
2437dec620 example: Explain why states for reaction systems include full context sequences. 2020-03-03 01:03:33 +01:00
Sergiu Ivanov
cbdfdabe7a example: Illustrate building interactive processes. 2020-03-03 01:01:21 +01:00
Sergiu Ivanov
0d73b33ff3 example: Some updates to the state graph of the reaction system. 2020-03-03 01:01:00 +01:00
Sergiu Ivanov
227dfff14a example: Illustrate state graphs for reaction systems. 2020-03-03 00:25:26 +01:00
Sergiu Ivanov
c0d36a34a7 rs: Add read-ctx and illustrate it in example.org. 2020-03-02 23:11:26 +01:00
Sergiu Ivanov
a9fc272c13 example,munch-sexp: Rename the parameter tab -> sexp. 2020-03-02 18:38:39 +01:00
Sergiu Ivanov
e07c5c239c example: munch-table -> munch-sexp.
This code block can be used to prepare any sexp Org-mode produces.
2020-03-02 18:36:26 +01:00
Sergiu Ivanov
db88987c13 example: Show how to apply reaction systems. 2020-03-01 21:14:18 +01:00
Sergiu Ivanov
77c0106ea2 rs: Add some functions for showing RS as Org tables.
Also add an example to example.org.
2020-03-01 21:10:01 +01:00
Sergiu Ivanov
d2121bd5e6 rs: Add unorg-rs and showcase it in example.org. 2020-03-01 20:26:16 +01:00
Sergiu Ivanov
007c5b96bf example: Show what happens when multiple modalities cause the same state transition. 2020-03-01 18:01:53 +01:00
Sergiu Ivanov
02d564a374 example: Add an example on printing annotated state graphs for networks. 2020-03-01 15:22:11 +01:00
Sergiu Ivanov
e3a04cb765 example.org: Add examples of state graphs. 2020-02-26 21:17:11 +01:00
Sergiu Ivanov
9f4fae1437 example.org: Illustrate signed interaction graphs. 2020-02-23 10:14:32 +01:00
Sergiu Ivanov
511aa60c31 Show off some examples of Boolean networks. 2020-02-22 21:01:06 +01:00
Sergiu Ivanov
e8af2055e6 Add example.org and an accompanying picture. 2020-02-22 20:34:24 +01:00