Commit graph

701 commits

Author SHA1 Message Date
Sergiu Ivanov
95c0611e4f Add info.rkt. 2020-05-16 19:00:04 +02:00
Sergiu Ivanov
76bff909e9 example: Reran some code blocks in the section on reaction systems. 2020-05-16 00:18:36 +02:00
Sergiu Ivanov
8dbeaa9e55 read-context-sequence: Replace read-org-sexp by string->any.
read-org-sexp changed a couple commits earlier, so it doesn't work in
the same way as before in read-context-sequence.
2020-05-16 00:16:44 +02:00
Sergiu Ivanov
c5d2ff629c Explain how to install dds locally and use shorter require statements. 2020-05-16 00:01:36 +02:00
Sergiu Ivanov
82def3b704 networks: Ensure that all variables always appear in the interaction graphs. 2020-05-14 01:06:17 +02:00
Sergiu Ivanov
6c707ddba7 build-signed-interaction-graph: Use _. 2020-05-14 00:56:46 +02:00
Sergiu Ivanov
32b2e41634 example: Explain how to read back and explore networks from Org tables. 2020-05-08 23:33:43 +02:00
Sergiu Ivanov
036b9b7973 utils: Make read-org-sexp recursively apply string->any. 2020-05-06 23:03:15 +02:00
Sergiu Ivanov
502e564fc7 Add map-sexp. 2020-04-14 15:57:26 +02:00
Sergiu Ivanov
43a2f1aff0 utils: Handle Booleans when reading Org-mode tables. 2020-04-05 22:35:21 +02:00
Sergiu Ivanov
cdca40eb40 example: Random networks: unorg -> unorgv. 2020-03-25 23:29:01 +01:00
Sergiu Ivanov
faa3d9ff00 networks: Remove unorg-syn and unorg-asyn. 2020-03-25 23:21:16 +01:00
Sergiu Ivanov
319b15d956 networks: Remove ppsg and ppsgb. 2020-03-25 23:15:37 +01:00
Sergiu Ivanov
e8e3a71d87 networks: Remove nn. 2020-03-25 23:05:28 +01:00
Sergiu Ivanov
dfb882d891 networks: Remove st and stb. 2020-03-25 00:31:23 +01:00
Sergiu Ivanov
086f4c4949 utils: Add unorg. 2020-03-25 00:19:28 +01:00
Sergiu Ivanov
a8a981098f utils: unorg -> unorgv 2020-03-25 00:16:29 +01:00
Sergiu Ivanov
62ae1e3af1 utils: Convert dotit and unorg to functions. 2020-03-25 00:03:26 +01:00
Sergiu Ivanov
c4af42a2f6 example: Update a call to build-boolean-signed-interaction-graph. 2020-03-24 23:59:11 +01:00
Sergiu Ivanov
8bc2a582a6 utils: Remove sgfy. 2020-03-24 23:47:20 +01:00
Sergiu Ivanov
87dc89ee6f rs: Actually remove the macros. 2020-03-24 23:38:07 +01:00
Sergiu Ivanov
14688a9bae rs: Remove macros, update example. 2020-03-24 23:22:20 +01:00
Sergiu Ivanov
4c6f3af2a9 rs: Add read-org-rs and define unorg-rs as a synonym for it. 2020-03-24 21:31:01 +01:00
Sergiu Ivanov
7f214266d0 rs: Don't use unorg macros internally. 2020-03-24 21:20:08 +01:00
Sergiu Ivanov
502fcb18bb utils: Simplify read-org-variable-mapping. 2020-03-24 21:17:05 +01:00
Sergiu Ivanov
ac8c999272 networks: Add table->network. 2020-03-24 00:18:39 +01:00
Sergiu Ivanov
f1514fffe3 utils: Add lists-transpose. 2020-03-23 22:47:52 +01:00
Sergiu Ivanov
df042493d9 utils: Add multi-split-at. 2020-03-23 22:32:39 +01:00
Sergiu Ivanov
9961dc7c8b networks: Add "and networks" to "Constructing functions". 2020-03-23 22:31:58 +01:00
Sergiu Ivanov
ac2d03f953 Add some tests for building signed interaction graphs from networks.
Previously I only had functions for building interaction graphs from
forms.  These do not play well with networks randomly generated from
truth tables.
2020-03-22 21:08:45 +01:00
Sergiu Ivanov
b79bae9d67 example: Update the randomly generated network. 2020-03-22 21:03:20 +01:00
Sergiu Ivanov
27fa176d0f utils: Make read-org-variable-mapping return an immutable hash. 2020-03-22 21:01:51 +01:00
Sergiu Ivanov
b0eb81b051 networks: Add build-signed-interaction-graph and build-boolean-signed-interaction-graph.
No tests yet.
2020-03-22 21:00:12 +01:00
Sergiu Ivanov
a77d42af85 networks: Functions for interaction graph explicitly say they use forms. 2020-03-22 20:45:11 +01:00
Sergiu Ivanov
65445e6ba8 networks: Make get-interaction-sign take a network, not a form. 2020-03-22 20:43:14 +01:00
Sergiu Ivanov
b38bebb67b example: Add some examples for random functions and networks. 2020-03-22 20:38:32 +01:00
Sergiu Ivanov
5330336b6d networks: Use '+ and '- as labels in the signed interaction graph. 2020-03-22 20:26:04 +01:00
Sergiu Ivanov
e7b35a451c Add the example on tabulating Boolean networks. 2020-03-22 20:22:23 +01:00
Sergiu Ivanov
32d117a155 example: Network functions -> Tabulating functions and networks. 2020-03-22 19:36:07 +01:00
Sergiu Ivanov
401f895dd2 networks: Make build-all-states order the variables. 2020-03-22 19:34:08 +01:00
Sergiu Ivanov
cd11bcc330 networks: Export and test the functions for generation of random networks. 2020-03-22 19:28:44 +01:00
Sergiu Ivanov
c823001492 networks: Add tabulate-network and tabulate-boolean-network. 2020-03-22 19:22:54 +01:00
Sergiu Ivanov
5fd16e4465 networks: Add random-network, random-boolean-network, random-boolean-networks/vars. 2020-03-22 18:40:50 +01:00
Sergiu Ivanov
75b19c7977 networks: Make sectioning more fine-grained. 2020-03-22 14:40:23 +01:00
Sergiu Ivanov
aa7ba6de8a network-test: Fix some indentation. 2020-03-22 14:36:02 +01:00
Sergiu Ivanov
a40106e47c networks: Add random-function/state and random-boolean-function/state. 2020-03-22 14:35:26 +01:00
Sergiu Ivanov
5358f9bf57 networks: Add tabulate-state and tabulate-state/boolean. 2020-03-22 14:34:40 +01:00
Sergiu Ivanov
f0ac9223e4 utils: Don't forget hash->list/ordered (the tests were broken). 2020-03-21 19:23:30 +01:00
Sergiu Ivanov
9113a788a9 networks: Make network? more precise.
Require that the hash table maps variables to procedures, instead of
requiring nothing of the values of the hash table.
2020-03-21 19:19:23 +01:00
Sergiu Ivanov
9682049df5 networks: Remove network/c.
I've never used it.
2020-03-21 19:18:45 +01:00