64 lines
1.8 KiB
Racket
64 lines
1.8 KiB
Racket
#lang scribble/manual
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@(require scribble/example racket/sandbox
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(for-label typed/racket/base
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(submod "../rs.rkt" typed)))
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@(define rs-evaluator
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(parameterize ([sandbox-output 'string]
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[sandbox-error-output 'string]
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[sandbox-memory-limit 500])
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(make-evaluator 'typed/racket #:requires '((submod "rs.rkt" typed)))))
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@(define-syntax-rule (ex . args)
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(examples #:eval rs-evaluator . args))
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@(define-syntax-rule (deftypeform . args)
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(defform #:kind "type" . args))
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@(define-syntax-rule (deftype . args)
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(defidform #:kind "type" . args))
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@title[#:tag "rs"]{dds/rs: Reaction Systems}
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@defmodule[(submod dds/rs typed)]
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This module defines reaction systems and various tools for working with them.
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@section[#:tag "rs-basics"]{Basic definitions}
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@deftype[Species]{
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A synonym of @racket[Symbol].
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}
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@defstruct*[reaction ([reactants (Setof Species)]
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[inhibitors (Setof Species)]
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[products (Setof Species)])]{
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A reaction is a triple of sets, giving the reactants, the inhibitors,
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and the products, respectively.
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}
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@deftype[Reaction]{
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The type of the instances of @racket[reaction].
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}
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@section{Org-mode interaction}
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This section contains some useful primitives for
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@hyperlink["https://orgmode.org/"]{Org-mode} interoperability.
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@section{Dynamics of reaction systems}
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The dynamics of reaction systems is typically defined as @emph{interaction
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processes}. An interactive process of a reaction system is a sequence of
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states driven by a sequence of contexts in the following way. The reaction
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system starts with the initial context. Then, at every step, the result of
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applying the reaction system is merged with the next element of the context
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sequence, and the reaction system is then applied to the result of the union.
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If the sequence of contexts is empty, the reaction system cannot evolve.
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