#+TITLE: Introduction to Cytoscape

#+LANGUAGE: en

#+ATTR_HTML: :alt in French  :class lang-lifted
[[file:../fr/cytoscape-intro.org][file:../content/imgs/fr.png]]

#+ATTR_HTML: :alt return home  :class home
[[file:../index.org][file:../content/imgs/home.png]]

This is a short (3 to 4 hours) lab session in which students learn
some basic usage patterns of [[http://cytoscape.org/][Cytoscape]], a state of the art tool for
analysis of biological networks. The lab assignment proposes following
the [[http://manual.cytoscape.org/en/stable/Basic_Expression_Analysis_Tutorial.html#basic-expression-analysis-tutorial][Cytoscape tutorial]], one of the [[http://manual.cytoscape.org/en/stable/Styles.html#styles-tutorials][tutorials on styles]], and then
requires the students to use Cytoscape to analyse a signalling pathway
related to breast cancer and to formulate non-trivial conclusions.

The slides defining the objectives of this lab session can be found
[[file:../content/courses/cytoscape-intro/cytoscape-beam.pdf][here]].

#+ATTR_HTML:  :alt image of Creative Commons Attribution Alone licence  :class ccby
[[https://en.wikipedia.org/wiki/Creative_Commons_license][file:../content/imgs/ccby.png]]

The materials of this course are distributed under the [[https://en.wikipedia.org/wiki/Creative_Commons_license][Creative
Commons Attribution Alone licence]].


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