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#+TITLE : Sergiu Ivanov
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#+LANGUAGE : en
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Déborah Bernard
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[[file:content/me/sivanov.jpg ]]
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#+ATTR_HTML : :alt in French :class lang
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[[file:fr/index.org ][file:content/imgs/fr.png ]]
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I am Associate Professor ([[https://en.wikipedia.org/wiki/Academic_ranks_in_France#Permanent_positions ][maître de conférences ]]) at [[http://www.univ-evry.fr/fr/index.html][Université d'Évry,
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Paris-Saclay University]]. I do my research at [[https://www.ibisc.univ-evry.fr/en ][IBISC ]], and I am on
sabbatical until August 2024.
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Write to me at *=sergiu= $_{dot}$ =ivanov= (at) =univ-evry.fr=* .
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Here is my moderately long [[file:content/me/sivanov-cv-hdr.pdf ][academic CV ]].
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-----
Jump to:
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| | [[My News][My News]] | [[Past positions]] | [[Roles][Roles]] |
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| | [[Research]] | [[Teaching]] | [[Full contact information]] |
| | [[Publications]] | [[Programming]] | |
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* My News
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| [2024-05-09] | Our paper [[https://trebuchet.public.springernature.app/get_content/37f1140f-64ef-420a-a866-22f8dfe9dbf1?utm_source=rct_congratemailt&utm_medium=email&utm_campaign=nonoa_20240509&utm_content=10.1007/s41965-024-00152-1][Queens of the Hill]] has been published. |
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| [2024-04-23] | Our paper [[https://trebuchet.public.springernature.app/get_content/38ceb961-f09c-4017-81a8-31325757c9d3?utm_source=rct_congratemailt&utm_medium=email&utm_campaign=nonoa_20240423&utm_content=10.1007/s41965-024-00144-1][P Systems with Reactive Membranes]] has been published. |
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| [2024-04-11] | Our paper [[https://trebuchet.public.springernature.app/get_content/eecd91cf-57ad-481d-bc79-7e6741a684a0?utm_source=rct_congratemailt&utm_medium=email&utm_campaign=nonoa_20240411&utm_content=10.1007/s11047-024-09986-1][On the spectrum between reaction systems and string rewriting]] has been published. |
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/Current reading:/ Tural Aksel, Erik J. Navarro, Nicholas Fong, and
Shawn M. Douglas. [[https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10983894/ ][Design principles for accurate folding of DNA
origami]]
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* Research
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I am currently /actively working/ on:
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[[https://en.wikipedia.org/wiki/Mathematical_and_theoretical_biology ][theoretical biology ]] [[https://en.wikipedia.org/wiki/DNA_nanotechnology ][DNA nanotechnology ]] [[https://en.wikipedia.org/wiki/Natural_computing ][natural computing ]]
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[[https://en.wikipedia.org/wiki/Theoretical_computer_science ][theoretical computer science ]]
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I am /also working/ on:
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#+ATTR_HTML: :class keylinks
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[[https://en.wikipedia.org/wiki/Formal_language ][formal languages ]] [[https://en.wikipedia.org/wiki/Rewriting#String_rewriting_systems ][rewriting ]] [[https://en.wikipedia.org/wiki/Network_biology ][network biology ]] [[https://en.wikipedia.org/wiki/Complexity ][complexity ]]
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[[https://en.wikipedia.org/wiki/Modelling_biological_systems ][biomodelling ]]
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I have worked with these (and similar) /formal models/ :
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[[https://en.wikipedia.org/wiki/P_system ][membrane (P) systems ]] [[https://en.wikipedia.org/wiki/Boolean_network ][Boolean networks ]] [[https://home.cs.colorado.edu/~lizb/phd/grzegorz.pdf ][reaction systems ]]
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[[https://en.wikipedia.org/wiki/Register_machine#Lambek_(1961)_atomizes_Melzak's_model_into_the_Minsky_(1961)_model:_INC_and_DEC-with-test ][register machines ]] [[https://en.wikipedia.org/wiki/Petri_net ][Petri nets ]]
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I am interested in formal and abstract structures, as well as their
various connections to biological reality.
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* Publications
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I maintain a [[file:en/publications.org ][complete list ]] of my publications.
A fairly comprehensive list of my publications is also available on
[[https://dblp.uni-trier.de/pers/hd/i/Ivanov_0001:Sergiu ][my DBLP page ]]. A list of my publications with some freely
downloadable full-texts is also available on [[https://hal.archives-ouvertes.fr/search/index/?q=sergiu+ivanov ][HAL ]] ([[https://en.wikipedia.org/wiki/Hyper_Articles_en_Ligne][a French
scientific archive]]).
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My ORCID number is [[https://orcid.org/0000-0002-1537-6508 ][0000-0002-1537-6508 ]] and I have a [[https://www.researchgate.net/profile/Sergiu_Ivanov4][ResearchGate
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profile]].
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Also, check out this initiative https://nofreeviewnoreview.org/ .
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** Seminars and talks
Here are some slides from some of my seminars:
- Queens of the Hill ([[file:content/seminars/cmc2023-queens-beam.pdf ][slides ]])
- P Systems with Reactive Membranes ([[file:content/seminars/cmc2023-fat-beam-Rudi.pdf ][slides ]])
- The Many Shapes of Polymorphism ([[file:content/seminars/many-shapes.pdf ][slides ]])
#+ATTR_HTML: :alt image of Creative Commons Attribution Alone licence :class ccby
[[https://en.wikipedia.org/wiki/Creative_Commons_license ][file:content/imgs/ccby.png ]]
These materials are distributed under the [[https://en.wikipedia.org/wiki/Creative_Commons_license][Creative Commons
Attribution Alone licence]].
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* Teaching
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Here is a list of courses I prepared, in chronological order:
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- [[https://ecampus.paris-saclay.fr/course/view.php?id=79600 ][computational DNA nanotechnology ]], with [[https://www.ibisc.univ-evry.fr/~dregnault/Page_dacceuil.html ][Damien Regnault ]], password:
=m2geniomhe-dna=
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- [[https://ecampus.paris-saclay.fr/course/view.php?id=21726 ][introduction to membrane computing ]], with [[http://www.cs.us.es/~dorellana/ ][David Orellana-Martín ]] and
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[[https://www.researchgate.net/profile/Ricardo_Graciani_Diaz ][Ricardo Graciani ]], E-mail me for the password
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- [[https://ecampus.paris-saclay.fr/course/view.php?id=75618 ][introduction to LaTeX and Git ]] in French, password: =ppei-l3=
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- [[https://ecampus.paris-saclay.fr/course/view.php?id=75796 ][operating systems ]] in French, password: =sye-l3=
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- [[file:en/alife-intro.org ][a very quick introduction to artificial life ]]
- [[file:en/pn-biomodelling.org ][Petri nets for biomodelling ]]
- [[file:en/cytoscape-intro.org ][introduction to Cytoscape ]]
- [[file:en/togit.org ][To Git or Not to Git ]]
- [[file:en/h4life.org ][Haskell for Life ]]
- [[file:en/os-upec.org ][operating systems and networks ]]
- [[file:en/parsing-upec.org ][basic parsing ]]
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#+ATTR_HTML: :alt image of Creative Commons Attribution Alone licence :class ccby
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[[https://en.wikipedia.org/wiki/Creative_Commons_license ][file:content/imgs/ccby.png ]]
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All course materials are distributed under the [[https://en.wikipedia.org/wiki/Creative_Commons_license][Creative Commons
Attribution Alone licence]], unless specified
otherwise.
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* Programming
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I am currently developing [[https://git.marvid.fr/scolobb/dds ][dds ]], a home-made toolkit for discrete
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dynamical systems in [[https://racket-lang.org/ ][Racket ]], a modern Lisp dialect. Here is
[[https://github.com/scolobb ][my GitHub profile ]].
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* Roles
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I manage the work group on [[https://en.wikipedia.org/wiki/Personalized_medicine ][personalized medicine ]] /Axe transverse
Médecine personnalisée/ at IBISC together with [[https:/ /www.ibisc.univ-evry.fr/ ~zehraoui/Farida_Zehraoui.html][Farida Zehraoui]].
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I am a [[https://mcb.peercommunityin.org/public/user_public_page?userId=439 ][recommender ]] for [[https://mcb.peercommunityin.org/ ][Peer Community In Mathematical and
Computational Biology]].
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I am member of the editorial board of the [[http://www.math.md/publications/csjm/ ][Computer Science Journal
of Moldova]].
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I am elected member of the [[https://www.univ-evry.fr/recherche/commission-de-la-recherche.html ][/Research Commission/ ]] and of the
/Academic Council/ of Université d'Évry.
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I am an elected member of the /Council of the [[https:/ /www.universite-paris-saclay.fr/en/graduate-schools][Graduate School
"Computer Science"]]/ of the Paris-Saclay University.
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I am member of the /Council for Digital Ressources/ (Conseil des
Utilisateurs du Numérique) of the Université d'Évry.
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* Past positions
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- 2016– 2017: /Postdoc/ with [[https://sites.google.com/site/nicolasglade/ ][Nicolas Glade ]] on biomechanical modelling
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of the [[https://en.wikipedia.org/wiki/Cytoskeleton ][cytoskeleton ]], with additional focus on unconventional
computing, theoretical biology, and epistemology.
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- 2015– 2016: [[https://en.wikipedia.org/wiki/Attaché_Temporaire_d'Enseignement_et_de_Recherche ][/ATER/ ]] at [[http://www.en.u-pec.fr/ ][Université Paris Est Créteil ]].
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- 2012– 2015: /PhD student/ at [[http://www.en.u-pec.fr/ ][Université Paris Est Créteil ]],
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supervised by [[http://lacl.univ-paris12.fr/verlan/ ][Sergey Verlan ]]. I defended [[file:content/phd/ivanov-phd.pdf ][my thesis ]] entitled
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/"On the Power and Universality of Biologically-inspired
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Models of Computation"/ in June 2015 ([[file:content/phd/ivanov-phd-beam.pdf ][presentation slides ]]).
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* Full contact information
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*Sergiu Ivanov* \\
Room: 319 \\
IBISC - [[https://www.openstreetmap.org/search?query=%C3%A9vry%20ibgbi ][IBGBI ]] – 3rd floor \\
23, boulevard de France \\
91034 Évry, France
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