399 lines
14 KiB
BibTeX
399 lines
14 KiB
BibTeX
@book{Glade22,
|
||
author = {Nicolas Glade},
|
||
title = {Le Vivant Rare, Faible et Amorphe - {\'{E}}volution depuis les
|
||
Origines jusqu'{\`{a}} la Vie telle qu'elle nous Appara{\^{\i}}t.
|
||
(Rare, Weak and Amorphous Life - Evolution of Life from the Origins
|
||
until Life as it Appears Nowadays)},
|
||
year = {2022},
|
||
url = {https://tel.archives-ouvertes.fr/tel-04075075},
|
||
timestamp = {Sun, 23 Apr 2023 00:55:01 +0200},
|
||
biburl = {https://dblp.org/rec/books/hal/Glade22.bib},
|
||
bibsource = {dblp computer science bibliography, https://dblp.org},
|
||
publisher = {Habilitation thesis (HDR)}
|
||
}
|
||
|
||
@book{Howe1858,
|
||
author = {Henry Howe},
|
||
title = {Memoirs of the most eminent {A}merican mechanics},
|
||
year = {1858},
|
||
publisher = {New York: Derby \& Jackson},
|
||
note = {Page 450}
|
||
}
|
||
|
||
@book{Lilienthal1911,
|
||
author = {Otto Lilienthal},
|
||
title = {Birdflight as the Basis of Aviation},
|
||
year = {1911},
|
||
publisher = {Berlin},
|
||
note = {Table of contents: \url{http://www.lilienthal-museum.de/olma/e6.htm}}
|
||
}
|
||
|
||
@article{RamamoorthyT22,
|
||
author = {Raghu Ramamoorthy and
|
||
Menakadevi Thangavelu},
|
||
title = {An enhanced hybrid ant colony optimization routing protocol for vehicular
|
||
ad-hoc networks},
|
||
journal = {Journal of Ambient Intelligence and Humanized Computing},
|
||
volume = {13},
|
||
number = {8},
|
||
pages = {3837--3868},
|
||
year = {2022},
|
||
url = {https://doi.org/10.1007/s12652-021-03176-y},
|
||
doi = {10.1007/s12652-021-03176-y},
|
||
timestamp = {Sun, 02 Oct 2022 15:39:55 +0200},
|
||
biburl = {https://dblp.org/rec/journals/jaihc/RamamoorthyT22.bib},
|
||
bibsource = {dblp computer science bibliography, https://dblp.org}
|
||
}
|
||
|
||
@article{Hopfield1982,
|
||
author = {John J. Hopfield},
|
||
title = {Neural networks and physical systems with emergent collective computational abilities},
|
||
journal = {Proceedings of the National Academy of Sciences of the United States of America},
|
||
volume = {79},
|
||
pages = {2554--2558},
|
||
year = {1982}
|
||
}
|
||
|
||
@article{Woese2004,
|
||
author = {Carl R. Woese},
|
||
title = {A new biology for a new century},
|
||
journal = {Microbiology and molecular biology reviews},
|
||
volume = {68(2)},
|
||
pages = {173--186},
|
||
year = {2004}
|
||
}
|
||
|
||
@article{Nicholson2019,
|
||
title = {Is the cell really a machine?},
|
||
journal = {Journal of Theoretical Biology},
|
||
volume = {477},
|
||
pages = {108--126},
|
||
year = {2019},
|
||
issn = {0022-5193},
|
||
doi = {https://doi.org/10.1016/j.jtbi.2019.06.002},
|
||
url = {https://www.sciencedirect.com/science/article/pii/S0022519319302292},
|
||
author = {Daniel J. Nicholson}
|
||
}
|
||
|
||
@article{CornishBowdenCLSA2007,
|
||
author = {Athel Cornish-Bowden and Mar\'{i}a Luz C\'{a}rdenas and Juan-Carlos Letelier and Jorge Soto-Andrade},
|
||
title = {Beyond reductionism: metabolic circularity as a guiding vision for a real biology of systems},
|
||
journal = {Proteomics},
|
||
volume = {7(6)},
|
||
pages = {839--845},
|
||
year = {2007}
|
||
}
|
||
|
||
@inproceedings{RonaldSC99,
|
||
author = {Edmund M. A. Ronald and
|
||
Moshe Sipper and
|
||
Mathieu S. Capcarr{\`{e}}re},
|
||
editor = {Dario Floreano and
|
||
Jean{-}Daniel Nicoud and
|
||
Francesco Mondada},
|
||
title = {Testing for Emergence in Artificial Life},
|
||
booktitle = {Advances in Artificial Life, 5th European Conference, ECAL'99, Lausanne,
|
||
Switzerland, September 13-17, 1999, Proceedings},
|
||
series = {Lecture Notes in Computer Science},
|
||
volume = {1674},
|
||
pages = {13--20},
|
||
publisher = {Springer},
|
||
year = {1999},
|
||
url = {https://doi.org/10.1007/3-540-48304-7\_5},
|
||
doi = {10.1007/3-540-48304-7\_5},
|
||
timestamp = {Wed, 07 Dec 2022 23:10:50 +0100},
|
||
biburl = {https://dblp.org/rec/conf/ecal/RonaldSC99.bib},
|
||
bibsource = {dblp computer science bibliography, https://dblp.org}
|
||
}
|
||
|
||
@misc{wikiLaplace,
|
||
author = "{Wikipedia contributors}",
|
||
title = "Laplace's demon --- {Wikipedia}{,} The Free Encyclopedia",
|
||
year = "2023",
|
||
howpublished = "\url{https://en.wikipedia.org/w/index.php?title=Laplace's_demon&oldid=1163265214}",
|
||
note = "[Online; accessed 26-July-2023]"
|
||
}
|
||
|
||
@misc{Carroll,
|
||
author = {Sean Carroll},
|
||
title = {{S}ean {C}arroll's {M}indscape {P}odcast},
|
||
year = {Retrieved on 2023-07-25},
|
||
howpublished = {\url{https://www.preposterousuniverse.com/podcast/}}
|
||
}
|
||
|
||
@misc{wikiEntropy,
|
||
author = "{Wikipedia contributors}",
|
||
title = "Entropy (statistical thermodynamics) --- {Wikipedia}{,} The Free Encyclopedia",
|
||
year = "2023",
|
||
howpublished = "\url{https://en.wikipedia.org/w/index.php?title=Entropy_(statistical_thermodynamics)&oldid=1143513230}",
|
||
note = "[Online; accessed 26-July-2023]"
|
||
}
|
||
|
||
@misc{SusskindCourse,
|
||
author = {Leonard Susskind},
|
||
title = {Modern Physics: Statistical Mechanics},
|
||
misc = {Standford Lecture Collection},
|
||
howpublished = {\url{https://www.youtube.com/playlist?list=PLB72416C707D85AB0}}
|
||
}
|
||
|
||
@misc{wikiMotors,
|
||
author = "{Wikipedia contributors}",
|
||
title = "Molecular motor --- {Wikipedia}{,} The Free Encyclopedia",
|
||
year = "2023",
|
||
howpublished = "\url{https://en.wikipedia.org/w/index.php?title=Molecular_motor&oldid=1130929229}",
|
||
note = "[Online; accessed 26-July-2023]"
|
||
}
|
||
|
||
@misc{lifeOfTheCell,
|
||
author = {John Liebler},
|
||
title = {The Inner Life of the Cell},
|
||
note = {Guidance of Robert Lue and Alain Viel},
|
||
year = {2006},
|
||
howpublished = {\url{https://www.artofthecell.com/in-the-beginning-there-was-the-inner-life-of-the-cell/}}
|
||
}
|
||
|
||
@article{Mayer2009,
|
||
author = {Bruce J. Mayer and Michael L. Blinov and Leslie M. Loew},
|
||
title = {Molecular machines or pleiomorphic ensembles: signaling complexes revisited},
|
||
journal = {Journal of biology},
|
||
volume = {8(9)},
|
||
page = {81},
|
||
year = {2009}
|
||
}
|
||
|
||
@article{Kurakin2006,
|
||
title = {Self-organization versus Watchmaker: Molecular motors and protein translocation},
|
||
journal = {Biosystems},
|
||
volume = {84},
|
||
number = {1},
|
||
pages = {15-23},
|
||
year = {2006},
|
||
issn = {0303-2647},
|
||
doi = {https://doi.org/10.1016/j.biosystems.2005.09.007},
|
||
url = {https://www.sciencedirect.com/science/article/pii/S030326470500153X},
|
||
author = {Alexei Kurakin},
|
||
keywords = {Self-organization, Stochasticity, Determinism, Molecular motors, Brownian ratchet, Protein translocation},
|
||
}
|
||
|
||
@misc{berkleyBio,
|
||
author = {Berkley Bioengineering},
|
||
title = {What is Bioengineering?},
|
||
year = {Retrieved on 2023-07-29},
|
||
howpublished = {\url{https://bioeng.berkeley.edu/about-us/what-is-bioengineering}}
|
||
}
|
||
|
||
@article{PardoID21,
|
||
author = {J{\'{e}}r{\'{e}}mie Pardo and
|
||
Sergiu Ivanov and
|
||
Franck Delaplace},
|
||
title = {Sequential reprogramming of biological network fate},
|
||
journal = {Theor. Comput. Sci.},
|
||
volume = {872},
|
||
pages = {97--116},
|
||
year = {2021},
|
||
url = {https://doi.org/10.1016/j.tcs.2021.03.013},
|
||
doi = {10.1016/j.tcs.2021.03.013},
|
||
timestamp = {Tue, 01 Jun 2021 08:35:28 +0200},
|
||
biburl = {https://dblp.org/rec/journals/tcs/PardoID21.bib},
|
||
bibsource = {dblp computer science bibliography, https://dblp.org}
|
||
}
|
||
|
||
@inproceedings{MandonSH0P19,
|
||
author = {Hugues Mandon and
|
||
Cui Su and
|
||
Stefan Haar and
|
||
Jun Pang and
|
||
Lo{\"{\i}}c Paulev{\'{e}}},
|
||
editor = {Luca Bortolussi and
|
||
Guido Sanguinetti},
|
||
title = {Sequential Reprogramming of {B}oolean Networks Made Practical},
|
||
booktitle = {Computational Methods in Systems Biology - 17th International Conference,
|
||
{CMSB} 2019, Trieste, Italy, September 18-20, 2019, Proceedings},
|
||
series = {Lecture Notes in Computer Science},
|
||
volume = {11773},
|
||
pages = {3--19},
|
||
publisher = {Springer},
|
||
year = {2019},
|
||
url = {https://doi.org/10.1007/978-3-030-31304-3\_1},
|
||
doi = {10.1007/978-3-030-31304-3\_1},
|
||
timestamp = {Tue, 17 Sep 2019 12:55:34 +0200},
|
||
biburl = {https://dblp.org/rec/conf/cmsb/MandonSH0P19.bib},
|
||
bibsource = {dblp computer science bibliography, https://dblp.org}
|
||
}
|
||
|
||
@article{BianeD19,
|
||
author = {C{\'{e}}lia Biane and
|
||
Franck Delaplace},
|
||
title = {Causal Reasoning on {B}oolean Control Networks Based on Abduction: Theory
|
||
and Application to Cancer Drug Discovery},
|
||
journal = {{IEEE} {ACM} Transactions on Computational Biology and Bioinformatics},
|
||
volume = {16},
|
||
number = {5},
|
||
pages = {1574--1585},
|
||
year = {2019},
|
||
url = {https://doi.org/10.1109/TCBB.2018.2889102},
|
||
doi = {10.1109/TCBB.2018.2889102},
|
||
timestamp = {Sun, 06 Sep 2020 16:55:36 +0200},
|
||
biburl = {https://dblp.org/rec/journals/tcbb/BianeD19.bib},
|
||
bibsource = {dblp computer science bibliography, https://dblp.org}
|
||
}
|
||
|
||
@Article{Zanudo2015,
|
||
Title = {Cell fate reprogramming by control of intracellular network dynamics},
|
||
Author = {Za{\~n}udo, Jorge G.T. and Albert, R{\'e}ka},
|
||
Journal = {PLoS Computational Biology},
|
||
Year = {2015},
|
||
Number = {4},
|
||
Pages = {e1004193},
|
||
Volume = {11},
|
||
|
||
Owner = {FD LAPTOP},
|
||
Publisher = {Public Library of Science},
|
||
Timestamp = {2017.01.24}
|
||
}
|
||
|
||
@Article{Vogel2008,
|
||
author = {Vogel, Gretchen},
|
||
title = {Reprogramming cells},
|
||
journal = {Science},
|
||
year = {2008},
|
||
volume = {322},
|
||
number = {5909},
|
||
pages = {1766--1767},
|
||
publisher = {American Association for the Advancement of Science},
|
||
}
|
||
|
||
@article{AlhazovFDFGI2023,
|
||
title = {A {P} systems variant for reasoning about sequential controllability of Boolean networks},
|
||
journal = {Theoretical Computer Science},
|
||
volume = {970},
|
||
pages = {114056},
|
||
year = {2023},
|
||
issn = {0304-3975},
|
||
doi = {https://doi.org/10.1016/j.tcs.2023.114056},
|
||
url = {https://www.sciencedirect.com/science/article/pii/S0304397523003699},
|
||
author = {Artiom Alhazov and Vincent Ferrari-Dominguez and Rudolf Freund and Nicolas Glade and Sergiu Ivanov},
|
||
keywords = {Boolean P systems, Boolean networks, Reachability, Complexity},
|
||
}
|
||
|
||
@book{handMC,
|
||
editor = {{\relax Gh}eorghe P\u{a}un and Grzegorz Rozenberg
|
||
and Arto Salomaa},
|
||
title = {The Oxford Handbook of Membrane Computing},
|
||
publisher = {Oxford University Press},
|
||
year = {2010}
|
||
}
|
||
|
||
@book{DassowP89,
|
||
author = {J{\"{u}}rgen Dassow and Gheorghe Paun},
|
||
title = {Regulated Rewriting in Formal Language Theory},
|
||
publisher = {Springer},
|
||
year = {1989},
|
||
url = {https://www.springer.com/de/book/9783642749346},
|
||
isbn = {978-3-642-74934-6},
|
||
timestamp = {Tue, 21 May 2019 16:47:56 +0200},
|
||
biburl = {https://dblp.org/rec/books/sp/DassowP89.bib},
|
||
bibsource = {dblp computer science bibliography,
|
||
https://dblp.org}
|
||
}
|
||
|
||
@article{BjornbergKGH2017,
|
||
title = {Climate and environmental science denial: A review
|
||
of the scientific literature published in 1990–2015},
|
||
journal = {Journal of Cleaner Production},
|
||
volume = 167,
|
||
pages = {229--241},
|
||
year = 2017,
|
||
issn = {0959-6526},
|
||
doi = {https://doi.org/10.1016/j.jclepro.2017.08.066},
|
||
url =
|
||
{https://www.sciencedirect.com/science/article/pii/S0959652617317821},
|
||
author = {Karin Edvardsson Björnberg and Mikael Karlsson and
|
||
Michael Gilek and Sven Ove Hansson}
|
||
}
|
||
|
||
@article{ONeillB2010,
|
||
author = {Saffron J. O’Neill and Max Boykoffb},
|
||
title = {Climate denier, skeptic, or contrarian?},
|
||
journal = {Proceedings of the National Academy of Sciences of
|
||
the United States of America},
|
||
volume = {107(39):E151},
|
||
doi = {doi:10.1073/pnas.1010507107},
|
||
year = {2010}
|
||
}
|
||
|
||
@misc{wikiClimate,
|
||
author = "{Wikipedia contributors}",
|
||
title = "Climate change --- {Wikipedia}{,} The Free
|
||
Encyclopedia",
|
||
year = "2024",
|
||
howpublished =
|
||
"\url{https://en.wikipedia.org/w/index.php?title=Climate_change&oldid=1210314463}",
|
||
note = "[Online; accessed 26-February-2024]"
|
||
}
|
||
|
||
@book{DryzekNS2011,
|
||
author = {Dryzek, John S. and Norgaard, Richard B. and
|
||
Schlosberg, David},
|
||
title = "{The Oxford Handbook of Climate Change and Society}",
|
||
publisher = {Oxford University Press},
|
||
year = {2011},
|
||
month = {08},
|
||
isbn = {9780199566600},
|
||
doi = {10.1093/oxfordhb/9780199566600.001.0001},
|
||
url =
|
||
{https://doi.org/10.1093/oxfordhb/9780199566600.001.0001},
|
||
}
|
||
|
||
@article{Zeeman1976,
|
||
author = {Erik C. Zeeman},
|
||
title = {Catastrophe theory},
|
||
journal = {Scientific American},
|
||
volume = {234(4)},
|
||
pages = {65--83},
|
||
year = {1976}
|
||
}
|
||
|
||
@misc{wikiDS,
|
||
author = "{Wikipedia contributors}",
|
||
title = "Dynamical system --- {Wikipedia}{,} The Free
|
||
Encyclopedia",
|
||
year = "2024",
|
||
howpublished =
|
||
"\url{https://en.wikipedia.org/w/index.php?title=Dynamical_system&oldid=1208607435}",
|
||
note = "[Online; accessed 27-February-2024]"
|
||
}
|
||
|
||
@article{Thom1974,
|
||
title = {Stabilité structurelle et morphogenèse},
|
||
journal = {Poetics},
|
||
volume = {3},
|
||
number = {2},
|
||
pages = {7-19},
|
||
year = {1974},
|
||
issn = {0304-422X},
|
||
doi = {https://doi.org/10.1016/0304-422X(74)90010-2},
|
||
url =
|
||
{https://www.sciencedirect.com/science/article/pii/0304422X74900102},
|
||
author = {René Thom}
|
||
}
|
||
|
||
@book{Brown2018,
|
||
title = {A Modern Introduction to Dynamical Systems},
|
||
author = {Richard J. Brown},
|
||
isbn = {978-0198743286},
|
||
publisher = {Oxford University Press},
|
||
year = {2018}
|
||
}
|
||
|
||
@phdthesis{Riva22,
|
||
author = {Sara Riva},
|
||
title = {Factorisation of discrete dynamical systems. (Factorisation de syst{\`{e}}mes
|
||
dynamiques discrets)},
|
||
school = {C{\^{o}}te d'Azur University, Nice, France},
|
||
year = {2022},
|
||
url = {https://tel.archives-ouvertes.fr/tel-03937258},
|
||
timestamp = {Wed, 25 Jan 2023 22:01:27 +0100},
|
||
biburl = {https://dblp.org/rec/phd/hal/Riva22.bib},
|
||
bibsource = {dblp computer science bibliography, https://dblp.org}
|
||
}
|