Commit graph

476 commits

Author SHA1 Message Date
Sergiu Ivanov
cbdfdabe7a example: Illustrate building interactive processes. 2020-03-03 01:01:21 +01:00
Sergiu Ivanov
0d73b33ff3 example: Some updates to the state graph of the reaction system. 2020-03-03 01:01:00 +01:00
Sergiu Ivanov
d958533d2c rs: Make build-interactive-process run for one extra step. 2020-03-03 01:00:21 +01:00
Sergiu Ivanov
9ce3040240 rs: Add build-interactive-process. 2020-03-03 00:51:53 +01:00
Sergiu Ivanov
9cfab2e45d rs: build-interactive-process -> build-interactive-process-graph. 2020-03-03 00:27:52 +01:00
Sergiu Ivanov
fcb4474858 rs: Explain why we need to print the whole context sequence. 2020-03-03 00:26:45 +01:00
Sergiu Ivanov
227dfff14a example: Illustrate state graphs for reaction systems. 2020-03-03 00:25:26 +01:00
Sergiu Ivanov
cf99c8acf3 rs: Add pretty-print-state and use it in update-graph. 2020-03-03 00:25:06 +01:00
Sergiu Ivanov
f22d42f98c rs: Add pretty-print-state-graph. 2020-03-03 00:12:45 +01:00
Sergiu Ivanov
a3967d8bf8 utils: Move pretty-print-modalities as pretty-print-set-sets from networks. 2020-03-02 23:59:37 +01:00
Sergiu Ivanov
de9b703b44 rs: Add build-interactive-process. 2020-03-02 23:50:32 +01:00
Sergiu Ivanov
d753409a2f rs,state: Explicitly state what happens when there are no more contexts. 2020-03-02 23:42:03 +01:00
Sergiu Ivanov
b5f5eb55fc utils: Move drop-first-last from rs and add list-sets->list-strings. 2020-03-02 23:39:27 +01:00
Sergiu Ivanov
c0d36a34a7 rs: Add read-ctx and illustrate it in example.org. 2020-03-02 23:11:26 +01:00
Sergiu Ivanov
171147ad5e rs: Add read-context-sequence. 2020-03-02 23:03:10 +01:00
Sergiu Ivanov
42b7dce359 utils: Move read-symbol-list from rs. 2020-03-02 23:00:46 +01:00
Sergiu Ivanov
dbfa560081 utils: read-org-table -> read-org-sexp. 2020-03-02 18:42:54 +01:00
Sergiu Ivanov
a9fc272c13 example,munch-sexp: Rename the parameter tab -> sexp. 2020-03-02 18:38:39 +01:00
Sergiu Ivanov
e07c5c239c example: munch-table -> munch-sexp.
This code block can be used to prepare any sexp Org-mode produces.
2020-03-02 18:36:26 +01:00
Sergiu Ivanov
0bceb820df rs: Add the dynamics. 2020-03-02 18:32:11 +01:00
Sergiu Ivanov
868988c966 rs,union-products: Return an empty set when no reaction names are given. 2020-03-02 18:31:02 +01:00
Sergiu Ivanov
6427af17c8 example: Minor image change. 2020-03-02 18:20:24 +01:00
Sergiu Ivanov
141080d1c6 generic: Use collect-by-key/sets to collect the labels for state graphs. 2020-03-02 18:18:23 +01:00
Sergiu Ivanov
29d8e152d9 utils: ht-values:list->set -> ht-values/list->set 2020-03-02 18:17:05 +01:00
Sergiu Ivanov
45db731859 utils: Make the contract of collect-by-key more specific. 2020-03-02 18:16:25 +01:00
Sergiu Ivanov
740918a542 utils: Add collect-by-key/sets. 2020-03-02 18:15:41 +01:00
Sergiu Ivanov
64ca8f4bf1 utils: Add ht-values:list->set. 2020-03-02 18:04:59 +01:00
Sergiu Ivanov
ac7ce12a9d networks: Remove a custom definition of dds-step-one.
This method now falls back to dds-step-one-annotated.
2020-03-02 12:12:57 +01:00
Sergiu Ivanov
736f210c41 generic: Make dds-step-one fall back to dds-step-one-annotated. 2020-03-02 12:11:09 +01:00
Sergiu Ivanov
db88987c13 example: Show how to apply reaction systems. 2020-03-01 21:14:18 +01:00
Sergiu Ivanov
77c0106ea2 rs: Add some functions for showing RS as Org tables.
Also add an example to example.org.
2020-03-01 21:10:01 +01:00
Sergiu Ivanov
0051380f2b rs: Add a test for ht-str-triples->rs. 2020-03-01 20:46:06 +01:00
Sergiu Ivanov
afc043d22d rs: Fix the introduction to the section on Org-mode interop. 2020-03-01 20:43:33 +01:00
Sergiu Ivanov
c33cce731f rs: Convert to untyped racket with contracts. 2020-03-01 20:41:11 +01:00
Sergiu Ivanov
d2121bd5e6 rs: Add unorg-rs and showcase it in example.org. 2020-03-01 20:26:16 +01:00
Sergiu Ivanov
02d5384674 rs: Switch to #lang racket, but keep the types where they work. 2020-03-01 20:25:01 +01:00
Sergiu Ivanov
f16747d157 rs: Add section "Org-mode interaction". 2020-03-01 20:20:16 +01:00
Sergiu Ivanov
a77261c424 rs: Make reaction transparent. 2020-03-01 19:54:53 +01:00
Sergiu Ivanov
5c13b468e3 rs: Add apply-rs. 2020-03-01 19:51:53 +01:00
Sergiu Ivanov
86256cd47e rs: Add union-products. 2020-03-01 19:47:38 +01:00
Sergiu Ivanov
3732d4897e rs,list-enabled: Made the type signature more explicit. 2020-03-01 19:24:32 +01:00
Sergiu Ivanov
d7e189eef0 rs: Add list-enabled. 2020-03-01 19:20:24 +01:00
Sergiu Ivanov
0cb57196c5 rs: Add ReactionSystem. 2020-03-01 19:19:58 +01:00
Sergiu Ivanov
f62592574b rs: Export the Species type. 2020-03-01 19:07:16 +01:00
Sergiu Ivanov
bb247d9eb8 rs: Start. 2020-03-01 19:05:28 +01:00
Sergiu Ivanov
007c5b96bf example: Show what happens when multiple modalities cause the same state transition. 2020-03-01 18:01:53 +01:00
Sergiu Ivanov
9143f6f9fc networks: Add pretty-print-modalities and use it for state graphs. 2020-03-01 17:57:58 +01:00
Sergiu Ivanov
1fa342c2ad generic: Make fallback-dds-build-state-graph-edges collect duplicate edges. 2020-03-01 17:40:36 +01:00
Sergiu Ivanov
b2f686cdaa utils: Add collect-by-key. 2020-03-01 16:53:17 +01:00
Sergiu Ivanov
02d564a374 example: Add an example on printing annotated state graphs for networks. 2020-03-01 15:22:11 +01:00