503 lines
19 KiB
TeX
503 lines
19 KiB
TeX
\newcommand{\cvsecrule}{\vspace{-3mm}{\color{Prune}\hrule}\medskip}
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\newcommand{\timeskip}{3mm}
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\chapter[CV]{Sergiu Ivanov \enspace — \enspace CV}
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\hspace{\parindent}%
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\textbf{Maître de conférences --- Associate Professor}
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IBISC Laboratory
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Department of Computer Science
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Université d'Évry Paris-Saclay
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IBGBI, 23 boulevard de France
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91034 Évry-Courcouronnes, France
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\url{sergiu.ivanov@universite-paris-saclay.fr}
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\url{https://www.ibisc.univ-evry.fr/~sivanov/}
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\section{Career overview}
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\label{sec:career}
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\cvsecrule
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\noindent
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\begin{tabularx}{\textwidth}{>{\bf}p{3cm} X}
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2017-- & \textbf{Maître de conférences --- Associate Professor} (tenured) \\
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& \textit{50\% research, 50\% teaching} \\
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& IBISC Laboratory --- Department of Computer Science \\
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& Université d'Évry Paris-Saclay \\[\timeskip]
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2016--2017 & \textbf{Post-doctoral position} \\
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& \textit{Biomechanical modelling of blood platelet cytoskeleton during platelet activation} \\
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& Supervisor: \textbf{Nicolas \textsc{Glade}} \\
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& TIMC Laboratory CNRS UMR 5525 \\
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& Université Grenoble-Alpes \\[\timeskip]
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2015--2016 & \textbf{Attaché Temporaire d'Enseignement et de Recherche ---} \\
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& \textbf{Temporary Teaching Assistant} \\
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& LACL Laboratory \\
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& Université Paris-Est Créteil \\[\timeskip]
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2012--2015 & \textbf{PhD student} \\
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& \textit{On the Power and Universality of Biologically-inspired Models of Computation} \\
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& Director: \textbf{Sergey \textsc{Verlan}}, defended on 2015-06-23 \\
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& LACL Laboratory \\
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& $192\text{h} = 3 \times 64\text{h}$ of teaching at the Departement of Computer Science \\
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& Université Paris-Est Créteil \\[\timeskip]
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\end{tabularx}
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\noindent
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\begin{tabularx}{\textwidth}{>{\bf}p{3cm} X}
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2011--2012 & \textbf{M1 student} \\
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& MSc programme \textit{Mathematics and Computer Science} \\
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& Google Summer of Code 2012 participant \\
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& University of the Academy of Science of Moldova \\[\timeskip]
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2009--2012 & \textbf{Research engineer} (part time) \\
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& Supervisor: \textbf{Yurii \textsc{Rogozhin}} \\
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& Institute of Mathematics and Computer Science of Moldova \\[\timeskip]
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2007--2011 & \textbf{Bachelor in Computer Engineering} \\
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& \emph{Average grade over the 4 years: 10 out of 10} \\
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& Google Summer of Code 2008 participant \\
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& Technical University of Moldova
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\end{tabularx}
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\section{PhD thesis}
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\label{sec:phd-thesis}
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\cvsecrule
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\newcommand{\phdskip}{1mm}
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\begin{tabularx}{\textwidth}{>{\bf}lX}
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Title: & \emph{On the Power and Universality of Biologically-inspired Models of Computation} \\
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& \textit{\footnotesize Étude de la puissance d’expression et de l’universalité des modèles de calcul inspirés par la biologie} \\[\phdskip]
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Director: & Sergey \textsc{Verlan} \\[\phdskip]
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Defense: & June 23, 2015 (2015-06-23) \\[\phdskip]
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Institution: & Laboratoire d'Algorithmique, Complexité et Logique (LACL) \\
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& Université Paris-Est Créteil \\
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& doctoral contract attached to Université Paris-Est \\
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\end{tabularx}
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\subsection*{PhD thesis jury}
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\label{sec:phd-thesis-jury}
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\newcommand{\phdjuryskip}{2mm}
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\begin{tabularx}{\textwidth}{Xr}
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\textbf{Jean-Louis \textsc{Giavitto}} & President \\
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CNRS Senior scientist (DR CNRS) at IRCAM \\[\phdjuryskip]
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\textbf{Jérôme \textsc{Durand-Lose}} & Reviewer \\
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Full Professor at Université d'Orléans \\[\phdjuryskip]
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\textbf{Gheorghe \textsc{Păun}} & Reviewer \\
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Titular member of the Romanian Academy \\[\phdjuryskip]
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\textbf{Philippe \textsc{Schnoebelen}} & Reviewer \\
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CNRS Senior scientist (DR CNRS) at LSV lab (now LMF) \\[\phdjuryskip]
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\textbf{Enrico \textsc{Formenti}} & Examiner \\
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Full Professor at Université Côte d'Azur \\[\phdjuryskip]
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\textbf{Elisabeth \textsc{Pelz}} & Examiner \\
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Full Professor at Université Paris-Est Créteil
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\end{tabularx}
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\section{Teaching}
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\label{sec:teaching}
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\cvsecrule
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My teaching spans most university years, starting from L1 (freshman
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year) through to M2 (second year of the Master's program). I mostly
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teach computer science and engineering at the \emph{licence} level
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(approximately, bachelor), and mostly theoretical biology, network
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biology, and bioinformatics at the Master's level. I have
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a \textbf{CRCT} (approximately, \textbf{sabbatical}) for the school
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year 2023--2024.
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The following tables briefly list the courses I teach, am in charge of
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(marked with the sign $\star$), or share the responsibility of (marked
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with the sign $\ast$), together with the typical teaching hours.
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I only describe the time period after I obtained the current tenured
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Maître de conférences --- Associate Professor position.
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\pagebreak
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\subsection{Master's level courses}
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\label{sec:teaching-msc}
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\cvsecrule
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\newcommand{\teachingskip}{2mm}
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\begin{tabularx}{\textwidth}{>{\bf}ll X}
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2022--2023 & M2 GENIOMHE & \textbf{Computational DNA nanotechnology}$\ast$ \\
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&& \emph{SI:}\footnote{Hours taught by Sergiu \textsc{Ivanov}.} 7.5h CM+TD, Damien \textsc{Regnault}: 7.5h CM+TD \\[\teachingskip]
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2017--2023 & M2 GENIOMHE & \textbf{Computational Systems Biology \& Network Medicine}$\ast$ \\
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&& \emph{SI:} 12h CM+TD, Franck \textsc{Delaplace}: 12CM+TD \\[\teachingskip]
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2017--2023 & M2 SSB & \textbf{Network Systems: Modelling and Analysis}$\ast$ \\
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&& \emph{SI:} 12h CM+TD, Franck \textsc{Delaplace}: 9CM+TD \\[\teachingskip]
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2017--2023 & M2 CNS & \textbf{Systèmes multi-agents}$\ast$ \\
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&& \emph{SI:} 9h CM+TD, Guillaume \textsc{Hutzler}: 9h CM+TD \\[\teachingskip]
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\end{tabularx}
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\subsection{Bachelor level courses}
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\label{sec:teaching-licence}
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\cvsecrule
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\begin{tabularx}{\textwidth}{>{\bf}ll X}
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2017--2023 & L3 informatique & \textbf{Projet Professionnel d'Études et d'Insertion}$\star$ \\
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&& \emph{SI:} 9h TD \\[\teachingskip]
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2017--2023 & L3 informatique & \textbf{Systèmes d'exploitation}$\star$ \\
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&& \emph{SI:} 18h CM + 18h TD \\[\teachingskip]
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2020--2023 & L2 informatique & \textbf{Programmation système} \\
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&& \emph{SI:} 18h TD \\[\teachingskip]
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2017--2023 & L1 informatique & \textbf{Algorithmique et programmation} \\
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&& \emph{SI:} 36h TD \\[\teachingskip]
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2017--2023 & L1 informatique & \textbf{Programmation impérative} \\
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&& \emph{SI:} 36h TD \\[\teachingskip]
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2020--2023 & L1 informatique & \textbf{Méthodologie} \\
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&& \emph{SI:} 12h TD \\[\teachingskip]
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2019--2021 & L1 informatique & \textbf{Architecture} \\
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&& \emph{SI:} 18h TD \\[\teachingskip]
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2018--2021 & L1 informatique & \textbf{Émulateur pédagogique} \\
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&& \emph{Supplementary course for Parcoursup candidates with the decision OUI-SI.} \\
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&& \emph{SI:} 10h TD \\[\teachingskip]
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\end{tabularx}
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\subsection{Other courses}
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\label{sec:teaching-other}
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\cvsecrule
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\begin{tabularx}{\textwidth}{>{\bf}ll X}
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2020 & Open online class & \textbf{Introduction to Membrane Computing}$\ast$ \\
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&& \emph{SI:} 4h CM online + 4h TD online,\\
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&& David \textsc{Orellana-Martín}: 6h CM online + 4h TD online \\[\teachingskip]
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2017--2024 & Popular science & \textbf{Fête de la Science --- Science Days}$\ast$ \\
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&& \emph{SI:} 2 full days on the stand + organization
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\end{tabularx}
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\subsection{Teaching and research}
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\label{sec:teaching-research}
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\cvsecrule
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All Master's level courses I teach are directly connected to my
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research. In the course \textbf{Computational DNA nanotechnology}, we
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introduce the students to DNA self-assembly and its potential
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applications, including applications in biology and medicine.
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We directly overview the state of the project I share with Damien
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\textsc{Regnault} to build a functioning pipeline for self-assembly of
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DNA nanostructures, spanning the entire spectrum from theoretical
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design to actual wet-lab production.
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Both the courses \textbf{Computational Systems Biology \& Network
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Medicine} and \textbf{Network Systems: Modelling and Analysis} focus
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on another major pillar of my research: approaching the complexity of
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biological systems using the tools of network science and discrete
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dynamical systems. More concretely, in these classes we introduce the
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students to the basics of graph theory, and then extensively discuss
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two formal models of discrete dynamical networks---Boolean networks
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and Petri nets---as well as show concrete applications for therapy
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inference or setting up formal frameworks for thinking about the
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origins of Life.
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Finally, I use the course \textbf{Systèmes multi-agents}
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(\emph{Multi-agent systems}) as an opportunity to introduce the
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students to emergent complexity of the living systems, made up of
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simple entities interacting in complex ways. In this course, we
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discuss different tools which can formalize multi-agent systems---in
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particular membrane (P) systems---and propose several practical
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assignments to help the students better understand the connection
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between abstract objects and concrete systems.
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Outside my normal teaching activity, I particularly appreciate
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\textbf{Science Days} (\emph{Fêtes de la Science}), which are always
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an excellent opportunity to illustrate the hallmarks of my research to
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school students and the general public. I have taken part in Science
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Days every year, including during the pandemic when we held online
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stands, and I have consistently invested a considerable effort in
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organizing the stands.
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Finally, even though my bachelor level courses are not in direct
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connection to my research, I always necessarily bring in discussions
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of complexity and even theoretical biology, to illustrate some
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abstract concepts on the one hand, and to challenge the students and
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push them out of their comfort zone on the other hand.
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\section{Organization of scientific events}
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\label{sec:management}
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\cvsecrule
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\newcommand{\eventskip}{2mm}
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\begin{tabularx}{\textwidth}{>{\bf}p{27mm} X}
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2022 & \textbf{IBISC Laboratory Day} \\
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& coorganization with Guillaume \textsc{Postic} \\[\eventskip]
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2022 & Seminar \textbf{Atelier sur la Théorie Ataviste du Cancer --- ATAC2022} \\
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& \emph{Workshop on the Atavistic Theory of Cancer} \\
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& coorganization with Nicolas \textsc{Glade} and Angélique \textsc{Stéphanou} \\[\eventskip]
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2020 & Online \textbf{Conference on Membrane Computing --- CMC 2020} \\
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& coorganization with Rudolf \textsc{Freund} \\[\eventskip]
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2018 & Seminar of the \textbf{Société Francophone de Biologie Théorique} \\
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& \emph{French-speaking Society for Theoretical Biology} \\
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& coorganization with Nicolas \textsc{Glade} and Angélique \textsc{Stéphanou} \\[\eventskip]
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2018 & Joint conferences \textbf{Unconventional Computation, Natural Computation --- UCNC2018} and \textbf{Machines, Computations, and Universality --- MCU 2018} \\
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& main organizer: Sergey \textsc{Verlan} \\[\eventskip]
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2018 & \textbf{Workshop on Membrane Computing} \\
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& conference \emph{Unconventional Computation, Natural Computation --- UCNC 2018} \\
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& coorganization with Rudolf \textsc{Freund} \\[\eventskip]
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2017 & \textbf{IBISC Laboratory Day} \\
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& coorganization with Najett \textsc{Neji} \\[\eventskip]
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\end{tabularx}
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\section{Scientific roles}
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\label{sec:roles}
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\cvsecrule
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\newcommand{\roleskip}{2mm}
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\begin{tabularx}{\textwidth}{>{\bf}p{27mm} X}
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2022--2026 & Elected member of the \textbf{Research Commission} of Université d'Évry Paris-Saclay \\[\roleskip]
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2021--2023 & Elected member of the \textbf{IBISC Laboratory Council} \\[\roleskip]
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2019--2021 & Appointed member of the \textbf{IBISC Laboratory Council} \\[\roleskip]
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\end{tabularx}
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\noindent
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\begin{tabularx}{\textwidth}{>{\bf}p{27mm} X}
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2020-- & Manager of the \textbf{work group on personalized medicine} of IBISC \\
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& \emph{Axe transverse Médecine personnalisée} \\
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& coorganization with Farida \textsc{Zehraoui} \\[\roleskip]
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2017-- & IBISC representative to the group \textbf{Méthodes
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Formelles pour les Systèmes Logiciels et Matériels --- MeFoSyLoMa}
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(\emph{Formal Methods for Software and Hardware systems}) \\[\roleskip]
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\end{tabularx}
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\section{Projects and grants}
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\label{sec:projects}
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\cvsecrule
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\newcommand{\projectskip}{2mm}
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\begin{tabularx}{\textwidth}{>{\bf}l p{15mm} X}
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2022 & FRR\footnote{Fonds pour le Rayonnement de la Recherche de l'Université d'Évry Paris-Saclay} & \textbf{Mise en place de projets expérimentaux sur l'auto-assemblage de l'ADN} \\
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& \textbf{3 k€} & \emph{Setting up experimental projects in DNA self-assembly} \\
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&& Role: \textbf{Principal Investigator} \\
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&& Other Principal investigator: Damien \textsc{Regnault} \\[\projectskip]
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2021 & IXXI\footnote{Institut Rhônalpin des Systèmes Complexes} \textbf{4~k€} &
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\textbf{Exploration de l'évolutivité et de la robustesse des réseaux
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biologiques – Caractérisation des composantes connexes
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structurelles et dynamiques des réseaux booléens à signes et
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contraintes de viabilité} \\
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&& \emph{Exploration of evolutivity and robustness of biological
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networks — Characterisation of structural and dynamic connected
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components of sign Boolean networks, as well as of viability
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constraints} \\
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&& Role: \textbf{Investigator} \\
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&& Principal investigator: Nicolas \textsc{Glade} \\[\projectskip]
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2018--2019 & DIM RFSI & \textbf{Modèles Informatiques pour la Reprogrammation Cellulaire} \\
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& \textbf{11 k€} & \emph{Computer Science Models for Cellular Reprogramming} \\
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&& Role: \textbf{Principal investigator} \\
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&& Other investigators: Franck \textsc{Delaplace}, Loïc \textsc{Paulevé} \\
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\end{tabularx}
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\section{Distinctions}
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\label{sec:distinctions}
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\cvsecrule
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\begin{tabularx}{\textwidth}{>{\bf}p{27mm} X}
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2023--2025 & \textbf{RIPEC C3 for scientific activity} \\
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& \textit{3-year monthly ministerial premium for outstanding research work} \\[2mm]
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2023--2024 & \textbf{Congé de Recherche ou de Conversion Thématique --- CRCT} \\
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& \textit{Leave for research or thematic conversion} \\
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& 1 term granted by the National University Council\footnote{Conseil National des Universités (CNU)} \\
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& 1 term granted by Université d'Évry Paris-Saclay \\
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\end{tabularx}
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\section{Reviews and editorial activity}
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\label{sec:reviews}
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\cvsecrule
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\subsection{Program and scientific committees}
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\label{sec:program-committees}
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\newcommand{\pcskip}{2mm}
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\begin{tabularx}{\textwidth}{>{\bf}p{27mm} X}
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2023 & \textbf{Non-Classical Models of Automata and Applications} (NCMA) \\
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& Member of the Program Committee \\[\pcskip]
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2022--2023 & \textbf{Conference on Membrane Computing} (CMC) \\
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& Member of the Program Committee \\[\pcskip]
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2022-- & \textbf{Computer Science Journal of Moldova} \\
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& Member of the Editorial Board \\[\pcskip]
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\end{tabularx}
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\begin{tabularx}{\textwidth}{>{\bf}p{27mm} X}
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2020 & \textbf{International Conference on Membrane Computing} (ICMC) \\
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& Co-chair of the Program Committee \\[\pcskip]
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2018 & \textbf{Unconventional Computation and Natural Computation} (UCNC) \\
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& Member of the Program Committee \\[\pcskip]
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2018--2019 & \textbf{Acta Biotheoretica} \\
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& Guest editor after the seminar of the \emph{Société Francophone de la Biology Théorique} \\[\pcskip]
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\end{tabularx}
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\subsection{Journal reviews}
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\label{sec:journal-reviews}
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I have reviewed and regularly review papers for the
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following journals.
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\vspace{2mm}
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{\renewcommand{\arraystretch}{1.2}
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\noindent
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\begin{tabularx}{\textwidth}{XcX}
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\textbf{Theoretical Computer Science} (Elsevier) & \hspace{5mm} & \textbf{Fundamenta Informaticae} (IOS Press)\\[0pt]
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\textbf{Lecture Notes for Computer Science} (Springer) & & \textbf{Journal of Cellular Automata} (Old City Publishing)\\[0pt]
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\textbf{Swarm and Evolutionary Computation} (Elsevier) & & \textbf{Socio-Ecological Practice Research} (Springer)\\[0pt]
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\textbf{Journal of Symbolic Computation} (Elsevier) & & \textbf{Journal of Membrane Computing} (Springer)\\[0pt]
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\textbf{International Journal of Foundations of Computer Science} (World Scientific) & & \textbf{Indian Journal of Pure and Applied Mathematics} (Springer)\\[0pt]
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\textbf{Computer Science Journal of Moldova} (Institute of Mathematics and Computer Science ``Vladimir Andrunachievici'') & & \textbf{Journal of Automata, Languages, and Combinatorics} (Institut für Informatik, Justus-Liebig-Universität Giessen)\\[0pt]
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\textbf{Concurrency and Computation: Practice and Experience} (Wiley) & & \textbf{Natural Computing} (Springer)\\[0pt]
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\end{tabularx}
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}
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\vspace{2mm}
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\noindent
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Since 2021, I am a recommender for \textbf{Peer Community In
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Mathematical and Computational Biology}.
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\subsection{Conference reviews}
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\label{sec:conference-reviews}
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I reviewed papers for the following conferences multiple times,
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without being on the Program Committee.
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\vspace{2mm}
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{\renewcommand{\arraystretch}{1.2}
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\noindent
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\begin{tabularx}{\textwidth}{X}
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\textbf{Conference on Membrane Computing} (CMC)\\[0pt]
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\textbf{Machines, Computations, and Universality} (MCU)\\[0pt]
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\textbf{Developments in Language Theory} (DLT)\\[0pt]
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\textbf{Unconventional Computation and Natural Computation} (UCNC)\\[0pt]
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\end{tabularx}
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}
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\section{Jurys}
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\label{sec:jurys}
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\cvsecrule
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\subsection{PhD defences}
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\label{sec:phd-defences}
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\subsubsection{Sara \textsc{Riva}}
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\label{sec:sara-riva}
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\begin{tabularx}{\textwidth}{>{\bf}lX}
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Title: & \textbf{Factorization of Discrete Dynamic Systems} \\
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& \textit{Factorisation de Systèmes Dynamiques Discrets} \\
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Jury role: & \textbf{Examiner} \\
|
||
Director: & Enrico \textsc{Formenti}, Université Côte d'Azur \\
|
||
Co-director: & Alberto \textsc{Dennunzio}, Università degli Studi di Milano-Bicocca \\
|
||
Duration: & 2019--2022 \\
|
||
Defense: & November 22, 2022 (2022-11-22) \\
|
||
Institution: & Université Côte d'Azur
|
||
\end{tabularx}
|
||
|
||
\subsection{Individual PhD monitoring committees (CSI)}
|
||
\label{sec:csi}
|
||
|
||
I here list individual PhD monitoring committees (\textit{Comités de
|
||
Suivi Individuel}, CSI) I am part of, as well as my roles in these
|
||
committees (\emph{SI's role}).
|
||
|
||
\subsubsection{Hala \textsc{Djeghim}}
|
||
\label{sec:hala-djeghim}
|
||
|
||
\begin{tabularx}{\textwidth}{>{\bf}lX}
|
||
Title: & \textbf{In-details scene understanding for realistic data generation} \\
|
||
Directors: & Dro Désiré \textsc{Sidibé}, Université Évry Paris-Saclay \\
|
||
& Nathan \textsc{Piasco}, Huawei \\
|
||
Durée: & 2023-- \\
|
||
Institution: & Université Paris-Saclay \\
|
||
SI's role: & President \\
|
||
\end{tabularx}
|
||
|
||
\subsubsection{Sofía \textsc{Vargas Ibarra}}
|
||
\label{sec:sofia-vargas}
|
||
|
||
\begin{tabularx}{\textwidth}{>{\bf}lX}
|
||
Title: & \textbf{Thrombus imaging with AI for patients stratification} \\
|
||
Directors: & Vincent \textsc{Vigneron}, Université Évry Paris-Saclay \\
|
||
& Sonia \textsc{Garcia-Salicetti}, Télécom SudParis \\
|
||
Durée: & 2022-- \\
|
||
Institution: & Université Paris-Saclay \\
|
||
SI's role: & President \\
|
||
\end{tabularx}
|
||
|
||
\subsubsection{Rémi \textsc{Segretain}}
|
||
\label{sec:remi-segretain}
|
||
|
||
\begin{tabularx}{\textwidth}{>{\bf}lX}
|
||
Title: & \textbf{Complexity and evolution: a study of sign Boolean networks} \\
|
||
& \emph{Complexité et évolution : étude des réseaux booléens à signe} \\
|
||
Director: & Nicolas \textsc{Glade}, Université Grenoble-Alpes \\
|
||
Duration: & 2019-- \\
|
||
Institution: & Université Grenoble-Alpes \\
|
||
SI's role: & Member \\
|
||
\end{tabularx}
|
||
|
||
\subsection{Committees for \emph{Maître de conférences} positions (CoS)}
|
||
\label{sec:mcf}
|
||
|
||
{\renewcommand{\arraystretch}{1.2}
|
||
\begin{tabularx}{\textwidth}{>{\bf}p{19mm} X}
|
||
2024 & MCF CNU 27 at Université d'Évry Paris-Saclay (IBISC) \\
|
||
2022 & MCF CNU 27 at Université Paris-Est Créteil (EPISEN / LACL) \\
|
||
2022 & MCF CNU 27 at Université d'Évry Paris-Saclay (IBISC) \\
|
||
\end{tabularx}
|
||
}
|
||
|
||
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