Sergiu Ivanov
83deda31a9
example: Stage a forgotten figure.
2020-11-26 23:20:58 +01:00
Sergiu Ivanov
dae4f6570f
example: Update the section on Boolean networks.
2020-11-26 23:20:44 +01:00
Sergiu Ivanov
8f9740d2d7
network: Fix the tests for interaction graphs.
2020-11-26 22:36:19 +01:00
Sergiu Ivanov
cdb2149358
network: Fix table->network.
2020-11-26 22:25:25 +01:00
Sergiu Ivanov
a074258b1a
networks: Rename and generalize state graph functions.
...
build-full-state-graph and build-full-state-graph-annotated now
retrieve the domains from the network and are not limited to Boolean
state graphs.
2020-11-26 22:13:57 +01:00
Sergiu Ivanov
34ceccc446
networks: Fix build-syntactic-interaction-graph.
2020-11-23 23:16:11 +01:00
Sergiu Ivanov
fbd6ded717
networks: Fix list-syntactic-interactions.
2020-11-23 23:09:23 +01:00
Sergiu Ivanov
0a4035d9f7
networks: Fix the tests of make-boolean-network-form.
2020-11-22 23:00:26 +01:00
Sergiu Ivanov
f016fbb0ca
networks: Fix the tests for network-form->network.
2020-11-22 22:58:21 +01:00
Sergiu Ivanov
354fad2b1d
network: Roll back update to its previous version.
...
I thought I was clever to rewrite update using for/hash, but in fact
this new version only included the updated variables in the new
state :D
2020-11-22 22:50:29 +01:00
Sergiu Ivanov
3abf548ac2
networks: Bug in update.
2020-11-22 22:44:04 +01:00
Sergiu Ivanov
eb3e851a9d
networks: Make network and network-form transparent.
2020-11-22 22:38:45 +01:00
Sergiu Ivanov
ff6fa2c88b
network: Fix the test for make-boolean-network.
2020-11-22 22:11:25 +01:00
Sergiu Ivanov
b38adc89cf
networks: Don't use tabulate-boolean-network.
2020-11-22 22:08:45 +01:00
Sergiu Ivanov
e4751c6ed2
networks: Don't re-export network-form?.
2020-11-22 22:05:41 +01:00
Sergiu Ivanov
0085eb964b
networks: Fix make-boolean-network.
2020-11-22 22:02:56 +01:00
Sergiu Ivanov
5475bc5fbf
networks: Fix Random networks.
2020-11-22 21:58:00 +01:00
Sergiu Ivanov
2c68055818
networks: Fix constructing functions and networks.
2020-11-22 21:42:41 +01:00
Sergiu Ivanov
3a2453c92e
networks: Fix tabulating functions and networks.
2020-11-22 21:41:06 +01:00
Sergiu Ivanov
fd651ba4cc
network,Dynamics: Fixes.
2020-11-22 21:35:19 +01:00
Sergiu Ivanov
6cfa66694d
networks: Remove read-org-network-make-asyn and read-org-network-make-syn.
...
I think I initially intended these functions for Boolean networks.
I'll see if I add back something similar to these when I will be
fixing example.org.
2020-11-22 21:33:16 +01:00
Sergiu Ivanov
97026a2a42
networks: Say that domain mappings may be empty.
2020-11-22 21:30:50 +01:00
Sergiu Ivanov
27bb25c201
networks: Fix signed interaction graphs.
2020-11-22 21:26:26 +01:00
Sergiu Ivanov
3e35b8e0ab
networks, IG: Use forms->boolean-network.
...
IG = interaction graph
2020-11-22 21:24:05 +01:00
Sergiu Ivanov
ec3c74b5e2
networks: Add forms->boolean-network.
2020-11-22 21:21:31 +01:00
Sergiu Ivanov
a4979d9c9f
networks: Add make-boolean-network-form.
2020-11-22 21:18:22 +01:00
Sergiu Ivanov
d5e1819fff
networks: Add make-boolean-network.
2020-11-22 21:18:14 +01:00
Sergiu Ivanov
6fd3d41c7e
networks: Update the IG-related functions.
...
IG = interaction graph
2020-11-22 21:06:33 +01:00
Sergiu Ivanov
393f1d2bba
networks: Move domain-mapping/c to Basic definitions.
2020-11-22 20:46:53 +01:00
Sergiu Ivanov
cb208a66fc
networks: Add one more comment on syntactic IG vs. IG.
2020-11-22 20:42:30 +01:00
Sergiu Ivanov
b8f29d905d
networks: Remove make-network-from-forms.
2020-11-22 00:29:36 +01:00
Sergiu Ivanov
236dca704d
networks: Update network-form->network.
2020-11-22 00:27:56 +01:00
Sergiu Ivanov
ed03015e81
network: Add domains to network-form.
2020-11-22 00:24:15 +01:00
Sergiu Ivanov
cfe710e6b2
network: Don't use make-network-from-functions in basic definitions.
2020-11-22 00:08:46 +01:00
Sergiu Ivanov
11d75bcc89
networks: Rewrite update.
2020-11-21 23:28:30 +01:00
Sergiu Ivanov
6560dcbe6c
networks: Move booleanize-state before its own test case.
2020-11-21 23:15:17 +01:00
Sergiu Ivanov
a654ac5896
network: Remove make-network-from-forms.
2020-11-21 23:13:50 +01:00
Sergiu Ivanov
004e24d83c
README: Remove the TODO item about the interaction graphs.
2020-11-21 23:04:14 +01:00
Sergiu Ivanov
a3ac1c7fcd
networks: Include domains into the network.
...
This change is breaking. The following commits will progressively fix
the whole network module.
2020-11-21 22:53:45 +01:00
Sergiu Ivanov
f1a1123cc4
networks: Make it possible to skip expensive test cases.
...
At the moment, this is particularly for skipping the tests
constructing the interaction graphs.
2020-11-21 00:53:11 +01:00
Sergiu Ivanov
097c5a7f09
example: Update the presentation of the functions concerning the interaction graphs.
2020-11-19 23:48:50 +01:00
Sergiu Ivanov
fe0fbc3ed0
networks: Add build-signed-interaction-graph/form.
2020-11-19 00:22:01 +01:00
Sergiu Ivanov
0345cd3648
networks: Add build-interaction-graph/form.
2020-11-19 00:14:54 +01:00
Sergiu Ivanov
8e100c2e8b
networks: Add build-signed-interaction-graph.
2020-11-18 01:11:37 +01:00
Sergiu Ivanov
0313d81c25
network: Add another self-loop test for get-interaction-sign.
2020-11-18 01:08:40 +01:00
Sergiu Ivanov
c55113f27e
network: Bug fix in get-interaction-sign.
2020-11-18 00:46:55 +01:00
Sergiu Ivanov
195d71ed4e
networks: Remove interaction? from the tests for get-interaction-sign.
2020-11-18 00:29:45 +01:00
Sergiu Ivanov
a8adc9fb57
README: Add a new TODO item for splitting network into two models.
2020-11-18 00:19:53 +01:00
Sergiu Ivanov
af8428d275
network,build-interaction-graph: Use in-list.
2020-11-18 00:13:00 +01:00
Sergiu Ivanov
d190f76fdf
networks: Add build-interaction-graph.
2020-11-18 00:09:15 +01:00
