9.2 KiB
I am assistant professor (maître de conférences) at Université d'Évry, Paris-Saclay University. I do my research at IBISC.
Write to me at sergiu $_{dot}$ ivanov (at) univ-evry.fr .
Here is a report (in French) about different aspects of my work from 2019 to 2023.
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My News
| [2023-05-29] | I was granted a sabbatical (CRCT) for the school year 2023/2024. |
| [2023-04-14] | Our paper Numerical networks of cells is published. |
| [2023-03-14] | I recommend an article in Peer Community In Mathematical and Computational Biology. |
Current reading: Damien Woods, David Doty, Cameron Myhrvold, Joy Hui, Felix Zhou, Peng Yin, Erik Winfree. Diverse and robust molecular algorithms using reprogrammable DNA self-assembly.
Research
I am currently actively working on:
theoretical biology DNA nanotechnology natural computing theoretical computer science
I am also working on:
formal languages rewriting network biology complexity biomodelling
I have worked with these (and similar) formal models:
membrane (P) systems Boolean networks reaction systems register machines Petri nets
I am interested in formal and abstract structures, as well as their various connections to biological reality.
Publications
I maintain a complete list of my publications.
A fairly comprehensive list of my publications is also available on my DBLP page. A list of my publications with some freely downloadable full-texts is also available on HAL (a French scientific archive).
My ORCID number is 0000-0002-1537-6508 and I have a ResearchGate profile.
Also, check out this initiative https://nofreeviewnoreview.org/.
Teaching
Here is a list of courses I prepared, in chronological order:
- computational DNA nanotechnology, with Damien Regnault, password:
m2geniomhe-dna - introduction to membrane computing, with David Orellana-Martín and Ricardo Graciani, E-mail me for the password
- introduction to LaTeX and Git in French, password:
ppei-l3 - operating systems in French, password:
sye-l3 - a very quick introduction to artificial life
- Petri nets for biomodelling
- introduction to Cytoscape
- To Git or Not to Git
- Haskell for Life
- operating systems and networks
- basic parsing
All course materials are distributed under the Creative Commons Attribution Alone licence, unless specified otherwise.
Seminars
Here are some slides from some of my seminars:
- The Many Shapes of Polymorphism (slides)
- Sequential Reprogramming of Biological Network Fate (slides)
- Understanding Evolution: A Methodology for Evaluating the Extensibility of Boolean Networks’ Structure and Function (slides)
These materials are distributed under the Creative Commons Attribution Alone licence.
Programming
I am currently developing dds, a home-made toolkit for discrete dynamical systems in Racket, a modern Lisp dialect.
In the past, I wrote many lines of Haskell. Here is my GitHub profile.
Roles
I manage the work group on personalized medicine Axe transverse Médecine personnalisée at IBISC together with Farida Zehraoui.
I am a recommender for Peer Community In Mathematical and Computational Biology.
I am member of the editorial board of the Computer Science Journal of Moldova.
I am elected member of the Research Commission and of the Academic Council of Université d'Évry.
I am an elected member of the Council of the Graduate School "Computer Science" of the Paris-Saclay University.
I am an elected member of the Council of IBISC laboratory.
I am member of the Council for Digital Ressources (Conseil des Utilisateurs du Numérique) of the Université d'Évry.
Past positions
- 2016–2017: Postdoc with Nicolas Glade on biomechanical modelling of the cytoskeleton, with additional focus on unconventional computing, theoretical biology, and epistemology.
- 2015–2016: ATER at Université Paris Est Créteil.
- 2012–2015: PhD student at Université Paris Est Créteil, supervised by Sergey Verlan. I defended my thesis entitled "On the Power and Universality of Biologically-inspired Models of Computation" in June 2015 (presentation slides).
Full contact information
Sergiu Ivanov
Room: 319
IBISC - IBGBI – 3rd floor
23, boulevard de France
91034 Évry, France