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I am assistant professor (maître de conférences) at Université d'Évry, Paris-Saclay University. I do my research at IBISC.
Write to me at sergiu $_{dot}$ ivanov (at) univ-evry.fr .
Here is a report (in French) about different aspects of my work from 2018 to 2022.
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My News
| [2022-12-04] | Our book chapter Network Modeling Methods for Precision Medicine has been published. |
| [2022-11-28] | Our class on computational DNA nanotechnology starts. |
| [2022-11-25] | I am elected member of the Research Commission of Université d'Évry. |
Research
I am currently actively working on
theoretical biology DNA nanotechnology network biology theoretical computer science
I am also working on:
bio-inspired computing formal languages rewriting complexity biomodelling
I have worked with these (and similar) formal models:
Boolean networks membrane (P) systems reaction systems register machines Petri nets
I am interested in formal and abstract structures, as well as their various connections to biological reality.
Publications
I maintain a complete list of my publications.
A fairly comprehensive list of my publications is also available on my DBLP page. A list of my publications with some freely downloadable full-texts is also available on HAL (a French scientific archive).
My ORCID number is 0000-0002-1537-6508 and I have a ResearchGate profile.
Also, check out this initiative https://nofreeviewnoreview.org/.
Teaching
Here is a list of courses I prepared, in chronological order:
- computational DNA nanotechnology, with Damien Regnault; work in progress (summary)
- introduction to membrane computing, with David Orellana-Martín and Ricardo Graciani, E-mail me for the password
- introduction to LaTeX and Git in French, password:
ppei-l3 - operating systems in French, password:
sye-l3 - a very quick introduction to artificial life
- Petri nets for biomodelling
- introduction to Cytoscape
- To Git or Not to Git
- Haskell for Life
- operating systems and networks
- basic parsing
All course materials are distributed under the Creative Commons Attribution Alone licence, unless specified otherwise.
Seminars
Here are some slides from some of my seminars:
- Sequential Reprogramming of Biological Network Fate (slides)
- Understanding Evolution: A Methodology for Evaluating the Extensibility of Boolean Networks’ Structure and Function (slides)
- Theory of Computer Science: Why All That Formal Stuff? (slides)
- Universality and Computational Completeness of Controlled Leftist Insertion-Deletion Systems (slides)
These materials are distributed under the Creative Commons Attribution Alone licence.
Programming
I am currently developing dds, a home-made toolkit for discrete dynamical systems in Racket, a modern Lisp dialect.
In the past, I wrote many lines of Haskell, C++, and Python. Here is my GitHub profile.
Roles
I manage the work group on personalized medicine Axe transverse Médecine personnalisée at IBISC together with Farida Zehraoui.
I am a recommender for Peer Community In Mathematical and Computational Biology.
I am in charge with the first year of the master's program M1 Computer & Network Systems (M1 CNS, in French) together with Jean-Christophe Janodet.
I am an elected member of the Research Commission of Université d'Évry.
I am an elected member of the Council of the Graduate School "Computer Science" of the Paris-Saclay University.
I am an elected member of the Council of IBISC laboratory.
I co-organise with Association Info Évry the Évry site of the yearly night hackathon Nuit de l'Info.
I am member of the teaching workgroup of the Administrative Council of Digital Ressources (CARI pédagogique).
Past positions
- 2016–2017: Postdoc with Nicolas Glade on biomechanical modelling of the cytoskeleton, with additional focus on unconventional computing, theoretical biology, and epistemology.
- 2015–2016: ATER at Université Paris Est Créteil.
- 2012–2015: PhD student at Université Paris Est Créteil, supervised by Sergey Verlan. I defended my thesis entitled "On the Power and Universality of Biologically-inspired Models of Computation" in June 2015 (presentation slides).
Full contact information
Sergiu Ivanov
Room: 319
IBISC - IBGBI – 3rd floor
23, boulevard de France
91034 Évry, France