Sergiu Ivanov
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c5dda2e6c7
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Add the GNU GPL licence file.
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2020-03-03 14:47:15 +01:00 |
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Sergiu Ivanov
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19e831b1a9
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REAMDE.org: Add.
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2020-03-03 14:44:55 +01:00 |
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Sergiu Ivanov
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2437dec620
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example: Explain why states for reaction systems include full context sequences.
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2020-03-03 01:03:33 +01:00 |
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Sergiu Ivanov
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cbdfdabe7a
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example: Illustrate building interactive processes.
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2020-03-03 01:01:21 +01:00 |
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Sergiu Ivanov
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0d73b33ff3
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example: Some updates to the state graph of the reaction system.
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2020-03-03 01:01:00 +01:00 |
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Sergiu Ivanov
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d958533d2c
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rs: Make build-interactive-process run for one extra step.
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2020-03-03 01:00:21 +01:00 |
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Sergiu Ivanov
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9ce3040240
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rs: Add build-interactive-process.
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2020-03-03 00:51:53 +01:00 |
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Sergiu Ivanov
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9cfab2e45d
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rs: build-interactive-process -> build-interactive-process-graph.
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2020-03-03 00:27:52 +01:00 |
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Sergiu Ivanov
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fcb4474858
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rs: Explain why we need to print the whole context sequence.
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2020-03-03 00:26:45 +01:00 |
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Sergiu Ivanov
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227dfff14a
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example: Illustrate state graphs for reaction systems.
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2020-03-03 00:25:26 +01:00 |
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Sergiu Ivanov
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cf99c8acf3
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rs: Add pretty-print-state and use it in update-graph.
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2020-03-03 00:25:06 +01:00 |
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Sergiu Ivanov
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f22d42f98c
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rs: Add pretty-print-state-graph.
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2020-03-03 00:12:45 +01:00 |
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Sergiu Ivanov
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a3967d8bf8
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utils: Move pretty-print-modalities as pretty-print-set-sets from networks.
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2020-03-02 23:59:37 +01:00 |
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Sergiu Ivanov
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de9b703b44
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rs: Add build-interactive-process.
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2020-03-02 23:50:32 +01:00 |
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Sergiu Ivanov
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d753409a2f
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rs,state: Explicitly state what happens when there are no more contexts.
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2020-03-02 23:42:03 +01:00 |
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Sergiu Ivanov
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b5f5eb55fc
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utils: Move drop-first-last from rs and add list-sets->list-strings.
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2020-03-02 23:39:27 +01:00 |
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Sergiu Ivanov
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c0d36a34a7
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rs: Add read-ctx and illustrate it in example.org.
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2020-03-02 23:11:26 +01:00 |
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Sergiu Ivanov
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171147ad5e
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rs: Add read-context-sequence.
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2020-03-02 23:03:10 +01:00 |
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Sergiu Ivanov
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42b7dce359
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utils: Move read-symbol-list from rs.
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2020-03-02 23:00:46 +01:00 |
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Sergiu Ivanov
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dbfa560081
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utils: read-org-table -> read-org-sexp.
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2020-03-02 18:42:54 +01:00 |
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Sergiu Ivanov
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a9fc272c13
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example,munch-sexp: Rename the parameter tab -> sexp.
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2020-03-02 18:38:39 +01:00 |
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Sergiu Ivanov
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e07c5c239c
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example: munch-table -> munch-sexp.
This code block can be used to prepare any sexp Org-mode produces.
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2020-03-02 18:36:26 +01:00 |
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Sergiu Ivanov
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0bceb820df
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rs: Add the dynamics.
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2020-03-02 18:32:11 +01:00 |
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Sergiu Ivanov
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868988c966
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rs,union-products: Return an empty set when no reaction names are given.
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2020-03-02 18:31:02 +01:00 |
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Sergiu Ivanov
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6427af17c8
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example: Minor image change.
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2020-03-02 18:20:24 +01:00 |
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Sergiu Ivanov
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141080d1c6
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generic: Use collect-by-key/sets to collect the labels for state graphs.
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2020-03-02 18:18:23 +01:00 |
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Sergiu Ivanov
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29d8e152d9
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utils: ht-values:list->set -> ht-values/list->set
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2020-03-02 18:17:05 +01:00 |
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Sergiu Ivanov
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45db731859
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utils: Make the contract of collect-by-key more specific.
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2020-03-02 18:16:25 +01:00 |
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Sergiu Ivanov
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740918a542
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utils: Add collect-by-key/sets.
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2020-03-02 18:15:41 +01:00 |
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Sergiu Ivanov
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64ca8f4bf1
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utils: Add ht-values:list->set.
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2020-03-02 18:04:59 +01:00 |
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Sergiu Ivanov
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ac7ce12a9d
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networks: Remove a custom definition of dds-step-one.
This method now falls back to dds-step-one-annotated.
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2020-03-02 12:12:57 +01:00 |
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Sergiu Ivanov
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736f210c41
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generic: Make dds-step-one fall back to dds-step-one-annotated.
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2020-03-02 12:11:09 +01:00 |
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Sergiu Ivanov
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db88987c13
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example: Show how to apply reaction systems.
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2020-03-01 21:14:18 +01:00 |
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Sergiu Ivanov
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77c0106ea2
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rs: Add some functions for showing RS as Org tables.
Also add an example to example.org.
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2020-03-01 21:10:01 +01:00 |
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Sergiu Ivanov
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0051380f2b
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rs: Add a test for ht-str-triples->rs.
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2020-03-01 20:46:06 +01:00 |
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Sergiu Ivanov
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afc043d22d
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rs: Fix the introduction to the section on Org-mode interop.
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2020-03-01 20:43:33 +01:00 |
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Sergiu Ivanov
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c33cce731f
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rs: Convert to untyped racket with contracts.
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2020-03-01 20:41:11 +01:00 |
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Sergiu Ivanov
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d2121bd5e6
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rs: Add unorg-rs and showcase it in example.org.
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2020-03-01 20:26:16 +01:00 |
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Sergiu Ivanov
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02d5384674
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rs: Switch to #lang racket, but keep the types where they work.
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2020-03-01 20:25:01 +01:00 |
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Sergiu Ivanov
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f16747d157
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rs: Add section "Org-mode interaction".
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2020-03-01 20:20:16 +01:00 |
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Sergiu Ivanov
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a77261c424
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rs: Make reaction transparent.
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2020-03-01 19:54:53 +01:00 |
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Sergiu Ivanov
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5c13b468e3
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rs: Add apply-rs.
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2020-03-01 19:51:53 +01:00 |
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Sergiu Ivanov
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86256cd47e
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rs: Add union-products.
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2020-03-01 19:47:38 +01:00 |
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Sergiu Ivanov
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3732d4897e
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rs,list-enabled: Made the type signature more explicit.
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2020-03-01 19:24:32 +01:00 |
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Sergiu Ivanov
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d7e189eef0
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rs: Add list-enabled.
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2020-03-01 19:20:24 +01:00 |
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Sergiu Ivanov
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0cb57196c5
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rs: Add ReactionSystem.
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2020-03-01 19:19:58 +01:00 |
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Sergiu Ivanov
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f62592574b
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rs: Export the Species type.
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2020-03-01 19:07:16 +01:00 |
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Sergiu Ivanov
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bb247d9eb8
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rs: Start.
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2020-03-01 19:05:28 +01:00 |
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Sergiu Ivanov
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007c5b96bf
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example: Show what happens when multiple modalities cause the same state transition.
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2020-03-01 18:01:53 +01:00 |
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Sergiu Ivanov
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9143f6f9fc
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networks: Add pretty-print-modalities and use it for state graphs.
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2020-03-01 17:57:58 +01:00 |