2020-10-30 21:01:43 +01:00
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name: Format validation
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on:
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push:
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2020-10-31 22:48:12 +01:00
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branches:
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2020-10-30 21:01:43 +01:00
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- '*'
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2020-10-31 22:48:12 +01:00
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- '!rc/*'
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paths:
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- 'test/writer.jats_articleauthoring'
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- 'test/writer.jats_publishing'
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- 'test/writer.jats_archiving'
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2020-11-18 17:31:41 +01:00
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- 'test/tables.jats_archiving'
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2020-11-17 17:18:15 +01:00
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- 'test/tables/nordics.jats_archiving'
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- 'test/tables/planets.jats_archiving'
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- 'test/tables/students.jats_archiving'
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2020-10-30 21:01:43 +01:00
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pull_request:
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2020-10-31 22:48:12 +01:00
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branches:
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2020-10-30 21:01:43 +01:00
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- '*'
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2020-10-31 22:48:12 +01:00
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- '!rc/*'
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paths:
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- 'test/writer.jats_articleauthoring'
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- 'test/writer.jats_publishing'
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- 'test/writer.jats_archiving'
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2020-11-18 17:31:41 +01:00
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- 'test/tables.jats_archiving'
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2020-11-17 17:18:15 +01:00
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- 'test/tables/nordics.jats_archiving'
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- 'test/tables/planets.jats_archiving'
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- 'test/tables/students.jats_archiving'
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2020-10-30 21:01:43 +01:00
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2022-03-24 17:32:57 +01:00
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permissions:
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contents: read
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2020-10-30 21:01:43 +01:00
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jobs:
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jats:
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name: JATS
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runs-on: ubuntu-latest
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env:
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VALIDATOR_URL: "https://jats-validator.hubmed.org/dtd/"
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strategy:
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fail-fast: false
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matrix:
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tagset:
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- articleauthoring
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- publishing
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- archiving
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steps:
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- name: Checkout
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2022-03-25 01:51:31 +01:00
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uses: actions/checkout@v3
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2020-10-30 21:01:43 +01:00
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2020-11-18 17:31:41 +01:00
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- name: Validate writer output
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2020-10-30 21:01:43 +01:00
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run: |
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2020-11-18 17:31:41 +01:00
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filename=test/writer.jats_${{ matrix.tagset }}
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2020-10-31 22:48:12 +01:00
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printf "Validating file %s\n" "$filename"
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2020-10-30 21:01:43 +01:00
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json="$(curl --form "xml=@${filename}" --silent "$VALIDATOR_URL")"
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2020-11-18 17:31:41 +01:00
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err_count="$(printf '%s' "$json" | jq '.errors | length')"
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2020-10-30 21:01:43 +01:00
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if [ "$err_count" -eq 0 ]; then
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2020-10-31 22:48:12 +01:00
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printf "File was validated successfully.\n"
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2020-10-30 21:01:43 +01:00
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exit 0
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else
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printf "Validator report:\n%s" "$json"
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exit 1
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fi
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2020-11-18 17:31:41 +01:00
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- name: Validate tables
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# Archiving has the simplest template, so we only check with that.
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if: matrix.tagset == 'archiving'
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run: |
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tmpl="$(cat <<EOF
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<?xml version="1.0" encoding="utf-8" ?>
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<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD v1.2 20190208//EN"
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"JATS-archivearticle1.dtd">
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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="1.2" article-type="other">
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<front><article-meta></article-meta></front>
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<body>%s</body></article>
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EOF
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)"
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jats_file="$(mktemp jats-tables.XXXXX)"
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2020-11-17 17:18:15 +01:00
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exit_code=0
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for f in tables tables/nordics tables/planets tables/students; do
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filename=test/$f.jats_archiving
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printf "Validating %s...\n" "$filename"
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printf "$tmpl" "$(cat $filename)" > "$jats_file"
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json="$(curl --form "xml=@${jats_file}" --silent "$VALIDATOR_URL")"
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err_count="$(printf "%s" "$json" | jq '.errors | length')"
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if [ "$err_count" -eq 0 ]; then
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printf "Table output is valid when used as body content.\n"
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else
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printf "Validator report:\n%s" "$json"
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exit_code=1
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fi
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done
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exit "$exit_code"
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