Sergiu Ivanov
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76bff909e9
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example: Reran some code blocks in the section on reaction systems.
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2020-05-16 00:18:36 +02:00 |
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Sergiu Ivanov
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8dbeaa9e55
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read-context-sequence: Replace read-org-sexp by string->any.
read-org-sexp changed a couple commits earlier, so it doesn't work in
the same way as before in read-context-sequence.
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2020-05-16 00:16:44 +02:00 |
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Sergiu Ivanov
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c5d2ff629c
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Explain how to install dds locally and use shorter require statements.
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2020-05-16 00:01:36 +02:00 |
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Sergiu Ivanov
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82def3b704
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networks: Ensure that all variables always appear in the interaction graphs.
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2020-05-14 01:06:17 +02:00 |
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Sergiu Ivanov
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6c707ddba7
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build-signed-interaction-graph: Use _.
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2020-05-14 00:56:46 +02:00 |
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Sergiu Ivanov
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32b2e41634
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example: Explain how to read back and explore networks from Org tables.
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2020-05-08 23:33:43 +02:00 |
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Sergiu Ivanov
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036b9b7973
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utils: Make read-org-sexp recursively apply string->any.
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2020-05-06 23:03:15 +02:00 |
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Sergiu Ivanov
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502e564fc7
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Add map-sexp.
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2020-04-14 15:57:26 +02:00 |
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Sergiu Ivanov
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43a2f1aff0
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utils: Handle Booleans when reading Org-mode tables.
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2020-04-05 22:35:21 +02:00 |
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Sergiu Ivanov
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cdca40eb40
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example: Random networks: unorg -> unorgv.
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2020-03-25 23:29:01 +01:00 |
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Sergiu Ivanov
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faa3d9ff00
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networks: Remove unorg-syn and unorg-asyn.
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2020-03-25 23:21:16 +01:00 |
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Sergiu Ivanov
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319b15d956
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networks: Remove ppsg and ppsgb.
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2020-03-25 23:15:37 +01:00 |
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Sergiu Ivanov
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e8e3a71d87
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networks: Remove nn.
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2020-03-25 23:05:28 +01:00 |
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Sergiu Ivanov
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dfb882d891
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networks: Remove st and stb.
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2020-03-25 00:31:23 +01:00 |
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Sergiu Ivanov
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086f4c4949
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utils: Add unorg.
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2020-03-25 00:19:28 +01:00 |
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Sergiu Ivanov
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a8a981098f
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utils: unorg -> unorgv
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2020-03-25 00:16:29 +01:00 |
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Sergiu Ivanov
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62ae1e3af1
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utils: Convert dotit and unorg to functions.
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2020-03-25 00:03:26 +01:00 |
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Sergiu Ivanov
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c4af42a2f6
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example: Update a call to build-boolean-signed-interaction-graph.
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2020-03-24 23:59:11 +01:00 |
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Sergiu Ivanov
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8bc2a582a6
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utils: Remove sgfy.
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2020-03-24 23:47:20 +01:00 |
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Sergiu Ivanov
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87dc89ee6f
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rs: Actually remove the macros.
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2020-03-24 23:38:07 +01:00 |
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Sergiu Ivanov
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14688a9bae
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rs: Remove macros, update example.
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2020-03-24 23:22:20 +01:00 |
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Sergiu Ivanov
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4c6f3af2a9
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rs: Add read-org-rs and define unorg-rs as a synonym for it.
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2020-03-24 21:31:01 +01:00 |
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Sergiu Ivanov
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7f214266d0
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rs: Don't use unorg macros internally.
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2020-03-24 21:20:08 +01:00 |
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Sergiu Ivanov
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502fcb18bb
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utils: Simplify read-org-variable-mapping.
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2020-03-24 21:17:05 +01:00 |
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Sergiu Ivanov
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ac8c999272
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networks: Add table->network.
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2020-03-24 00:18:39 +01:00 |
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Sergiu Ivanov
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f1514fffe3
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utils: Add lists-transpose.
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2020-03-23 22:47:52 +01:00 |
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Sergiu Ivanov
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df042493d9
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utils: Add multi-split-at.
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2020-03-23 22:32:39 +01:00 |
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Sergiu Ivanov
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9961dc7c8b
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networks: Add "and networks" to "Constructing functions".
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2020-03-23 22:31:58 +01:00 |
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Sergiu Ivanov
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ac2d03f953
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Add some tests for building signed interaction graphs from networks.
Previously I only had functions for building interaction graphs from
forms. These do not play well with networks randomly generated from
truth tables.
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2020-03-22 21:08:45 +01:00 |
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Sergiu Ivanov
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b79bae9d67
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example: Update the randomly generated network.
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2020-03-22 21:03:20 +01:00 |
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Sergiu Ivanov
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27fa176d0f
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utils: Make read-org-variable-mapping return an immutable hash.
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2020-03-22 21:01:51 +01:00 |
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Sergiu Ivanov
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b0eb81b051
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networks: Add build-signed-interaction-graph and build-boolean-signed-interaction-graph.
No tests yet.
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2020-03-22 21:00:12 +01:00 |
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Sergiu Ivanov
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a77d42af85
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networks: Functions for interaction graph explicitly say they use forms.
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2020-03-22 20:45:11 +01:00 |
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Sergiu Ivanov
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65445e6ba8
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networks: Make get-interaction-sign take a network, not a form.
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2020-03-22 20:43:14 +01:00 |
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Sergiu Ivanov
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b38bebb67b
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example: Add some examples for random functions and networks.
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2020-03-22 20:38:32 +01:00 |
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Sergiu Ivanov
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5330336b6d
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networks: Use '+ and '- as labels in the signed interaction graph.
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2020-03-22 20:26:04 +01:00 |
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Sergiu Ivanov
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e7b35a451c
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Add the example on tabulating Boolean networks.
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2020-03-22 20:22:23 +01:00 |
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Sergiu Ivanov
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32d117a155
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example: Network functions -> Tabulating functions and networks.
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2020-03-22 19:36:07 +01:00 |
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Sergiu Ivanov
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401f895dd2
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networks: Make build-all-states order the variables.
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2020-03-22 19:34:08 +01:00 |
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Sergiu Ivanov
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cd11bcc330
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networks: Export and test the functions for generation of random networks.
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2020-03-22 19:28:44 +01:00 |
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Sergiu Ivanov
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c823001492
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networks: Add tabulate-network and tabulate-boolean-network.
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2020-03-22 19:22:54 +01:00 |
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Sergiu Ivanov
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5fd16e4465
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networks: Add random-network, random-boolean-network, random-boolean-networks/vars.
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2020-03-22 18:40:50 +01:00 |
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Sergiu Ivanov
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75b19c7977
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networks: Make sectioning more fine-grained.
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2020-03-22 14:40:23 +01:00 |
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Sergiu Ivanov
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aa7ba6de8a
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network-test: Fix some indentation.
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2020-03-22 14:36:02 +01:00 |
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Sergiu Ivanov
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a40106e47c
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networks: Add random-function/state and random-boolean-function/state.
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2020-03-22 14:35:26 +01:00 |
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Sergiu Ivanov
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5358f9bf57
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networks: Add tabulate-state and tabulate-state/boolean.
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2020-03-22 14:34:40 +01:00 |
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Sergiu Ivanov
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f0ac9223e4
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utils: Don't forget hash->list/ordered (the tests were broken).
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2020-03-21 19:23:30 +01:00 |
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Sergiu Ivanov
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9113a788a9
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networks: Make network? more precise.
Require that the hash table maps variables to procedures, instead of
requiring nothing of the values of the hash table.
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2020-03-21 19:19:23 +01:00 |
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Sergiu Ivanov
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9682049df5
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networks: Remove network/c.
I've never used it.
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2020-03-21 19:18:45 +01:00 |
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Sergiu Ivanov
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8505d2d590
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utils: Add hash->list/ordered.
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2020-03-21 19:16:24 +01:00 |
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