174 lines
9.6 KiB
Org Mode
174 lines
9.6 KiB
Org Mode
#+TITLE: Sergiu Ivanov
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#+OPTIONS: title:nil
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#+LANGUAGE: en
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#+ATTR_HTML: :class photo-ref
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[[https://linktr.ee/mark_hrd][Mark]]
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#+ATTR_HTML: :alt a picture of sergiu ivanov :class me
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[[file:content/me/sivanov.jpg]]
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#+ATTR_HTML: :alt in French :class lang
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[[file:fr/index.org][file:content/imgs/fr.png]]
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I am assistant professor ([[https://en.wikipedia.org/wiki/Academic_ranks_in_France#Permanent_positions][maître de conférences]]) at [[http://www.univ-evry.fr/fr/index.html][Université d'Évry,
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Paris-Saclay University]]. I do my research at [[https://www.ibisc.univ-evry.fr/en][IBISC]].
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Write to me at *=sergiu= $_{dot}$ =ivanov= (at) =univ-evry.fr=* .
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Here is a [[file:content/me/ivanov-ripec.pdf][report]] (in French) about different aspects of my work from
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2018 to 2022.
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-----
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Jump to:
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#+ATTR_HTML: :class quicklinks
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| | [[My News][My News]] | [[Past positions]] | [[Roles][Roles]] |
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| | [[Research]] | [[Teaching]] | [[Full contact information]] |
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| | [[Publications]] | [[Programming]] | |
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* My News
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#+ATTR_HTML: :class news
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| [2023-03-14] | I recommend [[https://mcb.peercommunityin.org/PCIMCB/articles/rec?id=183][an article]] in Peer Community In Mathematical and Computational Biology. |
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| [2023-03-02] | Pre-print available for our work [[https://arxiv.org/abs/2303.00110][A P Systems Variant for Reasoning about Sequential Controllability of Boolean Networks]]. |
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| [2023-02-02] | I participate in the round table [[https://www.theatre-corbeil-essonnes.fr/saison-2022-2023-1/a-digital-journey-are-you-experienced][The societal challenges of digital innovation]]. |
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* Research
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I am currently /actively working/ on:
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#+ATTR_HTML: :class keylinks
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[[https://en.wikipedia.org/wiki/Mathematical_and_theoretical_biology][theoretical biology]] [[https://en.wikipedia.org/wiki/DNA_nanotechnology][DNA nanotechnology]] [[https://en.wikipedia.org/wiki/Natural_computing][natural computing]]
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[[https://en.wikipedia.org/wiki/Theoretical_computer_science][theoretical computer science]]
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I am /also working/ on:
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#+ATTR_HTML: :class keylinks
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[[https://en.wikipedia.org/wiki/Formal_language][formal languages]] [[https://en.wikipedia.org/wiki/Rewriting#String_rewriting_systems][rewriting]] [[https://en.wikipedia.org/wiki/Network_biology][network biology]] [[https://en.wikipedia.org/wiki/Complexity][complexity]]
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[[https://en.wikipedia.org/wiki/Modelling_biological_systems][biomodelling]]
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I have worked with these (and similar) /formal models/:
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#+ATTR_HTML: :class keylinks
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[[https://en.wikipedia.org/wiki/P_system][membrane (P) systems]] [[https://en.wikipedia.org/wiki/Boolean_network][Boolean networks]] [[https://home.cs.colorado.edu/~lizb/phd/grzegorz.pdf][reaction systems]]
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[[https://en.wikipedia.org/wiki/Register_machine#Lambek_(1961)_atomizes_Melzak's_model_into_the_Minsky_(1961)_model:_INC_and_DEC-with-test][register machines]] [[https://en.wikipedia.org/wiki/Petri_net][Petri nets]]
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I am interested in formal and abstract structures, as well as their
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various connections to biological reality.
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* Publications
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I maintain a [[file:en/publications.org][complete list]] of my publications.
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A fairly comprehensive list of my publications is also available on
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[[https://dblp.uni-trier.de/pers/hd/i/Ivanov_0001:Sergiu][my DBLP page]]. A list of my publications with some freely
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downloadable full-texts is also available on [[https://hal.archives-ouvertes.fr/search/index/?q=sergiu+ivanov][HAL]] ([[https://en.wikipedia.org/wiki/Hyper_Articles_en_Ligne][a French
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scientific archive]]).
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My ORCID number is [[https://orcid.org/0000-0002-1537-6508][0000-0002-1537-6508]] and I have a [[https://www.researchgate.net/profile/Sergiu_Ivanov4][ResearchGate
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profile]].
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Also, check out this initiative https://nofreeviewnoreview.org/.
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* Teaching
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Here is a list of courses I prepared, in chronological order:
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- [[https://ecampus.paris-saclay.fr/course/view.php?id=79600][computational DNA nanotechnology]], with [[https://www.ibisc.univ-evry.fr/~dregnault/Page_dacceuil.html][Damien Regnault]], password: =m2geniomhe-dna=
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- [[https://ecampus.paris-saclay.fr/course/view.php?id=21726][introduction to membrane computing]], with [[http://www.cs.us.es/~dorellana/][David Orellana-Martín]] and
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[[https://www.researchgate.net/profile/Ricardo_Graciani_Diaz][Ricardo Graciani]], E-mail me for the password
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- [[https://ecampus.paris-saclay.fr/course/view.php?id=75618][introduction to LaTeX and Git]] in French, password: =ppei-l3=
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- [[https://ecampus.paris-saclay.fr/course/view.php?id=75796][operating systems]] in French, password: =sye-l3=
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- [[file:en/alife-intro.org][a very quick introduction to artificial life]]
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- [[file:en/pn-biomodelling.org][Petri nets for biomodelling]]
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- [[file:en/cytoscape-intro.org][introduction to Cytoscape]]
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- [[file:en/togit.org][To Git or Not to Git]]
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- [[file:en/h4life.org][Haskell for Life]]
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- [[file:en/os-upec.org][operating systems and networks]]
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- [[file:en/parsing-upec.org][basic parsing]]
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#+ATTR_HTML: :alt image of Creative Commons Attribution Alone licence :class ccby
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[[https://en.wikipedia.org/wiki/Creative_Commons_license][file:content/imgs/ccby.png]]
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All course materials are distributed under the [[https://en.wikipedia.org/wiki/Creative_Commons_license][Creative Commons
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Attribution Alone licence]], unless specified
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otherwise.
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** Seminars
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Here are some slides from some of my seminars:
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- Sequential Reprogramming of Biological Network Fate ([[file:content/seminars/cmsb-extension-beam.pdf][slides]])
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- Understanding Evolution: A Methodology for Evaluating the
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Extensibility of Boolean Networks’ Structure and Function ([[file:content/seminars/sbn-extension-beam-bioss-ia.pdf][slides]])
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- Theory of Computer Science: Why All That Formal Stuff? ([[file:content/seminars/cs-theory.pdf][slides]])
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- Universality and Computational Completeness of Controlled Leftist
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Insertion-Deletion Systems ([[file:content/seminars/leftist-univ-beam.pdf][slides]])
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#+ATTR_HTML: :alt image of Creative Commons Attribution Alone licence :class ccby
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[[https://en.wikipedia.org/wiki/Creative_Commons_license][file:content/imgs/ccby.png]]
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These materials are distributed under the [[https://en.wikipedia.org/wiki/Creative_Commons_license][Creative Commons
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Attribution Alone licence]].
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* Programming
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I am currently developing [[https://git.marvid.fr/scolobb/dds][dds]], a home-made toolkit for discrete
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dynamical systems in [[https://racket-lang.org/][Racket]], a modern Lisp dialect.
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In the past, I wrote many lines of Haskell, C++, and Python. Here
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is [[https://github.com/scolobb][my GitHub profile]].
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* Roles
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I manage the work group on [[https://en.wikipedia.org/wiki/Personalized_medicine][personalized medicine]] /Axe transverse
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Médecine personnalisée/ at IBISC together with [[https://www.ibisc.univ-evry.fr/~zehraoui/Farida_Zehraoui.html][Farida Zehraoui]].
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I am a [[https://mcb.peercommunityin.org/public/user_public_page?userId=439][recommender]] for [[https://mcb.peercommunityin.org/][Peer Community In Mathematical and
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Computational Biology]].
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I am member of the editorial board of the [[http://www.math.md/publications/csjm/][Computer Science Journal
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of Moldova]].
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I am in charge with the first year of the master's program M1
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Computer & Network Systems ([[https://www.universite-paris-saclay.fr/formation/master/informatique/m1-computer-network-systems][M1 CNS]], in French) together with
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[[https://ibisc.univ-evry.fr/~janodet/][Jean-Christophe Janodet]].
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I am an elected member of the [[https://www.univ-evry.fr/recherche/commission-de-la-recherche.html][/Research Commission/]] of
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Université d'Évry.
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I am an elected member of the /Council of the [[https://www.universite-paris-saclay.fr/en/graduate-schools][Graduate School
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"Computer Science"]]/ of the Paris-Saclay University.
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I am an elected member of the /Council of IBISC laboratory/.
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I co-organise with [[https://info-evry.fr/][Association Info Évry]] the Évry site of the yearly
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night hackathon [[https://www.nuitdelinfo.com/][/Nuit de l'Info/]].
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I am member of the /Council for Digital Ressources/ (Conseil des
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Utilisateurs du Numérique) of the Université d'Évry.
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* Past positions
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- 2016–2017: /Postdoc/ with [[https://sites.google.com/site/nicolasglade/][Nicolas Glade]] on biomechanical modelling
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of the [[https://en.wikipedia.org/wiki/Cytoskeleton][cytoskeleton]], with additional focus on unconventional
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computing, theoretical biology, and epistemology.
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- 2015–2016: [[https://en.wikipedia.org/wiki/Attaché_Temporaire_d'Enseignement_et_de_Recherche][/ATER/]] at [[http://www.en.u-pec.fr/][Université Paris Est Créteil]].
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- 2012–2015: /PhD student/ at [[http://www.en.u-pec.fr/][Université Paris Est Créteil]],
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supervised by [[http://lacl.univ-paris12.fr/verlan/][Sergey Verlan]]. I defended [[file:content/phd/ivanov-phd.pdf][my thesis]] entitled /"On the Power and Universality of Biologically-inspired
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Models of Computation"/ in June 2015 ([[file:content/phd/ivanov-phd-beam.pdf][presentation slides]]).
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* Full contact information *Sergiu Ivanov* \\
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Room: 319 \\
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IBISC - [[https://www.openstreetmap.org/search?query=%C3%A9vry%20ibgbi][IBGBI]] – 3rd floor \\
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23, boulevard de France \\
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91034 Évry, France
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* Local Variables :noexport:
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# Local Variables:
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# org-link-file-path-type: relative
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# eval: (auto-fill-mode)
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# ispell-local-dictionary: "en"
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# End:
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