Sergiu Ivanov
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ac2d03f953
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Add some tests for building signed interaction graphs from networks.
Previously I only had functions for building interaction graphs from
forms. These do not play well with networks randomly generated from
truth tables.
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2020-03-22 21:08:45 +01:00 |
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Sergiu Ivanov
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b79bae9d67
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example: Update the randomly generated network.
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2020-03-22 21:03:20 +01:00 |
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Sergiu Ivanov
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27fa176d0f
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utils: Make read-org-variable-mapping return an immutable hash.
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2020-03-22 21:01:51 +01:00 |
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Sergiu Ivanov
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b0eb81b051
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networks: Add build-signed-interaction-graph and build-boolean-signed-interaction-graph.
No tests yet.
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2020-03-22 21:00:12 +01:00 |
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Sergiu Ivanov
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a77d42af85
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networks: Functions for interaction graph explicitly say they use forms.
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2020-03-22 20:45:11 +01:00 |
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Sergiu Ivanov
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65445e6ba8
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networks: Make get-interaction-sign take a network, not a form.
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2020-03-22 20:43:14 +01:00 |
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Sergiu Ivanov
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b38bebb67b
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example: Add some examples for random functions and networks.
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2020-03-22 20:38:32 +01:00 |
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Sergiu Ivanov
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5330336b6d
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networks: Use '+ and '- as labels in the signed interaction graph.
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2020-03-22 20:26:04 +01:00 |
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Sergiu Ivanov
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e7b35a451c
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Add the example on tabulating Boolean networks.
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2020-03-22 20:22:23 +01:00 |
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Sergiu Ivanov
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32d117a155
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example: Network functions -> Tabulating functions and networks.
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2020-03-22 19:36:07 +01:00 |
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Sergiu Ivanov
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401f895dd2
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networks: Make build-all-states order the variables.
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2020-03-22 19:34:08 +01:00 |
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Sergiu Ivanov
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cd11bcc330
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networks: Export and test the functions for generation of random networks.
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2020-03-22 19:28:44 +01:00 |
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Sergiu Ivanov
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c823001492
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networks: Add tabulate-network and tabulate-boolean-network.
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2020-03-22 19:22:54 +01:00 |
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Sergiu Ivanov
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5fd16e4465
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networks: Add random-network, random-boolean-network, random-boolean-networks/vars.
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2020-03-22 18:40:50 +01:00 |
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Sergiu Ivanov
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75b19c7977
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networks: Make sectioning more fine-grained.
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2020-03-22 14:40:23 +01:00 |
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Sergiu Ivanov
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aa7ba6de8a
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network-test: Fix some indentation.
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2020-03-22 14:36:02 +01:00 |
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Sergiu Ivanov
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a40106e47c
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networks: Add random-function/state and random-boolean-function/state.
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2020-03-22 14:35:26 +01:00 |
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Sergiu Ivanov
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5358f9bf57
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networks: Add tabulate-state and tabulate-state/boolean.
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2020-03-22 14:34:40 +01:00 |
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Sergiu Ivanov
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f0ac9223e4
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utils: Don't forget hash->list/ordered (the tests were broken).
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2020-03-21 19:23:30 +01:00 |
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Sergiu Ivanov
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9113a788a9
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networks: Make network? more precise.
Require that the hash table maps variables to procedures, instead of
requiring nothing of the values of the hash table.
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2020-03-21 19:19:23 +01:00 |
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Sergiu Ivanov
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9682049df5
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networks: Remove network/c.
I've never used it.
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2020-03-21 19:18:45 +01:00 |
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Sergiu Ivanov
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8505d2d590
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utils: Add hash->list/ordered.
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2020-03-21 19:16:24 +01:00 |
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Sergiu Ivanov
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a55b671248
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networks: Make the contracts on functions dealing with Boolean tables more precise.
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2020-03-20 22:29:33 +01:00 |
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Sergiu Ivanov
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bba2dfad12
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networks: Split the randomness functions into their own section.
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2020-03-20 22:22:33 +01:00 |
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Sergiu Ivanov
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6c75a073c0
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networks: Add random-boolean-table, random-boolean-function, random-boolean-function/list.
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2020-03-20 22:15:29 +01:00 |
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Sergiu Ivanov
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435ee34acb
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utils: Refactor update-graph.
Make update-graph follow a little bit more the guidelines here:
https://docs.racket-lang.org/style/Choosing_the_Right_Construct.html
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2020-03-20 21:42:10 +01:00 |
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Sergiu Ivanov
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519f3759ea
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networks,enumerate-boolean-tables: Use boolean-power/stream.
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2020-03-20 16:43:14 +01:00 |
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Sergiu Ivanov
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59d5b040f4
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networks: Remove n from boolean-power-n and boolean-power-n/stream.
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2020-03-20 16:41:26 +01:00 |
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Sergiu Ivanov
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e89163d044
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networks: Add boolean-power-n/stream.
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2020-03-20 16:40:15 +01:00 |
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Sergiu Ivanov
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36c26d2a1f
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networks: Export and test boolean-power-n.
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2020-03-20 16:38:32 +01:00 |
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Sergiu Ivanov
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34fbc516e2
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utils: Add cartesian-product/stream.
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2020-03-20 16:07:34 +01:00 |
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Sergiu Ivanov
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9502a9e981
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utils: Add in-random.
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2020-03-20 01:19:14 +01:00 |
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Sergiu Ivanov
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f09f24d2dd
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networks: Use streams for enumerating Boolean functions.
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2020-03-20 00:15:51 +01:00 |
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Sergiu Ivanov
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2c79ca3781
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networks: Add enumerate-boolean-tables, enumerate-boolean-functions, and enumerate-boolean-functions/list.
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2020-03-19 23:40:08 +01:00 |
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Sergiu Ivanov
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80ef41eaa4
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networks,table->function: Store the function in a local binding.
This avoids reconstructing the function from the table every time the
lambda is called.
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2020-03-19 23:17:23 +01:00 |
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Sergiu Ivanov
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9bcb5681ce
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networks: Add table->function and table->function/list.
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2020-03-18 21:40:09 +01:00 |
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Sergiu Ivanov
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572bef8a7b
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networks: Add tabulate and illustrate it in example.
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2020-03-15 16:12:35 +01:00 |
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Sergiu Ivanov
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a8ee7cc523
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utils: Add procedure-fixed-arity?.
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2020-03-15 16:12:05 +01:00 |
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Sergiu Ivanov
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f005d77516
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example: Explain setting network variables to constants.
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2020-03-04 23:51:11 +01:00 |
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Sergiu Ivanov
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07e1a73b50
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networks: Add read-org-network-make-asyn and read-org-network-make-syn.
Also add some shortcuts.
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2020-03-04 18:54:36 +01:00 |
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Sergiu Ivanov
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f8dc65df0a
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example: Promote Reaction Systems to top-level heading.
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2020-03-04 18:21:20 +01:00 |
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Sergiu Ivanov
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0cf05acb21
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Use a headline instead of #+TITLE:
Gitea seems to not handle Org-mode options either.
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2020-03-03 17:50:26 +01:00 |
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Sergiu Ivanov
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20b629443a
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Remove Emacs Local Variables from README.org.
Gitea doesn't know not to render :noexport: tags (which is fine).
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2020-03-03 17:48:21 +01:00 |
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Sergiu Ivanov
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c5dda2e6c7
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Add the GNU GPL licence file.
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2020-03-03 14:47:15 +01:00 |
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Sergiu Ivanov
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19e831b1a9
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REAMDE.org: Add.
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2020-03-03 14:44:55 +01:00 |
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Sergiu Ivanov
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2437dec620
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example: Explain why states for reaction systems include full context sequences.
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2020-03-03 01:03:33 +01:00 |
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Sergiu Ivanov
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cbdfdabe7a
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example: Illustrate building interactive processes.
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2020-03-03 01:01:21 +01:00 |
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Sergiu Ivanov
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0d73b33ff3
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example: Some updates to the state graph of the reaction system.
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2020-03-03 01:01:00 +01:00 |
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Sergiu Ivanov
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d958533d2c
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rs: Make build-interactive-process run for one extra step.
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2020-03-03 01:00:21 +01:00 |
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Sergiu Ivanov
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9ce3040240
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rs: Add build-interactive-process.
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2020-03-03 00:51:53 +01:00 |
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