Add the two new .bib files to the repository.
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Sergiu Ivanov
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@article{FreundO14,
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author = {Rudolf Freund and
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Marion Oswald},
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title = {Array Grammars and Automata on Cayley Grids},
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journal = {Journal of Automata, Languages and Combinatorics},
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volume = {19},
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number = {1-4},
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pages = {67--80},
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year = {2014},
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timestamp = {Tue, 09 Sep 2014 16:47:07 +0200},
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biburl = {http://dblp.uni-trier.de/rec/bib/journals/jalc/FreundO14},
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bibsource = {dblp computer science bibliography, http://dblp.org}
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}
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%% This BibTeX bibliography file was created using BibDesk.
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%% http://bibdesk.sourceforge.net/
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%% Created for Ion Petre at 2014-10-03 16:02:53 +0300
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%% Saved with string encoding Unicode (UTF-8)
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@techreport{meski2014,
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Author = {Meski, Artur and Penczek, Wojciech and Rozenberg, Grzegorz},
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Date-Added = {2014-10-03 13:01:29 +0000},
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Date-Modified = {2014-10-03 13:02:44 +0000},
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Institution = {University of Warsaw},
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Number = {1028},
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Title = {Model checking temporal properties of reaction systems},
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Year = {2014}}
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@article{mauri2012,
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Author = {Luca Corolli and Carlo Maj and Fabrizio Marini and Daniela Besozzi and Giancarlo Mauri},
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Bibsource = {dblp computer science bibliography, http://dblp.org},
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Biburl = {http://dblp.uni-trier.de/rec/bib/journals/tcs/CorolliMMBM12},
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Doi = {10.1016/j.tcs.2012.04.003},
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Journal = {Theoretical Computer Science},
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Pages = {95--108},
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Timestamp = {Fri, 03 Oct 2014 14:54:30 +0200},
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Title = {An excursion in reaction systems: From computer science to biology},
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Url = {http://dx.doi.org/10.1016/j.tcs.2012.04.003},
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Volume = {454},
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Year = {2012},
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Bdsk-Url-1 = {http://dx.doi.org/10.1016/j.tcs.2012.04.003}}
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@inproceedings{salomaa2012b,
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Author = {Salomaa, Arto},
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Booktitle = {Kozen Fetschrift},
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Date-Added = {2014-10-03 12:44:53 +0000},
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Date-Modified = {2014-10-03 12:46:56 +0000},
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Editor = {R.L. Constable, A. Silva},
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Number = {7230},
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Pages = {271-282},
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Series = {LNCS},
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Title = {On state sequences defined by reaction systems},
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Year = {2012}}
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@article{salomaa2013,
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Author = {Salomaa, Arto},
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Date-Added = {2014-10-03 12:42:44 +0000},
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Date-Modified = {2014-10-03 12:44:28 +0000},
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Journal = {International Journal of Foundations of Computer Science},
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Number = {1},
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Pages = {147-159},
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Title = {Functional constructions between reaction systems and propositional logic},
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Volume = {24},
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Year = {2013}}
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@article{salomaa2012,
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Author = {Salomaa, Arto},
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Date-Added = {2014-10-03 12:40:28 +0000},
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Date-Modified = {2014-10-03 12:41:35 +0000},
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Journal = {Theoretical Computer Science},
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Pages = {87-96},
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Title = {Functions and sequences generated by reaction systems},
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Volume = {466},
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Year = {2012}}
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@article{ehrenfeucht2007reaction,
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Author = {Ehrenfeucht, Andrzej and Rozenberg, Grzegorz},
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Journal = {Fundamenta Informaticae},
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Number = {1},
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Pages = {263--280},
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Publisher = {IOS Press},
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Title = {Reaction systems},
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Volume = {75},
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Year = {2007}}
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@article{ehrenfeucht2011functions,
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Author = {Ehrenfeucht, Andrzej and Main, Michael and Rozenberg, Grzegorz},
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Journal = {International Journal of Foundations of Computer Science},
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Number = {01},
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Pages = {167--178},
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Publisher = {World Scientific},
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Title = {Functions defined by reaction systems},
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Volume = {22},
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Year = {2011}}
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@article{azimi2014reaction,
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Author = {Azimi, Sepinoud and Iancu, Bogdan and Petre, Ion},
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Journal = {Fundamenta Informaticae},
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Number = {3},
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Pages = {299--312},
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Publisher = {IOS Press},
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Title = {Reaction System Models for the Heat Shock Response},
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Volume = {131},
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Year = {2014}}
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@incollection{form-cgars,
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Author = {Formenti, Enrico and Manzoni, Luca and Porreca, AntonioE.},
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Booktitle = {Descriptional Complexity of Formal Systems},
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Doi = {10.1007/978-3-319-09704-6_11},
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Editor = {J{\"u}rgensen, Helmut and Karhum{\"a}ki, Juhani and Okhotin, Alexander},
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Isbn = {978-3-319-09703-9},
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Language = {English},
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Pages = {114-125},
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Publisher = {Springer International Publishing},
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Series = {Lecture Notes in Computer Science},
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Title = {Cycles and Global Attractors of Reaction Systems},
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Url = {http://dx.doi.org/10.1007/978-3-319-09704-6_11},
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Volume = {8614},
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Year = {2014},
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Bdsk-Url-1 = {http://dx.doi.org/10.1007/978-3-319-09704-6_11}}
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@incollection{form-fpla,
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Author = {Formenti, Enrico and Manzoni, Luca and Porreca, Antonio E.},
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Booktitle = {Language, Life, Limits},
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Doi = {10.1007/978-3-319-08019-2_20},
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Editor = {Beckmann, Arnold and Csuhaj-Varj{\'u}, Erzs{\'e}bet and Meer, Klaus},
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Isbn = {978-3-319-08018-5},
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Language = {English},
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Pages = {194-203},
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Publisher = {Springer International Publishing},
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Series = {Lecture Notes in Computer Science},
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Title = {Fixed Points and Attractors of Reaction Systems},
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Url = {http://dx.doi.org/10.1007/978-3-319-08019-2_20},
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Volume = {8493},
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Year = {2014},
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Bdsk-Url-1 = {http://dx.doi.org/10.1007/978-3-319-08019-2_20}}
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@article{brij-atofrs,
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Author = {Robert Brijder and Andrzej Ehrenfeucht and Michael G. Main and Grzegorz Rozenberg},
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Bibsource = {DBLP, http://dblp.uni-trier.de},
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Ee = {http://dx.doi.org/10.1142/S0129054111008842},
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Journal = {International Journal of Foundations of Computer Science},
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Number = {7},
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Pages = {1499-1517},
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Title = {A Tour of reaction Systems},
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Volume = {22},
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Year = {2011}}
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@book{gibbons1985algorithmic,
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Author = {Gibbons, Alan},
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Isbn = {9780521288811},
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Lccn = {lc84023835},
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Publisher = {Cambridge University Press},
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Title = {Algorithmic Graph Theory},
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Url = {http://books.google.fi/books?id=Be6t04pgggwC},
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Year = {1985},
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Bdsk-Url-1 = {http://books.google.fi/books?id=Be6t04pgggwC}}
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@book{immerman1999descriptive,
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Author = {Immerman, Neil},
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Isbn = {9780387986005},
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Lccn = {lc98033563},
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Publisher = {Springer New York},
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Series = {Graduate texts in computer science},
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Title = {Descriptive Complexity},
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Url = {http://books.google.fr/books?id=kWSZ0OWnupkC},
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Year = {1999},
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Bdsk-Url-1 = {http://books.google.fr/books?id=kWSZ0OWnupkC}}
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@inproceedings{formenti2014b,
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Author = {Formenti, Enrico and Manzoni, Luca and Porreca, Antonio E.},
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Booktitle = {Descriptional Complexity of Formal Systems},
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Doi = {10.1007/978-3-642-32208-2_11},
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Editor = {J{\"u}rgensen, Helmut and Karhum{\"a}ki, Juhani and Okhotin, Alexander},
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Pages = {114--125},
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Publisher = {Springer},
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Series = {Lecture Notes in Computer Science},
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Title = {Cycles and Global Attractors of Reaction Systems},
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Volume = {8614},
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Year = {2014},
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Bdsk-Url-1 = {http://dx.doi.org/10.1007/978-3-642-32208-2_11}}
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@inproceedings{formenti2014a,
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Author = {Formenti, Enrico and Manzoni, Luca and Porreca, Antonio E.},
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Booktitle = {Language, Life, Limits, 10th Conference on Computability in Europe, CiE 2014},
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Doi = {10.1007/978-3-319-08019-2_20},
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Editor = {Beckmann, Arnold and Csuhaj-Varj\'u, Erzs\'ebet and Meer, Klaus},
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Pages = {194--203},
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Publisher = {Springer},
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Series = {Lecture Notes in Computer Science},
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Title = {Fixed Points and Attractors of Reaction Systems},
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Volume = {8493},
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Year = {2014},
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Bdsk-Url-1 = {http://dx.doi.org/10.1007/978-3-319-08019-2_20}}
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@book{papadimitriou1993a,
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Author = {Papadimitriou, Christos H.},
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Publisher = {Addison-Wesley},
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Title = {Computational Complexity},
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Year = {1993}}
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@book{libkin2012a,
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Author = {Libkin, Leonid},
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Publisher = {Springer},
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Title = {Elements of Finite Model Theory},
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Year = {2012}}
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@book{Cormen:2001:IA:580470,
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Author = {Cormen, Thomas H. and Stein, Clifford and Rivest, Ronald L. and Leiserson, Charles E.},
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Edition = {2nd},
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Isbn = {0070131511},
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Publisher = {McGraw-Hill Higher Education},
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Title = {Introduction to Algorithms},
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Year = {2001}}
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@article{petre2011simple,
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Author = {Petre, Ion and Mizera, Andrzej and Hyder, Claire L. and Meinander, Annika and Mikhailov, Andrey and Morimoto, Richard I. and Sistonen, Lea and Eriksson, John E. and Back, Ralph-Johan},
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Journal = {Natural Computing},
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Number = {1},
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Pages = {595--612},
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Publisher = {Springer},
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Title = {A simple mass-action model for the eukaryotic heat shock response and its mathematical validation},
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Volume = {10},
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Year = {2011}}
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@article{rieger2005mathematical,
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Author = {Rieger, Theodore R. and Morimoto, Richard I. and Hatzimanikatis, Vassily},
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Journal = {Biophysical journal},
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Number = {3},
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Pages = {1646--1658},
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Publisher = {Elsevier},
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Title = {Mathematical Modeling of the Eukaryotic Heat-Shock Response: Dynamics of the hsp70 promoter},
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Volume = {88},
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Year = {2005}}
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@book{klipp2008systems,
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Author = {Klipp, Edda and Herwig, Ralf and Kowald, Axel and Wierling, Christoph and Lehrach, Hans},
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Publisher = {John Wiley \& Sons},
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Title = {Systems biology in practice: concepts, implementation and application},
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Year = {2008}}
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@article{provan1983complexity,
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Author = {Provan, J Scott and Ball, Michael O.},
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Journal = {SIAM Journal on Computing},
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Number = {4},
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Pages = {777--788},
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Publisher = {SIAM},
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Title = {The complexity of counting cuts and of computing the probability that a graph is connected},
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Volume = {12},
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Year = {1983}}
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@incollection{Voellmy2,
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year={2007},
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isbn={978-0-387-39974-4},
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booktitle={Molecular Aspects of the Stress Response: Chaperones, Membranes and Networks},
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volume={594},
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series={Advances in Experimental Medicine and Biology},
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editor={Csermely, Peter and V\'{i}gh, L\'{a}szl\'{o}},
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doi={10.1007/978-0-387-39975-1_9},
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title={Chaperone Regulation of the Heat Shock Protein Response},
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url={http://dx.doi.org/10.1007/978-0-387-39975-1_9},
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publisher={Springer New York},
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author={Voellmy, Richard and Boellmann, Frank},
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pages={89-99},
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language={English}
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}
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