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#+TITLE: Sergiu Ivanov
#+OPTIONS: title:nil
#+LANGUAGE: en
#+ATTR_HTML: :class photo-ref
[[https://ho-thanh-hung.com/][Hưng]]
#+ATTR_HTML: :alt a picture of sergiu ivanov :class me
[[file:content/me/sivanov.jpg]]
#+ATTR_HTML: :alt in French :class lang
[[file:fr/index.org][file:content/imgs/fr.png]]
I am assistant professor ([[https://en.wikipedia.org/wiki/Academic_ranks_in_France#Permanent_positions][maître de conférences]]) at [[http://www.univ-evry.fr/fr/index.html][Université d'Évry,
Paris-Saclay University]]. I do my research at [[https://www.ibisc.univ-evry.fr/en][IBISC]].
Write to me at   *=sergiu= $_{dot}$ =ivanov= (at) =univ-evry.fr=*  .
Here is a [[file:content/me/ivanov-ripec.pdf][report]] (in French) about different aspects of my work from
2018 to 2022.
-----
Jump to:
#+ATTR_HTML: :class quicklinks
| | [[My News][My News]] | [[Past positions]]           | [[Roles][Roles]] |
| | [[Research]] | [[Teaching]] | [[Full contact information]] |
| | [[Publications]]          | [[Programming]] | |
* My News
#+ATTR_HTML: :class news
| [2022-06-07] | I am giving the seminar [[file:content/seminars/cmsb-extension-beam.pdf][P vs. B: P Systems as a Formal Framework for Controllability of Boolean Networks]] at [[https://www.timc.fr/en][TIMC]], Université Grenoble-Alpes. |
| [2022-05-31] | The workshop [[https://www.ibisc.univ-evry.fr/atac2022/][ATAC 2022]] is postponed and replaced by a webinar. |
| [2022-05-23] | Our paper [[https://www.worldscientific.com/doi/10.1142/S0129054122410015][Tissue P Systems with Vesicles of Multisets]] has just appeared in press. |
* Research
I am currently /actively working/ on
#+ATTR_HTML: :class keylinks
[[https://en.wikipedia.org/wiki/Network_medicine][network medicine]]   [[https://en.wikipedia.org/wiki/Mathematical_and_theoretical_biology][theoretical biology]]   [[https://en.wikipedia.org/wiki/Theoretical_computer_science][theoretical computer science]]   [[https://en.wikipedia.org/wiki/DNA_nanotechnology][DNA nanotechnology]]
I am /also working/ on:
#+ATTR_HTML: :class keylinks
[[https://en.wikipedia.org/wiki/Bio-inspired_computing][bio-inspired computing]]   [[https://en.wikipedia.org/wiki/Formal_language][formal languages]]   [[https://en.wikipedia.org/wiki/Rewriting#String_rewriting_systems][rewriting]]   [[https://en.wikipedia.org/wiki/Complexity][complexity]]  
[[https://en.wikipedia.org/wiki/Modelling_biological_systems][biomodelling]]
I have worked with these (and similar) /formal models/:
#+ATTR_HTML: :class keylinks
[[https://en.wikipedia.org/wiki/Boolean_network][Boolean networks]]   [[https://en.wikipedia.org/wiki/P_system][membrane (P) systems]]   [[https://home.cs.colorado.edu/~lizb/phd/grzegorz.pdf][reaction systems]]  
[[https://en.wikipedia.org/wiki/Register_machine#Lambek_(1961)_atomizes_Melzak's_model_into_the_Minsky_(1961)_model:_INC_and_DEC-with-test][register machines]]   [[https://en.wikipedia.org/wiki/Petri_net][Petri nets]]
I am interested in formal and abstract structures, as well as their
various connections to biological reality.
* Publications
I maintain a [[file:en/publications.org][complete list]] of my publications.
A fairly comprehensive list of my publications is also available on
[[https://dblp.uni-trier.de/pers/hd/i/Ivanov_0001:Sergiu][my DBLP page]]. A list of my publications with some freely
downloadable full-texts is also available on [[https://hal.archives-ouvertes.fr/search/index/?q=sergiu+ivanov][HAL]] ([[https://en.wikipedia.org/wiki/Hyper_Articles_en_Ligne][a French
scientific archive]]).
My ORCID number is [[https://orcid.org/0000-0002-8653-3814][0000-0002-8653-3814]] and I have a [[https://www.researchgate.net/profile/Sergiu_Ivanov4][ResearchGate
profile]].
Also, check out this initiative https://nofreeviewnoreview.org/.
* Teaching
Here is a list of courses I prepared, in chronological order:
- [[https://ecampus.paris-saclay.fr/course/view.php?id=21726][introduction to membrane computing]], with [[http://www.cs.us.es/~dorellana/][David Orellana-Martín]] and
[[https://www.researchgate.net/profile/Ricardo_Graciani_Diaz][Ricardo Graciani]], E-mail me for the password
- [[https://ecampus.paris-saclay.fr/course/view.php?id=54863][introduction to LaTeX and Git]] in French, password: =ppei-l3=
- [[https://ecampus.paris-saclay.fr/course/view.php?id=56060][operating systems]] in French, password: =sye-l3=
- [[file:en/alife-intro.org][a very quick introduction to artificial life]]
- [[file:en/pn-biomodelling.org][Petri nets for biomodelling]]
- [[file:en/cytoscape-intro.org][introduction to Cytoscape]]
- [[file:en/togit.org][To Git or Not to Git]]
- [[file:en/h4life.org][Haskell for Life]]
- [[file:en/os-upec.org][operating systems and networks]]
- [[file:en/parsing-upec.org][basic parsing]]
#+ATTR_HTML: :alt image of Creative Commons Attribution Alone licence :class ccby
[[https://en.wikipedia.org/wiki/Creative_Commons_license][file:content/imgs/ccby.png]]
All course materials are distributed under the [[https://en.wikipedia.org/wiki/Creative_Commons_license][Creative Commons
Attribution Alone licence]], unless specified
otherwise.
** Seminars
Here are some slides from some of my seminars:
- Sequential Reprogramming of Biological Network Fate ([[file:content/seminars/cmsb-extension-beam.pdf][slides]])
- Understanding Evolution: A Methodology for Evaluating the
Extensibility of Boolean Networks Structure and Function ([[file:content/seminars/sbn-extension-beam-bioss-ia.pdf][slides]])
- Theory of Computer Science: Why All That Formal Stuff? ([[file:content/seminars/cs-theory.pdf][slides]])
- Universality and Computational Completeness of Controlled Leftist
Insertion-Deletion Systems ([[file:content/seminars/leftist-univ-beam.pdf][slides]])
#+ATTR_HTML: :alt image of Creative Commons Attribution Alone licence :class ccby
[[https://en.wikipedia.org/wiki/Creative_Commons_license][file:content/imgs/ccby.png]]
These materials are distributed under the [[https://en.wikipedia.org/wiki/Creative_Commons_license][Creative Commons
Attribution Alone licence]].
* Programming
I am currently developing [[https://git.marvid.fr/scolobb/dds][dds]], a home-made toolkit for discrete
dynamical systems in [[https://racket-lang.org/][Racket]], a modern Lisp dialect.
In the past, I wrote many lines of Haskell, C++, and Python. Here
is [[https://github.com/scolobb][my GitHub profile]].
* Roles
I manage the work group on [[https://en.wikipedia.org/wiki/Personalized_medicine][personalized medicine]] /Axe transverse
Médecine personnalisée/ at IBISC together with [[https://www.ibisc.univ-evry.fr/~zehraoui/Farida_Zehraoui.html][Farida Zehraoui]].
I am a [[https://mcb.peercommunityin.org/public/user_public_page?userId=439][recommender]] for [[https://mcb.peercommunityin.org/][Peer Community In Mathematical and
Computational Biology]].
I am in charge with the first year of the master's program M1
Computer & Network Systems ([[https://www.universite-paris-saclay.fr/formation/master/informatique/m1-computer-network-systems][M1 CNS]], in French) together with
[[https://ibisc.univ-evry.fr/~janodet/][Jean-Christophe Janodet]].
I am an elected member of the /Council of the [[https://www.universite-paris-saclay.fr/en/graduate-schools][Graduate School
"Computer Science"]]/ of the Paris-Saclay University.
I am an elected member of the /Council of IBISC laboratory/.
I co-organise with [[https://info-evry.fr/][Association Info Évry]] the Évry site of the yearly
night hackathon [[https://www.nuitdelinfo.com/][/Nuit de l'Info/]].
I am member of the teaching workgroup of the Administrative Council
of Digital Ressources (/CARI pédagogique/).
* Past positions
- 20162017: /Postdoc/ with [[https://sites.google.com/site/nicolasglade/][Nicolas Glade]] on biomechanical modelling
of the [[https://en.wikipedia.org/wiki/Cytoskeleton][cytoskeleton]], with additional focus on unconventional
computing, theoretical biology, and epistemology.
- 20152016: [[https://en.wikipedia.org/wiki/Attaché_Temporaire_d'Enseignement_et_de_Recherche][/ATER/]] at [[http://www.en.u-pec.fr/][Université Paris Est Créteil]].
- 20122015: /PhD student/ at [[http://www.en.u-pec.fr/][Université Paris Est Créteil]],
supervised by [[http://lacl.univ-paris12.fr/verlan/][Sergey Verlan]]. I defended [[file:content/phd/ivanov-phd.pdf][my thesis]] entitled
/"On the Power and Universality of Biologically-inspired
Models of Computation"/ in June 2015 ([[file:content/phd/ivanov-phd-beam.pdf][presentation slides]]).
* Full contact information
*Sergiu Ivanov* \\
Room: 319 \\
IBISC - [[https://www.openstreetmap.org/search?query=%C3%A9vry%20ibgbi][IBGBI]] 3rd floor \\
23, boulevard de France \\
91034 Évry, France
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