Sergiu Ivanov
d24dadd4cd
example: Stage all the figures.
2020-11-12 22:56:53 +01:00
Sergiu Ivanov
ce0925e41e
networks: Remove the old functions for building interaction graphs.
...
These functions mix interaction graphs derived from the expressions
defining the network with deriving the interactions from the dynamics,
which does not always yield the same result. Also, some functions
only worked for Boolean networks, including get-interaction-sign.
Additionally, these functions are among the first ones I wrote in dds,
so there are a couple of things which can be written in a better way.
2020-11-12 22:54:04 +01:00
Sergiu Ivanov
70de0ec718
README: Add the milestone about the domains.
2020-11-12 17:22:43 +01:00
Sergiu Ivanov
a8f4850139
README: Expand the milestone about interaction graphs.
2020-11-12 17:22:17 +01:00
Sergiu Ivanov
99c74ba659
README: Expand the Scribble milestone to types and include more details.
2020-11-12 17:08:00 +01:00
Sergiu Ivanov
7de4c5ef71
README: Add the Roadmap.
2020-11-12 16:40:24 +01:00
Sergiu Ivanov
60be01d979
networks: Fix and simplify the comment of Inferring interaction graphs.
2020-11-12 01:11:15 +01:00
Sergiu Ivanov
5ece1f6c88
networks: list-interactions → list-syntactic-interactions.
2020-11-12 01:09:18 +01:00
Sergiu Ivanov
681ed0e732
networks: Simplify and fix the comment of update.
2020-11-12 01:08:10 +01:00
Sergiu Ivanov
88caecb98a
networks: Properly export dynamics.
2020-11-12 01:07:41 +01:00
Sergiu Ivanov
6d77052ed6
network: Explain why a network does not include the domains.
2020-11-12 01:05:27 +01:00
Sergiu Ivanov
5fd1e5cb5b
Revert "BREAKING: Make domains part of the network."
...
This reverts commit f414ae8966
2020-11-12 01:03:48 +01:00
Sergiu Ivanov
f414ae8966
BREAKING: Make domains part of the network.
...
I always keep bringing domains about for my network, which complicates
things a lot. This commit packages the domains within the network,
which will break a lot of stuff :-) The following commits will fix it all.
2020-11-12 00:58:58 +01:00
Sergiu Ivanov
cde6ee30fa
networks: build-interaction-graph → build-syntactic-interaction-graph.
...
The interaction graph is *not* usually defined in this way.
2020-11-11 15:51:24 +01:00
Sergiu Ivanov
af581f91df
example: Illustrate build-reduced-state-graph.
2020-11-11 00:37:12 +01:00
Sergiu Ivanov
3b8ce5eb84
rs: Add pretty-print-reduced-state-graph.
2020-11-11 00:36:49 +01:00
Sergiu Ivanov
ce0d5023bf
rs: Add build-reduced-state-graph.
2020-11-10 09:42:50 +01:00
Sergiu Ivanov
4f3eef0ba3
rs: Fix the comment of build-interactive-process-graph.
...
It doesn't pad the context sequence with empty contexts any more.
2020-11-09 23:24:43 +01:00
Sergiu Ivanov
dbbfc74eaf
rs: Don't implicitly complete all context sequences with empty contexts.
2020-11-09 23:13:24 +01:00
Sergiu Ivanov
2b60b23bf1
networks: Add group-truth-table-by-nai.
2020-11-08 23:31:11 +01:00
Sergiu Ivanov
59c7108510
networks: Add and illustrate sbn-interaction-graph.
2020-11-08 22:56:46 +01:00
Sergiu Ivanov
bc9a2bd5f8
networks: Add and illustrate pretty-print-tbn-interaction-graph.
2020-11-08 22:30:29 +01:00
Sergiu Ivanov
7af1bb8d79
networks: Add tbn-interaction-graph and explain in example.
2020-11-08 20:29:00 +01:00
Sergiu Ivanov
000c2eeba7
networks: Fix the test for print-org-sbn.
2020-11-05 23:23:48 +01:00
Sergiu Ivanov
a7a1ad49a1
example: Illustrate printing TBN and SBN to Org tables.
2020-11-04 00:07:08 +01:00
Sergiu Ivanov
79d3ab1ea6
networks: Add print-org-sbn.
2020-11-04 00:06:48 +01:00
Sergiu Ivanov
ed44d3666c
utils: Streamline multi-split-at.
2020-11-03 23:58:26 +01:00
Sergiu Ivanov
c4a5327b4b
networks: Fix the tests for print-org-tbn.
2020-11-02 23:05:05 +01:00
Sergiu Ivanov
af5a9d07a9
networks: Add print-org-tbn.
2020-11-02 17:58:45 +01:00
Sergiu Ivanov
0edda89642
networks: Add compact-tbn.
2020-11-02 00:08:49 +01:00
Sergiu Ivanov
722b45d098
utils: Remove hash-filter.
...
Use for/hash with #:when or #:unless instead.
2020-11-01 23:43:23 +01:00
Sergiu Ivanov
2a0cfb4dcc
network,compact-tbf: Use for/hash instead of hash-filter.
2020-11-01 23:42:51 +01:00
Sergiu Ivanov
f7e44df117
networks: Add compact-tbf.
2020-10-31 00:48:00 +01:00
Sergiu Ivanov
a00f21ad18
utils,hash-filter: Say that how the comparison predicate of the result is determined.
2020-10-31 00:27:16 +01:00
Sergiu Ivanov
73756d8974
utils: Add hash-filter.
2020-10-31 00:19:38 +01:00
Sergiu Ivanov
208dc12060
networks: Add normalize-tbn.
2020-10-24 23:51:56 +02:00
Sergiu Ivanov
11ecbf84dc
networks: Add normalized-tbn?.
2020-10-24 23:15:13 +02:00
Sergiu Ivanov
e79fef9118
networks: Add build-tbn-state-graph and use it in example.
2020-10-23 00:17:36 +02:00
Sergiu Ivanov
485b859f34
example: Show an example of read-org-sbn.
2020-10-22 10:39:27 +02:00
Sergiu Ivanov
2dd38fa4dc
networks: Add read-org-sbn.
2020-10-22 00:59:58 +02:00
Sergiu Ivanov
a3f3a5616d
networks: Factor parse-org-tbn out from read-org-tbn.
2020-10-22 00:52:06 +02:00
Sergiu Ivanov
20b3357910
example: Show how to build state graphs of TBN.
2020-10-18 23:10:43 +02:00
Sergiu Ivanov
b3d2ed94ec
networks: Add build-full-01-state-graph and build-full-01-state-graph-annotated.
2020-10-18 22:57:08 +02:00
Sergiu Ivanov
afa84d00b5
networks: Add build-all-01-states.
2020-10-18 22:52:45 +02:00
Sergiu Ivanov
85feab230f
networks: Add make-01-domains.
2020-10-18 22:52:05 +02:00
Sergiu Ivanov
5f80bd0443
networks: Add read-org-tbn.
2020-10-17 23:51:51 +02:00
Sergiu Ivanov
7555db41ef
networks, tbn->network: Add tests for SBN.
2020-10-17 00:55:20 +02:00
Sergiu Ivanov
218ecfc009
networks: Add sbn? and make-sbn.
2020-10-17 00:45:40 +02:00
Sergiu Ivanov
c2237ecdbc
networks: Add tbn->network.
2020-10-16 00:55:26 +02:00
Sergiu Ivanov
119fcdb8df
networks: Add make-tbn.
2020-10-15 00:33:18 +02:00
