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20
README
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20
README
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Dépot git de mon mémoire de thèse.
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La manière la plus simple de compiler le manuscrit passe par `nix-env` (il
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faut avoir le gestionnaire de paquet `nix` installé [0]). Cet outil se charge de
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récupérer ou construire toutes les dépendances nécessaires à la compilation,
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puis de les mettre à disposition dans l'environnement de l'utilisateur.
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Dans le répertoire racine du dépot, entrez:
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$ nix-shell
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puis (à cause du fonctionnement de tex):
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$ buildthesis && buildthesis
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LACL - Université Paris Est Créteil
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Financé par le projet ANR SYNBIOTIC
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Martin POTIER
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[0] http://nixos.org/nix/
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23
biblio/my.bib
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biblio/my.bib
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@inproceedings{potier_topological_2013,
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title = {Topological computation of activity regions},
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url = {http://doi.acm.org/10.1145/2486092.2486136},
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||||
doi = {10.1145/2486092.2486136},
|
||||
booktitle = {{SIGSIM} {Principles} of {Advanced} {Discrete} {Simulation}, {SIGSIM}-{PADS} '13, {Montreal}, {QC}, {Canada}, {May} 19-22, 2013},
|
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author = {Potier, Martin and Spicher, Antoine and Michel, Olivier},
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year = {2013},
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pages = {337--342}
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}
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|
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@inproceedings{potier_computing_2013,
|
||||
title = {Computing activity in space},
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booktitle = {{AAMAS} Spatial Computing Workshop, {AAMAS}-{SCW} '13, {St Paul}, {Minnesota}, {USA}, {May} 6-10, 2013},
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author = {Potier, Martin and Spicher, Antoine and Michel, Olivier},
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year = {2013},
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}
|
||||
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@article{pascalie_morphogenetic_2016,
|
||||
title = {Morphogenetic {Engineering} in {Synthetic} {Biology}},
|
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journal = {ACS Synthetic Biology},
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||||
author = {Pascalie, Jonathan and Potier, Martin and Kowaliw, Taras and Giavitto, Jean-Louis and Michel, Olivier and Spicher, Antoine and Doursat, René},
|
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year = {2016}
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||||
}
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9
biblio/standards.bib
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biblio/standards.bib
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@standard{UML,
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author = {OMG},
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||||
institution = {Object Management Group},
|
||||
organization = {Object Management Group},
|
||||
year = 2015,
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||||
title = {{OMG Unified Modeling Language (OMG UML), Version 2.5}},
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url = {http://www.omg.org/spec/UML/2.5}
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}
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||||
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764
biblio/these2015.bib
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764
biblio/these2015.bib
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@ -0,0 +1,764 @@
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@article{muzy_refounding_2013,
|
||||
title = {Refounding of the activity concept? {Towards} a federative paradigm for modeling and simulation},
|
||||
volume = {89},
|
||||
number = {2},
|
||||
journal = {Simulation},
|
||||
author = {Muzy, Alexandre and Varenne, Franck and Zeigler, Bernard P and Caux, Jonathan and Coquillard, Patrick and Touraille, Luc and Prunetti, Dominique and Caillou, Philippe and Michel, Olivier and Hill, David RC},
|
||||
year = {2013},
|
||||
pages = {156--177}
|
||||
}
|
||||
|
||||
@phdthesis{axen_topological_1998,
|
||||
address = {Champaign, IL, USA},
|
||||
title = {Topological {Analysis} {Using} {Morse} {Theory} and {Auditory} {Display}},
|
||||
school = {University of Illinois at Urbana-Champaign},
|
||||
author = {Axen, U.},
|
||||
year = {1998}
|
||||
}
|
||||
|
||||
@article{hu_devs-fire:_2011,
|
||||
title = {{DEVS}-{FIRE}: design and application of formal discrete event wildfire spread and suppression models},
|
||||
volume = {88},
|
||||
issn = {0037-5497, 1741-3133},
|
||||
shorttitle = {{DEVS}-{FIRE}},
|
||||
url = {http://sim.sagepub.com/cgi/doi/10.1177/0037549711414592},
|
||||
doi = {10.1177/0037549711414592},
|
||||
number = {3},
|
||||
urldate = {2013-01-29},
|
||||
journal = {SIMULATION},
|
||||
author = {Hu, X. and Sun, Y. and Ntaimo, L.},
|
||||
month = oct,
|
||||
year = {2011},
|
||||
pages = {259--279}
|
||||
}
|
||||
|
||||
@article{karafyllidis_model_1997,
|
||||
title = {A model for predicting forest fire spreading using cellular automata},
|
||||
volume = {99},
|
||||
number = {1},
|
||||
journal = {Ecological Modelling},
|
||||
author = {Karafyllidis, Ioannis and Thanailakis, Adonios},
|
||||
year = {1997},
|
||||
pages = {87--97}
|
||||
}
|
||||
|
||||
@article{filippi_discrete_2010,
|
||||
title = {Discrete event front-tracking simulation of a physical fire-spread model},
|
||||
volume = {86},
|
||||
number = {10},
|
||||
journal = {Simulation},
|
||||
author = {Filippi, Jean-Baptiste and Morandini, Frédéric and Balbi, Jacques Henri and Hill, David RC},
|
||||
year = {2010},
|
||||
pages = {629--646}
|
||||
}
|
||||
|
||||
@book{toffoli_cellular_1987,
|
||||
address = {Cambridge},
|
||||
title = {Cellular automata machines: a new environment for modeling},
|
||||
publisher = {MIT press},
|
||||
author = {Toffoli, Tommaso and Margolus, Norman},
|
||||
year = {1987}
|
||||
}
|
||||
|
||||
@inproceedings{kubera_interaction-oriented_2008,
|
||||
title = {Interaction-{Oriented} {Agent} {Simulations}: {From} {Theory} to {Implementation}.},
|
||||
booktitle = {{ECAI}},
|
||||
author = {Kubera, Yoann and Mathieu, Philippe and Picault, Sébastien and {others}},
|
||||
year = {2008},
|
||||
pages = {383--387}
|
||||
}
|
||||
|
||||
@book{mamei_field-based_2006,
|
||||
title = {Field-based coordination for pervasive multiagent systems},
|
||||
publisher = {Springer Science \& Business Media},
|
||||
author = {Mamei, Marco and Zambonelli, Franco},
|
||||
year = {2006}
|
||||
}
|
||||
|
||||
@incollection{mamei_co-fields:_2003,
|
||||
title = {Co-fields: {Towards} a unifying approach to the engineering of swarm intelligent systems},
|
||||
booktitle = {Engineering {Societies} in the {Agents} {World} {III}},
|
||||
publisher = {Springer},
|
||||
author = {Mamei, Marco and Zambonelli, Franco and Leonardi, Letizia},
|
||||
year = {2003},
|
||||
pages = {68--81}
|
||||
}
|
||||
|
||||
@article{chopard_cellular_1998,
|
||||
title = {Cellular automata modeling of physical systems},
|
||||
journal = {Cellular automata modeling of physical systems},
|
||||
author = {Chopard, Bastien and Droz, Michel},
|
||||
year = {1998}
|
||||
}
|
||||
|
||||
@incollection{giavitto_computations_2005,
|
||||
title = {Computations in space and space in computations},
|
||||
booktitle = {Unconventional {Programming} {Paradigms}},
|
||||
publisher = {Springer},
|
||||
author = {Giavitto, Jean-Louis and Michel, Olivier and Cohen, Julien and Spicher, Antoine},
|
||||
year = {2005},
|
||||
pages = {137--152}
|
||||
}
|
||||
|
||||
@inproceedings{muzy_activity_2010,
|
||||
title = {Activity regions for the specification of discrete event systems},
|
||||
booktitle = {Proceedings of the 2010 {Spring} {Simulation} {Multiconference}},
|
||||
publisher = {Society for Computer Simulation International},
|
||||
author = {Muzy, Alexandre and Touraille, Luc and Vangheluwe, Hans and Michel, Olivier and Traoré, Mamadou Kaba and Hill, David RC},
|
||||
year = {2010},
|
||||
pages = {136}
|
||||
}
|
||||
|
||||
@article{shi_activity-based_1999,
|
||||
title = {Activity-based construction ({ABC}) modeling and simulation method},
|
||||
volume = {125},
|
||||
number = {5},
|
||||
journal = {Journal of construction engineering and management},
|
||||
author = {Shi, Jonathan Jingsheng},
|
||||
year = {1999},
|
||||
pages = {354--360}
|
||||
}
|
||||
|
||||
@inproceedings{potier_topological_2013,
|
||||
title = {Topological computation of activity regions},
|
||||
url = {http://doi.acm.org/10.1145/2486092.2486136},
|
||||
doi = {10.1145/2486092.2486136},
|
||||
booktitle = {{SIGSIM} {Principles} of {Advanced} {Discrete} {Simulation}, {SIGSIM}-{PADS} '13, {Montreal}, {QC}, {Canada}, {May} 19-22, 2013},
|
||||
author = {Potier, Martin and Spicher, Antoine and Michel, Olivier},
|
||||
year = {2013},
|
||||
pages = {337--342}
|
||||
}
|
||||
|
||||
@book{tocher_art_1967,
|
||||
title = {The {Art} of {Simulation}},
|
||||
isbn = {B0007ITI4E},
|
||||
publisher = {English Universities Press},
|
||||
author = {Tocher, K. D},
|
||||
year = {1967}
|
||||
}
|
||||
|
||||
@phdthesis{louail_comparer_2010,
|
||||
title = {Comparer les morphogénèses urbaines en {Europe} et aux États-{Unis} par la simulation à base d'agents–{Approches} multi-niveaux et environnements de simulation spatiale},
|
||||
school = {Université d'Evry-Val d'Essonne},
|
||||
author = {Louail, Thomas},
|
||||
year = {2010}
|
||||
}
|
||||
|
||||
@article{bretagnolle_theory_2006,
|
||||
title = {From theory to modelling: urban systems as complex systems},
|
||||
journal = {Cybergeo: European Journal of Geography},
|
||||
author = {Bretagnolle, Anne and Daudé, Eric and Pumain, Denise},
|
||||
year = {2006}
|
||||
}
|
||||
|
||||
@article{karr_whole-cell_2012,
|
||||
title = {A whole-cell computational model predicts phenotype from genotype},
|
||||
volume = {150},
|
||||
number = {2},
|
||||
journal = {Cell},
|
||||
author = {Karr, Jonathan R and Sanghvi, Jayodita C and Macklin, Derek N and Gutschow, Miriam V and Jacobs, Jared M and Bolival, Benjamin and Assad-Garcia, Nacyra and Glass, John I and Covert, Markus W},
|
||||
year = {2012},
|
||||
pages = {389--401}
|
||||
}
|
||||
|
||||
@article{lighthill_kinematic_1955,
|
||||
title = {On kinematic waves. {II}. {A} theory of traffic flow on long crowded roads},
|
||||
volume = {229},
|
||||
number = {1178},
|
||||
journal = {Proceedings of the Royal Society of London. Series A. Mathematical and Physical Sciences},
|
||||
author = {Lighthill, Michael J and Whitham, Gerald Beresford},
|
||||
year = {1955},
|
||||
pages = {317--345}
|
||||
}
|
||||
|
||||
@article{nagel_cellular_1992,
|
||||
title = {A cellular automaton model for freeway traffic},
|
||||
volume = {2},
|
||||
number = {12},
|
||||
journal = {Journal de physique I},
|
||||
author = {Nagel, Kai and Schreckenberg, Michael},
|
||||
year = {1992},
|
||||
pages = {2221--2229}
|
||||
}
|
||||
|
||||
@article{banos_simuler_2008,
|
||||
title = {Simuler les interactions piétons-automobilistes dans un environnement urbain : une approche à base d’agents},
|
||||
copyright = {© Tous droits réservés},
|
||||
issn = {1954-4863},
|
||||
shorttitle = {Simuler les interactions piétons-automobilistes dans un environnement urbain},
|
||||
url = {http://tem.revues.org/1048},
|
||||
abstract = {Afin d’explorer le rôle des interactions piétons-automobilistes dans l’avènement des accidents de la circulation en milieu urbain, un modèle à base d’agents - SAMU - a été développé. SAMU permet d’explorer des dynamiques complexes à partir de règles comportementales simples. Les principaux éléments de ce modèle sont exposés et discutés., An agent-based model - SAMU - has been designed, which allows exploring pedestrians-drivers interaction in a virtual urban environment. Complex dynamics are obtained from simple behaviours. The key elements of SAMU are presented and discussed.},
|
||||
language = {fr},
|
||||
number = {1},
|
||||
urldate = {2015-01-05},
|
||||
journal = {Territoire en mouvement Revue de géographie et aménagement. Territory in movement Journal of geography and planning},
|
||||
author = {Banos, Arnaud and Lassarre, Sylvain},
|
||||
month = dec,
|
||||
year = {2008},
|
||||
note = {Afin d’explorer le rôle des interactions piétons-automobilistes dans l’avènement des accidents de la circulation en milieu urbain, un modèle à base d’agents - SAMU - a été développé. SAMU permet d’explorer des dynamiques complexes à partir de règles comportementales simples. Les principaux éléments de ce modèle sont exposés et discutés.},
|
||||
keywords = {accidentologie, agent-based simulation, environnement urbain, multi-agents, risque routier, road safety, simulation, urban environment},
|
||||
pages = {58--66}
|
||||
}
|
||||
|
||||
@article{willems_paradigms_1991,
|
||||
title = {Paradigms and puzzles in the theory of dynamical systems},
|
||||
volume = {36},
|
||||
number = {3},
|
||||
journal = {Automatic Control, IEEE Transactions on},
|
||||
author = {Willems, Jan C},
|
||||
year = {1991},
|
||||
pages = {259--294}
|
||||
}
|
||||
|
||||
@article{kurtz_relationship_1972,
|
||||
title = {The relationship between stochastic and deterministic models for chemical reactions},
|
||||
volume = {57},
|
||||
number = {7},
|
||||
journal = {The Journal of Chemical Physics},
|
||||
author = {Kurtz, Thomas G},
|
||||
year = {1972},
|
||||
pages = {2976--2978}
|
||||
}
|
||||
|
||||
@article{gillespie_exact_1977,
|
||||
title = {Exact stochastic simulation of coupled chemical reactions},
|
||||
volume = {81},
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||||
number = {25},
|
||||
journal = {The journal of physical chemistry},
|
||||
author = {Gillespie, Daniel T},
|
||||
year = {1977},
|
||||
pages = {2340--2361}
|
||||
}
|
||||
|
||||
@book{mainzer_local_2013,
|
||||
title = {Local {Activity} {Principle}: {The} {Cause} of {Complexity} and {Symmetry} {Breaking}},
|
||||
isbn = {978-1-908977-09-0},
|
||||
publisher = {Imperial College Press},
|
||||
author = {Mainzer, Klaus and Chua, Leon O.},
|
||||
year = {2013},
|
||||
lccn = {2013427768}
|
||||
}
|
||||
|
||||
@incollection{abbott_model_1990,
|
||||
title = {Model {Neurons}: from {Hodgkin}-{Huxley} to {Hopfield}},
|
||||
booktitle = {Statistical mechanics of neural networks},
|
||||
publisher = {Springer},
|
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author = {Abbott, LF and Kepler, Thomas B},
|
||||
year = {1990},
|
||||
pages = {5--18}
|
||||
}
|
||||
|
||||
@article{burkitt_review_2006,
|
||||
title = {A review of the integrate-and-fire neuron model: {I}. {Homogeneous} synaptic input},
|
||||
volume = {95},
|
||||
number = {1},
|
||||
journal = {Biological cybernetics},
|
||||
author = {Burkitt, Anthony N},
|
||||
year = {2006},
|
||||
pages = {1--19}
|
||||
}
|
||||
|
||||
@article{hindmarsh_model_1984,
|
||||
title = {A model of neuronal bursting using three coupled first order differential equations},
|
||||
volume = {221},
|
||||
number = {1222},
|
||||
journal = {Proceedings of the Royal society of London. Series B. Biological sciences},
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||||
author = {Hindmarsh, JL and Rose, RM},
|
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year = {1984},
|
||||
pages = {87--102}
|
||||
}
|
||||
|
||||
@article{fitzhugh_impulses_1961,
|
||||
title = {Impulses and physiological states in theoretical models of nerve membrane},
|
||||
volume = {1},
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number = {6},
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journal = {Biophysical journal},
|
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author = {FitzHugh, Richard},
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year = {1961},
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pages = {445}
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||||
}
|
||||
|
||||
@article{stein_improved_1974,
|
||||
title = {Improved neuronal models for studying neural networks},
|
||||
volume = {15},
|
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number = {1},
|
||||
journal = {Kybernetik},
|
||||
author = {Stein, RB and Leung, KV and Mangeron, D and Oğuztöreli, MN},
|
||||
year = {1974},
|
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pages = {1--9}
|
||||
}
|
||||
|
||||
@article{abarbanel_synchronisation_1996,
|
||||
title = {Synchronisation in neural networks},
|
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volume = {39},
|
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number = {4},
|
||||
journal = {Physics-Uspekhi},
|
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author = {Abarbanel, HDI and Rabinovich, Mikhail Izrailevich and Selverston, A and Bazhenov, MV and Huerta, R and Sushchik, MM and Rubchinskii, LL},
|
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year = {1996},
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pages = {337--362}
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||||
}
|
||||
|
||||
@article{golomb_reduction_1993,
|
||||
title = {Reduction of a channel-based model for a stomatogastric ganglion {LP} neuron},
|
||||
volume = {69},
|
||||
number = {2},
|
||||
journal = {Biological cybernetics},
|
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author = {Golomb, David and Guckenheimer, John and Gueron, Shay},
|
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year = {1993},
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||||
pages = {129--137}
|
||||
}
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||||
|
||||
@article{morris_voltage_1981,
|
||||
title = {Voltage oscillations in the barnacle giant muscle fiber.},
|
||||
volume = {35},
|
||||
number = {1},
|
||||
journal = {Biophysical journal},
|
||||
author = {Morris, Catherine and Lecar, Harold},
|
||||
year = {1981},
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||||
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|
||||
}
|
||||
|
||||
@article{prusinkiewicz_introduction_2003,
|
||||
title = {Introduction to {Modeling} with {L}-systems},
|
||||
journal = {L-systems and Beyond-SIGGRAPH 2003 Course Notes},
|
||||
author = {Prusinkiewicz, Przemyslaw},
|
||||
year = {2003},
|
||||
pages = {1--26}
|
||||
}
|
||||
|
||||
@inproceedings{kovalevsky_algorithms_2001,
|
||||
title = {Algorithms and data structures for computer topology},
|
||||
booktitle = {Digital and image geometry},
|
||||
publisher = {Springer},
|
||||
author = {Kovalevsky, Vladimir},
|
||||
year = {2001},
|
||||
pages = {38--58}
|
||||
}
|
||||
|
||||
@incollection{polack_architecture_2005,
|
||||
title = {An architecture for modelling emergence in {CA}-like systems},
|
||||
booktitle = {Advances in {Artificial} {Life}},
|
||||
publisher = {Springer},
|
||||
author = {Polack, Fiona and Stepney, Susan and Turner, Heather and Welch, Peter and Barnes, Fred},
|
||||
year = {2005},
|
||||
pages = {433--442}
|
||||
}
|
||||
|
||||
@phdthesis{louail_comparer_2010-1,
|
||||
type = {Theses},
|
||||
title = {Comparer les morphogénèses urbaines en {Europe} et aux États-{Unis} par la simulation à base d'agents – {Approches} multi-niveaux et environnements de simulation spatiale},
|
||||
url = {https://tel.archives-ouvertes.fr/tel-00584495},
|
||||
school = {Université d'Evry-Val d'Essonne},
|
||||
author = {Louail, Thomas},
|
||||
month = dec,
|
||||
year = {2010},
|
||||
keywords = {agent based simulation, city, environnements de simulation, modélisation multi-niveaux, morphogenèses urbaines, multilevel modeling, simulation à base d'agents, simulation environements, urban morphogenesis, ville}
|
||||
}
|
||||
|
||||
@article{codd_relational_1970,
|
||||
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title = {Motions of {Swarming} {E} coli {Bacteria}},
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url = {https://www.youtube.com/watch?v=q27Jn3h4kpE&feature=youtube_gdata_player},
|
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abstract = {A dense group of E. coli swims in the roughly two dimensional space at an air water interface. Their collective motion is significantly different from their motion as single cells. Under these conditions they behave more like an active fluid, hence changing the way that nutrients are shared within the group. Notice the appearance of turbulence-like flow fields. Groups of cells form and swim together, other groups split and join, the average trajectory of a single cell can be quite erratic as shown by the cell labeled in red.
|
||||
|
||||
Video courtesy Matthew Copeland, University of Wisconsin, Madison.},
|
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urldate = {2015-01-05},
|
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collaborator = {{thesoundofscience}},
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month = feb,
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year = {2010}
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title = {Représentations dynamiques de l'espace dans un langage déclaratif de simulation},
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author = {Bremer, Hans and Dennis, Patrick P.},
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title = {Cell volume increase in {Escherichia} coli after shifts to richer media.},
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||||
title = {Bacteria article},
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url = {http://www.britannica.com/print/article/48203},
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urldate = {2016-01-30},
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author = {Britanica Online Encyclopedia},
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year = {2016}
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}
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title = {Changes in cell diameter during the division cycle of {Escherichia} coli.},
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}
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title = {Escherichia coli swim on the right-hand side},
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volume = {435},
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url = {http://dx.doi.org/10.1038/nature03660},
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number = {7046},
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year = {2005},
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pages = {1271--1274}
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}
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|
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title = {Chemotaxis in {Escherichia} coli analysed by three-dimensional tracking},
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volume = {239},
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journal = {Nature},
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}
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@article{bourgoin_spoc:_2012,
|
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title = {{SPOC}: {GPGPU} programming through stream processing with {OCaml}},
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volume = {22},
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number = {02},
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author = {Bourgoin, Mathias and Chailloux, Emmanuel and Lamotte, Jean-Luc},
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|
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}
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@incollection{medvedev_multi-particle_2010,
|
||||
title = {Multi-particle cellular-automata models for diffusion simulation},
|
||||
booktitle = {Methods and tools of parallel programming multicomputers},
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publisher = {Springer},
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author = {Medvedev, Yu},
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year = {2010},
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pages = {204--211}
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}
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||||
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|
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title = {The chemotactic behavior of computer-based surrogate bacteria},
|
||||
volume = {17},
|
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journal = {Current biology},
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author = {Bray, Dennis and Levin, Matthew D and Lipkow, Karen},
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year = {2007},
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pages = {12--19}
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}
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||||
@article{goeddel_expression_1979,
|
||||
title = {Expression in {Escherichia} coli of chemically synthesized genes for human insulin},
|
||||
volume = {76},
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number = {1},
|
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journal = {Proceedings of the National Academy of Sciences},
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author = {Goeddel, David V and Kleid, Dennis G and Bolivar, Francisco and Heyneker, Herbert L and Yansura, Daniel G and Crea, Roberto and Hirose, Tadaaki and Kraszewski, Adam and Itakura, Keiichi and Riggs, Arthur D},
|
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|
||||
}
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||||
|
||||
@article{darnton_torque_2007,
|
||||
title = {On torque and tumbling in swimming {Escherichia} coli},
|
||||
volume = {189},
|
||||
url = {http://jb.asm.org/content/189/5/1756.short},
|
||||
number = {5},
|
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urldate = {2016-02-05},
|
||||
journal = {Journal of bacteriology},
|
||||
author = {Darnton, Nicholas C. and Turner, Linda and Rojevsky, Svetlana and Berg, Howard C.},
|
||||
year = {2007},
|
||||
pages = {1756--1764},
|
||||
file = {[HTML] à partir de asm.org:/home/eeva/work/thesis/biblio/zotero/storage/CGEI8NH7/1756.html:text/html;Snapshot:/home/eeva/work/thesis/biblio/zotero/storage/JK49X6HH/1756.html:text/html}
|
||||
}
|
||||
|
||||
@article{turner_real-time_2000,
|
||||
title = {Real-{Time} {Imaging} of {Fluorescent} {Flagellar} {Filaments}},
|
||||
volume = {182},
|
||||
issn = {0021-9193, 1098-5530},
|
||||
url = {http://jb.asm.org/content/182/10/2793},
|
||||
doi = {10.1128/JB.182.10.2793-2801.2000},
|
||||
abstract = {Bacteria swim by rotating flagellar filaments that are several micrometers long, but only about 20 nm in diameter. The filaments can exist in different polymorphic forms, having distinct values of curvature and twist. Rotation rates are on the order of 100 Hz. In the past, the motion of individual filaments has been visualized by dark-field or differential-interference-contrast microscopy, methods hampered by intense scattering from the cell body or shallow depth of field, respectively. We have found a simple procedure for fluorescently labeling cells and filaments that allows recording their motion in real time with an inexpensive video camera and an ordinary fluorescence microscope with mercury-arc or strobed laser illumination. We report our initial findings with cells of Escherichia coli. Tumbles (events that enable swimming cells to alter course) are remarkably varied. Not every filament on a cell needs to change its direction of rotation: different filaments can change directions at different times, and a tumble can result from the change in direction of only one. Polymorphic transformations tend to occur in the sequence normal, semicoiled, curly 1, with changes in the direction of movement of the cell body correlated with transformations to the semicoiled form.},
|
||||
language = {en},
|
||||
number = {10},
|
||||
urldate = {2016-02-05},
|
||||
journal = {Journal of Bacteriology},
|
||||
author = {Turner, Linda and Ryu, William S. and Berg, Howard C.},
|
||||
month = may,
|
||||
year = {2000},
|
||||
pmid = {10781548},
|
||||
pages = {2793--2801},
|
||||
file = {Full Text PDF:/home/eeva/work/thesis/biblio/zotero/storage/MQ5R6TIB/Turner et al. - 2000 - Real-Time Imaging of Fluorescent Flagellar Filamen.pdf:application/pdf;Snapshot:/home/eeva/work/thesis/biblio/zotero/storage/NA5FUS4J/2793.html:text/html}
|
||||
}
|
||||
|
||||
@article{sourjik_receptor_2004,
|
||||
title = {Receptor clustering and signal processing in {E}. coli chemotaxis},
|
||||
volume = {12},
|
||||
url = {http://www.sciencedirect.com/science/article/pii/S0966842X04002343},
|
||||
number = {12},
|
||||
urldate = {2016-02-06},
|
||||
journal = {Trends in microbiology},
|
||||
author = {Sourjik, Victor},
|
||||
year = {2004},
|
||||
pages = {569--576},
|
||||
file = {[PDF] à partir de psu.edu:/home/eeva/work/thesis/biblio/zotero/storage/PEM88DQE/Sourjik - 2004 - Receptor clustering and signal processing in E. co.pdf:application/pdf;Snapshot:/home/eeva/work/thesis/biblio/zotero/storage/K65JZAUM/S0966-842X(04)00234-3.html:text/html}
|
||||
}
|
||||
|
||||
@article{shimizu_spatially_2003,
|
||||
title = {A {Spatially} {Extended} {Stochastic} {Model} of the {Bacterial} {Chemotaxis} {Signalling} {Pathway}},
|
||||
volume = {329},
|
||||
issn = {00222836},
|
||||
url = {http://linkinghub.elsevier.com/retrieve/pii/S0022283603004376},
|
||||
doi = {10.1016/S0022-2836(03)00437-6},
|
||||
language = {en},
|
||||
number = {2},
|
||||
urldate = {2016-02-06},
|
||||
journal = {Journal of Molecular Biology},
|
||||
author = {Shimizu, Thomas S. and Aksenov, Sergej V. and Bray, Dennis},
|
||||
month = may,
|
||||
year = {2003},
|
||||
pages = {291--309}
|
||||
}
|
||||
|
||||
@article{mello_quantitative_2003,
|
||||
title = {Quantitative modeling of sensitivity in bacterial chemotaxis: {The} role of coupling among different chemoreceptor species},
|
||||
volume = {100},
|
||||
issn = {0027-8424, 1091-6490},
|
||||
shorttitle = {Quantitative modeling of sensitivity in bacterial chemotaxis},
|
||||
url = {http://www.pnas.org/content/100/14/8223},
|
||||
doi = {10.1073/pnas.1330839100},
|
||||
abstract = {We propose a general theoretical framework for modeling receptor sensitivity in bacterial chemotaxis, taking into account receptor interactions, including those among different receptor species. We show that our model can quantitatively explain the recent in vivo measurements of receptor sensitivity at different ligand concentrations for both mutant and wild-type strains. For mutant strains, our model can fit the experimental data exactly. For the wild-type cell, our model is capable of achieving high gain while having modest values of Hill coefficient for the response curves. Furthermore, the high sensitivity of the wild-type cell in our model is maintained for a wide range of ambient ligand concentrations, facilitated by near-perfect adaptation and dependence of ligand binding on receptor activity. Our study reveals the importance of coupling among different chemoreceptor species, in particular strong interactions between the aspartate (Tar) and serine (Tsr) receptors, which is crucial in explaining both the mutant and wild-type data. Predictions for the sensitivity of other mutant strains and possible improvements of our model for the wild-type cell are also discussed.},
|
||||
language = {en},
|
||||
number = {14},
|
||||
urldate = {2016-02-06},
|
||||
journal = {Proceedings of the National Academy of Sciences},
|
||||
author = {Mello, Bernardo A. and Tu, Yuhai},
|
||||
month = jul,
|
||||
year = {2003},
|
||||
pmid = {12826616},
|
||||
pages = {8223--8228},
|
||||
file = {Full Text PDF:/home/eeva/work/thesis/biblio/zotero/storage/SNG3NCZX/Mello et Tu - 2003 - Quantitative modeling of sensitivity in bacterial .pdf:application/pdf;Snapshot:/home/eeva/work/thesis/biblio/zotero/storage/PIGH9TS7/8223.html:text/html}
|
||||
}
|
||||
|
||||
@article{stewart_aging_2005,
|
||||
title = {Aging and {Death} in an {Organism} {That} {Reproduces} by {Morphologically} {Symmetric} {Division}},
|
||||
volume = {3},
|
||||
url = {http://dx.doi.org/10.1371/journal.pbio.0030045},
|
||||
doi = {10.1371/journal.pbio.0030045},
|
||||
abstract = {Detailed time lapse photography reveals that organisms that divide symmetrically, such as the bacterium E. coli, can indeed age and consequently that no organism is immune to mortality.},
|
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number = {2},
|
||||
urldate = {2016-02-07},
|
||||
journal = {PLoS Biol},
|
||||
author = {Stewart, Eric J and Madden, Richard and Paul, Gregory and Taddei, François},
|
||||
month = feb,
|
||||
year = {2005},
|
||||
pages = {e45},
|
||||
file = {PLoS Full Text PDF:/home/eeva/work/thesis/biblio/zotero/storage/IP932H39/Stewart et al. - 2005 - Aging and Death in an Organism That Reproduces by .pdf:application/pdf}
|
||||
}
|
||||
|
||||
@incollection{hoekstra_complex_2010,
|
||||
title = {Complex automata: multi-scale modeling with coupled cellular automata},
|
||||
booktitle = {Simulating complex systems by cellular automata},
|
||||
publisher = {Springer},
|
||||
author = {Hoekstra, Alfons G and Caiazzo, Alfonso and Lorenz, Eric and Falcone, Jean-Luc and Chopard, Bastien},
|
||||
year = {2010},
|
||||
pages = {29--57}
|
||||
}
|
||||
|
||||
@article{bray_javascript_2014,
|
||||
title = {The javascript object notation (json) data interchange format},
|
||||
author = {Bray, Tim},
|
||||
year = {2014}
|
||||
}
|
||||
|
||||
@article{dilao_validation_1998,
|
||||
title = {Validation and calibration of models for reaction–diffusion systems},
|
||||
volume = {8},
|
||||
number = {06},
|
||||
journal = {International Journal of Bifurcation and Chaos},
|
||||
author = {Dilão, Rui and Sainhas, Joaquim},
|
||||
year = {1998},
|
||||
pages = {1163--1182}
|
||||
}
|
||||
1379
biblio/these2016.bib
Normal file
1379
biblio/these2016.bib
Normal file
File diff suppressed because it is too large
Load diff
BIN
biblio/zotero/locate/CrossRef Lookup.gif
Normal file
BIN
biblio/zotero/locate/CrossRef Lookup.gif
Normal file
Binary file not shown.
|
After Width: | Height: | Size: 590 B |
BIN
biblio/zotero/locate/Google Scholar Search.ico
Normal file
BIN
biblio/zotero/locate/Google Scholar Search.ico
Normal file
Binary file not shown.
|
After Width: | Height: | Size: 5.3 KiB |
31
biblio/zotero/locate/engines.json
Normal file
31
biblio/zotero/locate/engines.json
Normal file
|
|
@ -0,0 +1,31 @@
|
|||
[
|
||||
{
|
||||
"name": "CrossRef Lookup",
|
||||
"alias": "CrossRef",
|
||||
"icon": "file:///home/eeva/.mozilla/firefox/bmo4pesa.default/zotero/locate/CrossRef%20Lookup.gif",
|
||||
"_urlTemplate": "http://crossref.org/openurl?{z:openURL}&pid=zter:zter321",
|
||||
"description": "CrossRef Search Engine",
|
||||
"hidden": false,
|
||||
"_urlParams": [],
|
||||
"_urlNamespaces": {
|
||||
"z": "http://www.zotero.org/namespaces/openSearch#",
|
||||
"": "http://a9.com/-/spec/opensearch/1.1/"
|
||||
},
|
||||
"_iconSourceURI": "http://crossref.org/favicon.ico"
|
||||
},
|
||||
{
|
||||
"name": "Google Scholar Search",
|
||||
"alias": "Google Scholar",
|
||||
"icon": "file:///home/eeva/.mozilla/firefox/bmo4pesa.default/zotero/locate/Google%20Scholar%20Search.ico",
|
||||
"_urlTemplate": "http://scholar.google.com/scholar?as_q=&as_epq={z:title}&as_occt=title&as_sauthors={rft:aufirst?}+{rft:aulast?}&as_ylo={z:year?}&as_yhi={z:year?}&as_sdt=1.&as_sdtp=on&as_sdtf=&as_sdts=22&",
|
||||
"description": "Google Scholar Search",
|
||||
"hidden": false,
|
||||
"_urlParams": [],
|
||||
"_urlNamespaces": {
|
||||
"rft": "info:ofi/fmt:kev:mtx:journal",
|
||||
"z": "http://www.zotero.org/namespaces/openSearch#",
|
||||
"": "http://a9.com/-/spec/opensearch/1.1/"
|
||||
},
|
||||
"_iconSourceURI": "http://scholar.google.com/favicon.ico"
|
||||
}
|
||||
]
|
||||
BIN
biblio/zotero/zotero.sqlite
Normal file
BIN
biblio/zotero/zotero.sqlite
Normal file
Binary file not shown.
BIN
biblio/zotero/zotero.sqlite.1.bak
Normal file
BIN
biblio/zotero/zotero.sqlite.1.bak
Normal file
Binary file not shown.
BIN
biblio/zotero/zotero.sqlite.bak
Normal file
BIN
biblio/zotero/zotero.sqlite.bak
Normal file
Binary file not shown.
28
builderbot/Build.cabal
Normal file
28
builderbot/Build.cabal
Normal file
|
|
@ -0,0 +1,28 @@
|
|||
-- Initial Build.cabal generated by cabal init. For further documentation,
|
||||
-- see http://haskell.org/cabal/users-guide/
|
||||
|
||||
name: buildthesis
|
||||
version: 0.1.0.0
|
||||
-- synopsis:
|
||||
-- description:
|
||||
-- license:
|
||||
license-file: LICENSE
|
||||
author: eeva
|
||||
maintainer: eeva@canine
|
||||
-- copyright:
|
||||
-- category:
|
||||
build-type: Simple
|
||||
-- extra-source-files:
|
||||
cabal-version: >=1.10
|
||||
|
||||
executable buildthesis
|
||||
main-is: Build.hs
|
||||
-- other-modules:
|
||||
-- other-extensions:
|
||||
build-depends: base >=4.8
|
||||
,directory >=1.2
|
||||
,shake
|
||||
,Glob
|
||||
|
||||
-- hs-source-dirs:
|
||||
default-language: Haskell2010
|
||||
121
builderbot/Build.hs
Normal file
121
builderbot/Build.hs
Normal file
|
|
@ -0,0 +1,121 @@
|
|||
import System.IO
|
||||
import Development.Shake
|
||||
import Development.Shake.FilePath
|
||||
import System.Directory (createDirectory)
|
||||
import System.FilePath.Glob
|
||||
import Data.List (isSuffixOf)
|
||||
|
||||
target :: FilePath
|
||||
target = "main"
|
||||
|
||||
finalTarget :: FilePath
|
||||
finalTarget = "potier.these.2015" <.> "pdf"
|
||||
|
||||
buildDir :: FilePath
|
||||
buildDir = "_build"
|
||||
|
||||
fullTarget :: FilePath
|
||||
fullTarget = buildDir </> target <.> "pdf"
|
||||
|
||||
sanityFile :: FilePath
|
||||
sanityFile = buildDir </> "sanity.check"
|
||||
|
||||
texCmd :: String -> [String]
|
||||
texCmd target = ["xelatex", "-halt-on-error", target]
|
||||
|
||||
foldersource :: FilePath -> [FilePattern] -> Action [FilePath]
|
||||
foldersource folder wildcards = do
|
||||
files <- getDirectoryFiles folder wildcards
|
||||
return $ map (folder </>) files
|
||||
|
||||
foldersourceIO :: FilePath -> [String] -> IO [FilePath]
|
||||
foldersourceIO folder wildcards = do
|
||||
let patterns = map compile wildcards
|
||||
(results,_) <- globDir patterns folder
|
||||
return $ concat results
|
||||
|
||||
allfiles :: Action [FilePath]
|
||||
allfiles = do
|
||||
tex <- getDirectoryFiles "" ["*.tex"]
|
||||
bib <- foldersource "biblio" ["*"]
|
||||
dots <- foldersource "data" ["*"]
|
||||
figures <- foldersource "figures" ["*"]
|
||||
fonts <- foldersource "fonts" ["*"]
|
||||
let files = tex ++ bib ++ dots ++ figures ++ fonts
|
||||
return $ map (buildDir </>) files
|
||||
|
||||
-- Without link
|
||||
compiledTikzFiguresIO :: IO [FilePath]
|
||||
compiledTikzFiguresIO = do
|
||||
tikz <- foldersourceIO "figures" ["*.tikz"]
|
||||
let pdfs = map (-<.> "pdf") tikz
|
||||
return $ map (buildDir </>) $ filter (not . isSuffixOf "link.pdf") pdfs
|
||||
|
||||
main :: IO ()
|
||||
main = do
|
||||
-- preping
|
||||
compiledTikzFigures <- compiledTikzFiguresIO
|
||||
|
||||
shakeArgs shakeOptions { shakeFiles = buildDir
|
||||
, shakeThreads = 0
|
||||
, shakeProgress = progressSimple } $ do
|
||||
want [ finalTarget ]
|
||||
|
||||
-- Populate when needed
|
||||
(map (buildDir </>) ["*.tex", "biblio/*", "data/*", "figures/*", "fonts/*"]) |%> \out -> do
|
||||
copyFile' (dropDirectory1 out) out
|
||||
|
||||
-- creating a sanity file (erk!)
|
||||
sanityFile %> \out -> do
|
||||
writeFile' sanityFile "building sanely"
|
||||
|
||||
-- Turn *.tikz in *.pdf
|
||||
compiledTikzFigures |%> \out -> do
|
||||
let source = out -<.> "tikz"
|
||||
need [source]
|
||||
cmd (EchoStdout False) [ "xelatex", "-halt-on-error",
|
||||
"-output-directory=" ++ (buildDir </> "figures"), source]
|
||||
|
||||
-- Build link.pdf
|
||||
buildDir </> "figures/link.pdf" %> \out -> do
|
||||
let source = out -<.> "tikz"
|
||||
need $ source : map (buildDir </>)
|
||||
[ "common-headers.tex", "sigles.tex",
|
||||
"figures/operateursS.pdf", "figures/operateursStS.pdf",
|
||||
"figures/operateursfS.pdf", "figures/operateursfStS.pdf",
|
||||
"figures/operateursStfS.pdf", "figures/operateursLkS.pdf" ]
|
||||
|
||||
cmd (Cwd buildDir) (EchoStdout False)
|
||||
[ "xelatex", "-halt-on-error",
|
||||
"-output-directory=figures", (dropDirectory1 source)]
|
||||
|
||||
|
||||
fullTarget %> \out -> do
|
||||
removeFilesAfter sanityFile ["*"]
|
||||
allSrc <- allfiles
|
||||
need $ sanityFile : (out -<.> "bbl")
|
||||
: (buildDir </> "figures/link.pdf")
|
||||
: compiledTikzFigures ++ allSrc
|
||||
cmd (Cwd buildDir) (EchoStdout False) $ texCmd target
|
||||
|
||||
-- generate "main.bbl"
|
||||
fullTarget -<.> "bbl" %> \out -> do
|
||||
allSrc <- allfiles
|
||||
need $ (buildDir </> "figures/link.pdf") : compiledTikzFigures ++ allSrc
|
||||
|
||||
existsAux <- doesFileExist $ fullTarget -<.> "aux"
|
||||
existsSane <- doesFileExist $ sanityFile
|
||||
if (not existsAux || existsSane)
|
||||
then cmd (Cwd buildDir) (EchoStdout False) $ texCmd target
|
||||
else return ()
|
||||
|
||||
cmd (EchoStdout False) ["biber", dropExtension out]
|
||||
|
||||
finalTarget %> \out -> do
|
||||
need [fullTarget]
|
||||
|
||||
copyFileChanged fullTarget out
|
||||
|
||||
phony "clean" $ do
|
||||
removeFilesAfter "_build" ["//*"]
|
||||
|
||||
1
builderbot/LICENSE
Normal file
1
builderbot/LICENSE
Normal file
|
|
@ -0,0 +1 @@
|
|||
dummy text
|
||||
24
builderbot/default.nix
Normal file
24
builderbot/default.nix
Normal file
|
|
@ -0,0 +1,24 @@
|
|||
{ nixpkgs ? import <nixpkgs> {}, compiler ? "default" }:
|
||||
|
||||
let
|
||||
|
||||
inherit (nixpkgs) pkgs;
|
||||
|
||||
f = { mkDerivation, base, directory, Glob, shake, stdenv }:
|
||||
mkDerivation {
|
||||
pname = "buildthesis";
|
||||
version = "0.1.0.0";
|
||||
src = ./.;
|
||||
isLibrary = false;
|
||||
isExecutable = true;
|
||||
executableHaskellDepends = [ base directory Glob shake ];
|
||||
license = stdenv.lib.licenses.publicDomain;
|
||||
};
|
||||
|
||||
haskellPackages = if compiler == "default"
|
||||
then pkgs.haskellPackages
|
||||
else pkgs.haskell.packages.${compiler};
|
||||
|
||||
in
|
||||
haskellPackages.callPackage f {}
|
||||
|
||||
139
common-headers.tex
Normal file
139
common-headers.tex
Normal file
|
|
@ -0,0 +1,139 @@
|
|||
% All packages and parameters usefull
|
||||
% for generating standalone figures.
|
||||
|
||||
\usepackage{xspace}
|
||||
|
||||
\usepackage{polyglossia}
|
||||
\setmainlanguage{french}
|
||||
\setotherlanguage{english}
|
||||
|
||||
% Do this BEFORE unicode-math
|
||||
\usepackage{amsfonts}
|
||||
\usepackage{amsmath}
|
||||
\usepackage{mathrsfs}
|
||||
\usepackage{amssymb}
|
||||
|
||||
% Do this AFTER any math font package (see fontspec doc)
|
||||
\usepackage{fontspec}
|
||||
\usepackage{unicode-math}
|
||||
\defaultfontfeatures{Scale=MatchLowercase,Mapping=tex-text}
|
||||
%\setromanfont{Linux Libertine O}
|
||||
\setromanfont{LinLibertine}[
|
||||
Path = fonts/ ,
|
||||
Extension = .otf ,
|
||||
UprightFont = *-R ,
|
||||
BoldFont = *-RB ,
|
||||
ItalicFont = *-RI ,
|
||||
BoldItalicFont = *-RBI ]
|
||||
%\setsansfont {Linux Biolinum O}
|
||||
\setsansfont{LinBiolinum}[
|
||||
Path = fonts/ ,
|
||||
Extension = .otf ,
|
||||
UprightFont = *-R ,
|
||||
BoldFont = *-RB ,
|
||||
ItalicFont = *-RI ]
|
||||
|
||||
%\setmonofont {Fantasque Sans Mono}
|
||||
\setmonofont{FantasqueSansMono}[
|
||||
Path = fonts/ ,
|
||||
Extension = .ttf ,
|
||||
UprightFont = *-Regular ,
|
||||
BoldFont = *-Bold ,
|
||||
ItalicFont = *-Italic ,
|
||||
BoldItalicFont = *-BoldItalic ]
|
||||
|
||||
%\setmathfont[mathbf=sym] {Asana Math}
|
||||
\setmathfont[mathbf=sym] {Asana-Math}[
|
||||
Path = fonts/ ,
|
||||
Extension = .otf ]
|
||||
|
||||
\usepackage{tikz}
|
||||
\usetikzlibrary{arrows.meta}
|
||||
\usetikzlibrary{backgrounds}
|
||||
\usetikzlibrary{bending}
|
||||
\usetikzlibrary{calc}
|
||||
\usetikzlibrary{decorations.pathreplacing}
|
||||
\usetikzlibrary{decorations.text}
|
||||
\usetikzlibrary{positioning}
|
||||
\usetikzlibrary{fit}
|
||||
\usetikzlibrary{shapes.geometric}
|
||||
|
||||
\usepackage{pgfplots}
|
||||
\pgfplotsset{compat=1.13}
|
||||
|
||||
\usepackage[
|
||||
locale = FR % Gives comma as decimal separator.
|
||||
]{siunitx}
|
||||
|
||||
% SOLARIZED HEX 16/8 TERMCOL XTERM/HEX L*A*B RGB HSB
|
||||
% --------- ------- ---- ------- ----------- ---------- ----------- -----------
|
||||
% base03 #002b36 8/4 brblack 234 #1c1c1c 15 -12 -12 0 43 54 193 100 21
|
||||
% base02 #073642 0/4 black 235 #262626 20 -12 -12 7 54 66 192 90 26
|
||||
% base01 #586e75 10/7 brgreen 240 #585858 45 -07 -07 88 110 117 194 25 46
|
||||
% base00 #657b83 11/7 bryellow 241 #626262 50 -07 -07 101 123 131 195 23 51
|
||||
% base0 #839496 12/6 brblue 244 #808080 60 -06 -03 131 148 150 186 13 59
|
||||
% base1 #93a1a1 14/4 brcyan 245 #8a8a8a 65 -05 -02 147 161 161 180 9 63
|
||||
% base2 #eee8d5 7/7 white 254 #e4e4e4 92 -00 10 238 232 213 44 11 93
|
||||
% base3 #fdf6e3 15/7 brwhite 230 #ffffd7 97 00 10 253 246 227 44 10 99
|
||||
% yellow #b58900 3/3 yellow 136 #af8700 60 10 65 181 137 0 45 100 71
|
||||
% orange #cb4b16 9/3 brred 166 #d75f00 50 50 55 203 75 22 18 89 80
|
||||
% red #dc322f 1/1 red 160 #d70000 50 65 45 220 50 47 1 79 86
|
||||
% magenta #d33682 5/5 magenta 125 #af005f 50 65 -05 211 54 130 331 74 83
|
||||
% violet #6c71c4 13/5 brmagenta 61 #5f5faf 50 15 -45 108 113 196 237 45 77
|
||||
% blue #268bd2 4/4 blue 33 #0087ff 55 -10 -45 38 139 210 205 82 82
|
||||
% cyan #2aa198 6/6 cyan 37 #00afaf 60 -35 -05 42 161 152 175 74 63
|
||||
% green #859900 2/2 green 64 #5f8700 60 -20 65 133 153 0 68 100 60
|
||||
\definecolor{base03} {HTML}{002b36} \colorlet{unused1} {base03}
|
||||
\definecolor{base02} {HTML}{073642} \colorlet{unused2} {base02}
|
||||
\definecolor{base01} {HTML}{586e75} \colorlet{fghl} {base01}
|
||||
\definecolor{base00} {HTML}{657b83} \colorlet{fg} {base00}
|
||||
\definecolor{base0 } {HTML}{839496} \colorlet{unused3} {base0 }
|
||||
\definecolor{base1 } {HTML}{93a1a1} \colorlet{bgcomment}{base1 }
|
||||
\definecolor{base2 } {HTML}{eee8d5} \colorlet{bghl} {base2 }
|
||||
\definecolor{base3 } {HTML}{fdf6e3} \colorlet{bg} {base3 }
|
||||
\definecolor{yellow} {HTML}{b58900}
|
||||
\definecolor{orange} {HTML}{cb4b16}
|
||||
\definecolor{red} {HTML}{dc322f}
|
||||
\definecolor{magenta}{HTML}{d33682}
|
||||
\definecolor{violet} {HTML}{6c71c4}
|
||||
\definecolor{blue} {HTML}{268bd2}
|
||||
\definecolor{cyan} {HTML}{2aa198}
|
||||
\definecolor{green} {HTML}{859900}
|
||||
|
||||
%Theme SMYCK
|
||||
% 0x00 (dark black ) #000000
|
||||
% 0x01 (dark red ) #C75646
|
||||
% 0x02 (dark green ) #8EB33B
|
||||
% 0x03 (dark yellow ) #D0B03C
|
||||
% 0x04 (dark blue ) #72B3CC
|
||||
% 0x05 (dark magenta) #C8A0D1
|
||||
% 0x06 (dark cyan ) #218693
|
||||
% 0x07 (dark white ) #B0B0B0
|
||||
% 0x10 (light black ) #5D5D5D
|
||||
% 0x11 (light red ) #E09690
|
||||
% 0x12 (light green ) #CDEE69
|
||||
% 0x13 (light yellow ) #FFE377
|
||||
% 0x14 (light blue ) #9CD9F0
|
||||
% 0x15 (light magenta) #FBB1F9
|
||||
% 0x16 (light cyan ) #77DFD8
|
||||
% 0x17 (light white ) #F7F7F7
|
||||
%\definecolor{ darkblack }{HTML}{#000000}
|
||||
%\definecolor{ darkred }{HTML}{#C75646}
|
||||
%\definecolor{ darkgreen }{HTML}{#8EB33B}
|
||||
%\definecolor{ darkyellow }{HTML}{#D0B03C}
|
||||
%\definecolor{ darkblue }{HTML}{#72B3CC}
|
||||
%\definecolor{ darkmagenta}{HTML}{#C8A0D1}
|
||||
%\definecolor{ darkcyan }{HTML}{#218693}
|
||||
%\definecolor{ darkwhite }{HTML}{#B0B0B0}
|
||||
%\definecolor{lightblack }{HTML}{#5D5D5D}
|
||||
%\definecolor{lightred }{HTML}{#E09690}
|
||||
%\definecolor{lightgreen }{HTML}{#CDEE69}
|
||||
%\definecolor{lightyellow }{HTML}{#FFE377}
|
||||
%\definecolor{lightblue }{HTML}{#9CD9F0}
|
||||
%\definecolor{lightmagenta}{HTML}{#FBB1F9}
|
||||
%\definecolor{lightcyan }{HTML}{#77DFD8}
|
||||
%\definecolor{lightwhite }{HTML}{#F7F7F7}
|
||||
|
||||
%NoUglyEmptySet
|
||||
%\let\oldemptyset\emptyset
|
||||
\let\emptyset\varnothing
|
||||
107
data/bench.tex
Normal file
107
data/bench.tex
Normal file
|
|
@ -0,0 +1,107 @@
|
|||
% GNUPLOT: LaTeX picture with Postscript
|
||||
\begingroup
|
||||
\makeatletter
|
||||
\providecommand\color[2][]{%
|
||||
\GenericError{(gnuplot) \space\space\space\@spaces}{%
|
||||
Package color not loaded in conjunction with
|
||||
terminal option `colourtext'%
|
||||
}{See the gnuplot documentation for explanation.%
|
||||
}{Either use 'blacktext' in gnuplot or load the package
|
||||
color.sty in LaTeX.}%
|
||||
\renewcommand\color[2][]{}%
|
||||
}%
|
||||
\providecommand\includegraphics[2][]{%
|
||||
\GenericError{(gnuplot) \space\space\space\@spaces}{%
|
||||
Package graphicx or graphics not loaded%
|
||||
}{See the gnuplot documentation for explanation.%
|
||||
}{The gnuplot epslatex terminal needs graphicx.sty or graphics.sty.}%
|
||||
\renewcommand\includegraphics[2][]{}%
|
||||
}%
|
||||
\providecommand\rotatebox[2]{#2}%
|
||||
\@ifundefined{ifGPcolor}{%
|
||||
\newif\ifGPcolor
|
||||
\GPcolorfalse
|
||||
}{}%
|
||||
\@ifundefined{ifGPblacktext}{%
|
||||
\newif\ifGPblacktext
|
||||
\GPblacktexttrue
|
||||
}{}%
|
||||
% define a \g@addto@macro without @ in the name:
|
||||
\let\gplgaddtomacro\g@addto@macro
|
||||
% define empty templates for all commands taking text:
|
||||
\gdef\gplbacktext{}%
|
||||
\gdef\gplfronttext{}%
|
||||
\makeatother
|
||||
\ifGPblacktext
|
||||
% no textcolor at all
|
||||
\def\colorrgb#1{}%
|
||||
\def\colorgray#1{}%
|
||||
\else
|
||||
% gray or color?
|
||||
\ifGPcolor
|
||||
\def\colorrgb#1{\color[rgb]{#1}}%
|
||||
\def\colorgray#1{\color[gray]{#1}}%
|
||||
\expandafter\def\csname LTw\endcsname{\color{white}}%
|
||||
\expandafter\def\csname LTb\endcsname{\color{black}}%
|
||||
\expandafter\def\csname LTa\endcsname{\color{black}}%
|
||||
\expandafter\def\csname LT0\endcsname{\color[rgb]{1,0,0}}%
|
||||
\expandafter\def\csname LT1\endcsname{\color[rgb]{0,1,0}}%
|
||||
\expandafter\def\csname LT2\endcsname{\color[rgb]{0,0,1}}%
|
||||
\expandafter\def\csname LT3\endcsname{\color[rgb]{1,0,1}}%
|
||||
\expandafter\def\csname LT4\endcsname{\color[rgb]{0,1,1}}%
|
||||
\expandafter\def\csname LT5\endcsname{\color[rgb]{1,1,0}}%
|
||||
\expandafter\def\csname LT6\endcsname{\color[rgb]{0,0,0}}%
|
||||
\expandafter\def\csname LT7\endcsname{\color[rgb]{1,0.3,0}}%
|
||||
\expandafter\def\csname LT8\endcsname{\color[rgb]{0.5,0.5,0.5}}%
|
||||
\else
|
||||
% gray
|
||||
\def\colorrgb#1{\color{black}}%
|
||||
\def\colorgray#1{\color[gray]{#1}}%
|
||||
\expandafter\def\csname LTw\endcsname{\color{white}}%
|
||||
\expandafter\def\csname LTb\endcsname{\color{black}}%
|
||||
\expandafter\def\csname LTa\endcsname{\color{black}}%
|
||||
\expandafter\def\csname LT0\endcsname{\color{black}}%
|
||||
\expandafter\def\csname LT1\endcsname{\color{black}}%
|
||||
\expandafter\def\csname LT2\endcsname{\color{black}}%
|
||||
\expandafter\def\csname LT3\endcsname{\color{black}}%
|
||||
\expandafter\def\csname LT4\endcsname{\color{black}}%
|
||||
\expandafter\def\csname LT5\endcsname{\color{black}}%
|
||||
\expandafter\def\csname LT6\endcsname{\color{black}}%
|
||||
\expandafter\def\csname LT7\endcsname{\color{black}}%
|
||||
\expandafter\def\csname LT8\endcsname{\color{black}}%
|
||||
\fi
|
||||
\fi
|
||||
\setlength{\unitlength}{0.0500bp}%
|
||||
\begin{picture}(6800.00,5100.00)%
|
||||
\gplgaddtomacro\gplbacktext{%
|
||||
\csname LTb\endcsname%
|
||||
\put(561,595){\makebox(0,0)[r]{\strut{} 0}}%
|
||||
\put(561,1455){\makebox(0,0)[r]{\strut{} 0.2}}%
|
||||
\put(561,2315){\makebox(0,0)[r]{\strut{} 0.4}}%
|
||||
\put(561,3175){\makebox(0,0)[r]{\strut{} 0.6}}%
|
||||
\put(561,4035){\makebox(0,0)[r]{\strut{} 0.8}}%
|
||||
\put(561,4895){\makebox(0,0)[r]{\strut{} 1}}%
|
||||
\put(663,409){\makebox(0,0){\strut{} 0}}%
|
||||
\put(1311,409){\makebox(0,0){\strut{} 100}}%
|
||||
\put(1959,409){\makebox(0,0){\strut{} 200}}%
|
||||
\put(2606,409){\makebox(0,0){\strut{} 300}}%
|
||||
\put(3254,409){\makebox(0,0){\strut{} 400}}%
|
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\put(3902,409){\makebox(0,0){\strut{} 500}}%
|
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\put(4550,409){\makebox(0,0){\strut{} 600}}%
|
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\put(5197,409){\makebox(0,0){\strut{} 700}}%
|
||||
\put(5845,409){\makebox(0,0){\strut{} 800}}%
|
||||
\put(6493,409){\makebox(0,0){\strut{} 900}}%
|
||||
\put(144,2745){\rotatebox{-270}{\makebox(0,0)[c]{}}}%
|
||||
\put(3578,130){\makebox(0,0)[c]{Iterations}}%
|
||||
}%
|
||||
\gplgaddtomacro\gplfronttext{%
|
||||
\csname LTb\endcsname%
|
||||
\put(5705,4728){\makebox(0,0)[r]{$T_{opt}/T_{norm}$}}%
|
||||
\csname LTb\endcsname%
|
||||
\put(5705,4542){\makebox(0,0)[r]{Active$/100^2$}}%
|
||||
}%
|
||||
\gplbacktext
|
||||
\put(0,0){\includegraphics{bench}}%
|
||||
\gplfronttext
|
||||
\end{picture}%
|
||||
\endgroup
|
||||
41
data/deviceQuery-GTX970strix.txt
Normal file
41
data/deviceQuery-GTX970strix.txt
Normal file
|
|
@ -0,0 +1,41 @@
|
|||
./deviceQuery Starting...
|
||||
|
||||
CUDA Device Query (Runtime API) version (CUDART static linking)
|
||||
|
||||
Detected 1 CUDA Capable device(s)
|
||||
|
||||
Device 0: "GeForce GTX 970"
|
||||
CUDA Driver Version / Runtime Version 8.0 / 7.5
|
||||
CUDA Capability Major/Minor version number: 5.2
|
||||
Total amount of global memory: 4093 MBytes (4291493888 bytes)
|
||||
(13) Multiprocessors, (128) CUDA Cores/MP: 1664 CUDA Cores
|
||||
GPU Max Clock rate: 1253 MHz (1.25 GHz)
|
||||
Memory Clock rate: 3505 Mhz
|
||||
Memory Bus Width: 256-bit
|
||||
L2 Cache Size: 1835008 bytes
|
||||
Maximum Texture Dimension Size (x,y,z) 1D=(65536), 2D=(65536, 65536), 3D=(4096, 4096, 4096)
|
||||
Maximum Layered 1D Texture Size, (num) layers 1D=(16384), 2048 layers
|
||||
Maximum Layered 2D Texture Size, (num) layers 2D=(16384, 16384), 2048 layers
|
||||
Total amount of constant memory: 65536 bytes
|
||||
Total amount of shared memory per block: 49152 bytes
|
||||
Total number of registers available per block: 65536
|
||||
Warp size: 32
|
||||
Maximum number of threads per multiprocessor: 2048
|
||||
Maximum number of threads per block: 1024
|
||||
Max dimension size of a thread block (x,y,z): (1024, 1024, 64)
|
||||
Max dimension size of a grid size (x,y,z): (2147483647, 65535, 65535)
|
||||
Maximum memory pitch: 2147483647 bytes
|
||||
Texture alignment: 512 bytes
|
||||
Concurrent copy and kernel execution: Yes with 2 copy engine(s)
|
||||
Run time limit on kernels: Yes
|
||||
Integrated GPU sharing Host Memory: No
|
||||
Support host page-locked memory mapping: Yes
|
||||
Alignment requirement for Surfaces: Yes
|
||||
Device has ECC support: Disabled
|
||||
Device supports Unified Addressing (UVA): Yes
|
||||
Device PCI Domain ID / Bus ID / location ID: 0 / 1 / 0
|
||||
Compute Mode:
|
||||
< Default (multiple host threads can use ::cudaSetDevice() with device simultaneously) >
|
||||
|
||||
deviceQuery, CUDA Driver = CUDART, CUDA Driver Version = 8.0, CUDA Runtime Version = 7.5, NumDevs = 1, Device0 = GeForce GTX 970
|
||||
Result = PASS
|
||||
41
data/deviceQuery-marvin-tesla.txt
Normal file
41
data/deviceQuery-marvin-tesla.txt
Normal file
|
|
@ -0,0 +1,41 @@
|
|||
./deviceQuery Starting...
|
||||
|
||||
CUDA Device Query (Runtime API) version (CUDART static linking)
|
||||
|
||||
Detected 1 CUDA Capable device(s)
|
||||
|
||||
Device 0: "Tesla K20m"
|
||||
CUDA Driver Version / Runtime Version 6.5 / 6.5
|
||||
CUDA Capability Major/Minor version number: 3.5
|
||||
Total amount of global memory: 4800 MBytes (5032706048 bytes)
|
||||
(13) Multiprocessors, (192) CUDA Cores/MP: 2496 CUDA Cores
|
||||
GPU Clock rate: 706 MHz (0.71 GHz)
|
||||
Memory Clock rate: 2600 Mhz
|
||||
Memory Bus Width: 320-bit
|
||||
L2 Cache Size: 1310720 bytes
|
||||
Maximum Texture Dimension Size (x,y,z) 1D=(65536), 2D=(65536, 65536), 3D=(4096, 4096, 4096)
|
||||
Maximum Layered 1D Texture Size, (num) layers 1D=(16384), 2048 layers
|
||||
Maximum Layered 2D Texture Size, (num) layers 2D=(16384, 16384), 2048 layers
|
||||
Total amount of constant memory: 65536 bytes
|
||||
Total amount of shared memory per block: 49152 bytes
|
||||
Total number of registers available per block: 65536
|
||||
Warp size: 32
|
||||
Maximum number of threads per multiprocessor: 2048
|
||||
Maximum number of threads per block: 1024
|
||||
Max dimension size of a thread block (x,y,z): (1024, 1024, 64)
|
||||
Max dimension size of a grid size (x,y,z): (2147483647, 65535, 65535)
|
||||
Maximum memory pitch: 2147483647 bytes
|
||||
Texture alignment: 512 bytes
|
||||
Concurrent copy and kernel execution: Yes with 2 copy engine(s)
|
||||
Run time limit on kernels: No
|
||||
Integrated GPU sharing Host Memory: No
|
||||
Support host page-locked memory mapping: Yes
|
||||
Alignment requirement for Surfaces: Yes
|
||||
Device has ECC support: Enabled
|
||||
Device supports Unified Addressing (UVA): Yes
|
||||
Device PCI Bus ID / PCI location ID: 5 / 0
|
||||
Compute Mode:
|
||||
< Default (multiple host threads can use ::cudaSetDevice() with device simultaneously) >
|
||||
|
||||
deviceQuery, CUDA Driver = CUDART, CUDA Driver Version = 6.5, CUDA Runtime Version = 6.5, NumDevs = 1, Device0 = Tesla K20m
|
||||
Result = PASS
|
||||
BIN
data/fullStablePopulation.data.gz
Normal file
BIN
data/fullStablePopulation.data.gz
Normal file
Binary file not shown.
33
data/moduleTree.gv
Normal file
33
data/moduleTree.gv
Normal file
|
|
@ -0,0 +1,33 @@
|
|||
digraph G {
|
||||
size="10,7.5";
|
||||
ratio="fill";
|
||||
rotate=90;
|
||||
fontsize="12pt";
|
||||
rankdir = TB ;
|
||||
"Bacterium" [style=filled, color=darkturquoise];
|
||||
"Bacterium" -> "Viewer";
|
||||
"Bacterium" -> "Packfile";
|
||||
"Bacterium" -> "OpenCL";
|
||||
"Bacterium" -> "BoundingBox";
|
||||
"BoundingBox" [style=filled, color=darkturquoise];
|
||||
"Coupling" [style=filled, color=darkturquoise];
|
||||
"Coupling" -> "OpenCL";
|
||||
"Main" [style=filled, color=darkturquoise];
|
||||
"Main" -> "Zone";
|
||||
"Main" -> "Viewer";
|
||||
"Main" -> "Morphogen";
|
||||
"Main" -> "Coupling";
|
||||
"Main" -> "BoundingBox";
|
||||
"Main" -> "Bacterium";
|
||||
"Morphogen" [style=filled, color=darkturquoise];
|
||||
"Morphogen" -> "Viewer";
|
||||
"Morphogen" -> "Packfile";
|
||||
"Morphogen" -> "OpenCL";
|
||||
"Morphogen" -> "BoundingBox";
|
||||
"OpenCL" [style=filled, color=darkturquoise];
|
||||
"Packfile" [style=filled, color=darkturquoise];
|
||||
"Viewer" [style=filled, color=darkturquoise];
|
||||
"Zone" [style=filled, color=darkturquoise];
|
||||
"Zone" -> "OpenCL";
|
||||
"Zone" -> "BoundingBox";
|
||||
}
|
||||
987
data/speedup2.data
Normal file
987
data/speedup2.data
Normal file
|
|
@ -0,0 +1,987 @@
|
|||
ITER NON OPT ACTIVE NONITER OPTITER NONITERNORM OPTITERNORM ACTIVENORM
|
||||
0 9.553332 10.039998 8 11.3473051258883 0 1 0 3.2E-05
|
||||
1 21.873331 10.043332 25 12.319999 0.003334 1.02 0.00029381425484 0.0001
|
||||
2 34.793329 10.043332 49 12.919998 0 1.02 0 0.000196
|
||||
3 49.443328 10.046665 81 14.649999 0.003333 1.02 0.00029372612819 0.000324
|
||||
4 63.409993 10.053332 121 13.966665 0.006667 1.02 0.00058754038303 0.000484
|
||||
5 75.409992 10.059998 169 11.999999 0.006666 1.02 0.00058745225638 0.000676
|
||||
6 87.969991 10.069998 225 12.559999 0.01 1.02 0.00088126651122 0.0009
|
||||
7 99.986656 10.079998 289 12.016665 0.01 1.02 0.00088126651122 0.001156
|
||||
8 112.086655 10.096665 361 12.099999 0.016667 1.02 0.00146880689424 0.001444
|
||||
9 123.80332 10.113332 441 11.716665 0.016667 1.03255044876417 0.00146880689424 0.001764
|
||||
10 135.426653 10.136665 525 11.623333 0.023333 1.02432541216169 0.00205625915062 0.0021
|
||||
11 147.013318 10.163332 613 11.586665 0.026667 1.02109398411836 0.00235007340546 0.002452
|
||||
12 158.623317 10.196665 707 11.609999 0.033333 1.02315033139563 0.00293752566184 0.002828
|
||||
13 170.376649 10.233332 808 11.753332 0.036667 1.03578178868085 0.00323133991668 0.003232
|
||||
14 182.199981 10.273332 915 11.823332 0.04 1.02 0.00352506604487 0.00366
|
||||
15 193.93998 10.319998 1024 11.739999 0.046666 1.03460679604144 0.00411251830124 0.004096
|
||||
16 205.553312 10.373332 1146 11.613332 0.053334 1.02344405752382 0.00470014681092 0.004584
|
||||
17 217.136644 10.429998 1268 11.583332 0.056666 1.02080025799017 0.00499378481246 0.005072
|
||||
18 228.819977 10.496665 1398 11.683333 0.066667 1.02961301122899 0.00587513945033 0.005592
|
||||
19 240.553309 10.566665 1538 11.733332 0.07 1.03401925565842 0.00616886557852 0.006152
|
||||
20 252.283308 10.646665 1681 11.729999 0.08 1.03372552953023 0.00705013208973 0.006724
|
||||
21 263.939973 10.729998 1831 11.656665 0.083333 1.02726284969688 0.00734385821792 0.007324
|
||||
22 275.533305 10.823332 1983 11.593332 0.093334 1.02168152450139 0.00822521285579 0.007932
|
||||
23 287.156637 10.929998 2153 11.623332 0.106666 1.02432532403504 0.00940011736854 0.008612
|
||||
24 298.926636 11.043332 2311 11.769999 0.113334 1.03725059557509 0.00998774587822 0.009244
|
||||
25 310.666635 11.166665 2491 11.739999 0.123333 1.03460679604145 0.01086892426279 0.009964
|
||||
26 322.389967 11.303332 2668 11.723332 0.136667 1.0331379891472 0.01204400502884 0.010672
|
||||
27 333.976633 11.443332 2853 11.586666 0.14 1.02109407224501 0.01233773115703 0.011412
|
||||
28 346.243298 11.596665 3049 12.266665 0.153333 1.02 0.01351272379643 0.012196
|
||||
29 357.923297 11.759998 3242 11.679999 0.163333 1.02931919697415 0.01439399030765 0.012968
|
||||
30 369.683296 11.933332 3446 11.759999 0.173334 1.03636932906388 0.01527534494552 0.013784
|
||||
31 381.433295 12.116665 3656 11.749999 0.183333 1.03548806255266 0.01615652333008 0.014624
|
||||
32 393.12996 12.316665 3873 11.696665 0.2 1.03078791574174 0.01762533022433 0.015492
|
||||
33 404.729959 12.519998 4097 11.599999 0.203333 1.02226906488442 0.01791905635252 0.016388
|
||||
34 416.336625 12.743332 4323 11.606666 0.223334 1.02285660526745 0.0196816775016 0.017292
|
||||
35 428.186623 12.976665 4561 11.849998 0.233333 1.02 0.02056285588617 0.018244
|
||||
36 440.949955 13.226665 4793 12.763332 0.25 1.02 0.02203166278041 0.019172
|
||||
37 452.653288 13.479998 5043 11.703333 0.253333 1.03137554425142 0.0223253889086 0.020172
|
||||
38 464.283286 13.743331 5297 11.629998 0.263333 1.02491277629141 0.02320665541982 0.021188
|
||||
39 475.866619 14.026665 5548 11.583333 0.283334 1.02080034611683 0.0249692765689 0.022192
|
||||
40 487.576617 14.326665 5819 11.709998 0.3 1.03196290838114 0.02643799533649 0.023276
|
||||
41 499.313283 14.633331 6081 11.736666 0.306666 1.03431306991326 0.02702544759287 0.024324
|
||||
42 511.039948 14.956665 6357 11.726665 0.323334 1.03343171527539 0.02849434261377 0.025428
|
||||
43 522.689947 15.286665 6639 11.649999 0.33 1.0266753974405 0.02908179487014 0.026556
|
||||
44 534.269946 15.643331 6931 11.579999 0.356666 1.02050653186199 0.03143178014895 0.027724
|
||||
45 545.909945 16.009998 7221 11.639999 0.366667 1.02579413092928 0.03231313478682 0.028884
|
||||
46 557.659944 16.396665 7516 11.749999 0.386667 1.03548806255266 0.03407566780925 0.030064
|
||||
47 569.419943 16.796664 7829 11.759999 0.399999 1.03636932906388 0.03525057232201 0.031316
|
||||
48 581.116608 17.226664 8131 11.6966650000001 0.43 1.03078791574175 0.03789445998231 0.032524
|
||||
49 592.686607 17.636664 8455 11.5699989999999 0.41 1.01962526535076 0.03613192695987 0.03382
|
||||
50 604.243272 18.063331 8771 11.5566650000001 0.426667 1.01845018458472 0.03760073385412 0.035084
|
||||
51 615.983271 18.503331 9106 11.7399989999999 0.44 1.03460679604144 0.03877572649352 0.036424
|
||||
52 627.719937 18.959998 9434 11.736666 0.456667 1.03431306991326 0.04024453338777 0.037736
|
||||
53 639.453269 19.433331 9774 11.733332 0.473333 1.03401925565842 0.04171325215536 0.039096
|
||||
54 651.066601 19.919998 10125 11.613332 0.486667 1.02344405752382 0.04288833292142 0.0405
|
||||
55 662.653267 20.426664 10471 11.586666 0.506666 1.02109407224501 0.0446507778172 0.041884
|
||||
56 674.356599 20.946664 10834 11.7033319999999 0.52 1.03137545612476 0.04582585858325 0.043336
|
||||
57 686.106598 21.486664 11194 11.749999 0.54 1.03548806255266 0.04758839160569 0.044776
|
||||
58 697.833263 22.039997 11558 11.726665 0.553333 1.03343171527539 0.04876338424509 0.046232
|
||||
59 709.426595 22.616664 11943 11.593332 0.576667 1.02168152450139 0.05081973152236 0.047772
|
||||
60 720.906594 23.226664 12323 11.479999 0.61 1.01169386674982 0.0537572571842 0.049292
|
||||
61 732.459926 23.859997 12711 11.553332 0.633333 1.01815645845652 0.05581351633482 0.050844
|
||||
62 744.096592 24.566664 13107 11.636666 0.706667 1.02550040480109 0.06227619616818 0.052428
|
||||
63 755.729924 25.28333 13499 11.633332 0.716666 1.02520659054625 0.06315737455274 0.053996
|
||||
64 767.323256 26.03333 13910 11.593332 0.75 1.02168152450139 0.06609498834123 0.05564
|
||||
65 778.773255 26.776663 14313 11.4499989999999 0.743333 1.00905006721616 0.0655074479582 0.057252
|
||||
66 790.213254 27.536663 14729 11.4399990000001 0.76 1.00816880070496 0.06697625485245 0.058916
|
||||
67 801.769919 28.259997 15158 11.556665 0.723334 1.01845018458471 0.06374500306242 0.060632
|
||||
68 813.346585 28.999997 15579 11.576666 0.74 1.0202128057338 0.06521372183002 0.062316
|
||||
69 824.90325 29.766663 16017 11.556665 0.766666 1.01845018458471 0.06756370710883 0.064068
|
||||
70 836.343249 30.54333 16450 11.4399990000001 0.776667 1.00816880070496 0.06844506174669 0.0658
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||||
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664 7564.12591 2492.72975 3383 11.3333320000002 0.16333299999997 0.99876859520977 0.01439399030765 0.013532
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678 7722.095894 2494.916417 3110 11.2499989999997 0.15000000000009 0.99142473699181 0.01321899766825 0.01244
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679 7733.425893 2495.066417 3096 11.3299989999996 0.15000000000009 0.99847486908154 0.01321899766825 0.012384
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681 7756.072557 2495.35975 3059 11.3133320000006 0.14666699999998 0.99700606218738 0.01292527154006 0.012236
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682 7767.259223 2495.50975 3037 11.1866659999996 0.15000000000009 0.98584341179632 0.01321899766825 0.012148
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683 7778.519222 2495.653083 3024 11.2599989999999 0.14333299999998 0.99230600350305 0.01263145728522 0.012096
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685 7801.209219 2495.943083 2983 11.3433320000004 0.14333299999998 0.99964986172101 0.01263145728522 0.011932
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687 7823.719217 2496.226417 2943 11.1833319999996 0.13999999999987 0.98554959754148 0.01233773115702 0.011772
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689 7846.295882 2496.50975 2905 11.3733330000005 0.14000000000033 1.00229374938132 0.01233773115706 0.01162
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691 7868.922546 2496.786416 2871 11.2999989999998 0.13999899999999 0.99583106954791 0.01233764303038 0.011484
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692 7880.082545 2496.923083 2855 11.1599990000004 0.13666700000022 0.98349333839093 0.01204400502886 0.01142
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||||
693 7891.292544 2497.05975 2836 11.2099989999997 0.13666699999976 0.98789967094695 0.01204400502882 0.011344
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694 7902.655876 2497.193083 2821 11.3633319999999 0.13333300000022 1.0014123947434 0.01175019077402 0.011284
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696 7925.315874 2497.463083 2786 11.2999989999998 0.13333300000022 0.99583106954791 0.01175019077402 0.011144
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697 7936.502539 2497.593083 2768 11.1866650000002 0.13000000000011 0.98584332366972 0.01145646464582 0.011072
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699 7959.012537 2497.856416 2737 11.3199989999994 0.13000000000011 0.9975936025703 0.01145646464582 0.010948
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700 7970.362536 2497.98975 2708 11.349999 0.1333340000001 1.00023740210401 0.01175027890066 0.010832
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701 7981.655868 2498.116416 2696 11.2933320000002 0.12666599999966 0.99524352916491 0.01116265039094 0.010784
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||||
702 7992.835867 2498.246416 2674 11.179999 0.13000000000011 0.98525587141332 0.01145646464582 0.010696
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||||
703 8004.025866 2498.373083 2659 11.1899990000002 0.126667 0.98613713792456 0.01116273851763 0.010636
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||||
704 8015.362531 2498.49975 2643 11.3366649999998 0.126667 0.99906232133793 0.01116273851763 0.010572
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||||
705 8026.675863 2498.626416 2626 11.3133320000006 0.12666600000011 0.99700606218738 0.01116265039098 0.010504
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||||
706 8037.979196 2498.74975 2611 11.3033329999998 0.12333399999989 0.99612488380275 0.01086901238943 0.010444
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||||
707 8049.159195 2498.883083 2589 11.179999 0.13333300000022 0.98525587141332 0.01175019077402 0.010356
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||||
708 8060.359193 2499.013083 2578 11.1999980000001 0.12999999999965 0.98701831630911 0.01145646464578 0.010312
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||||
709 8071.715859 2499.143083 2554 11.3566659999997 0.13000000000011 1.000824942487 0.01145646464582 0.010216
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||||
710 8083.052525 2499.26975 2541 11.3366660000002 0.126667 0.99906240946461 0.01116273851763 0.010164
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||||
711 8094.36919 2499.396416 2520 11.3166650000003 0.12666600000011 0.99729978831554 0.01116265039098 0.01008
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||||
712 8105.549189 2499.523083 2507 11.179999 0.126667 0.98525587141332 0.01116273851763 0.010028
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||||
713 8116.755854 2499.64975 2492 11.2066649999997 0.126667 0.98760585669211 0.01116273851763 0.009968
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||||
714 8128.109187 2499.776416 2474 11.353333 0.12666600000011 1.00053121635885 0.01116265039098 0.009896
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||||
715 8139.449186 2499.89975 2455 11.3399989999998 0.12333399999989 0.99935613559277 0.01086901238943 0.00982
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||||
716 8150.792518 2500.026416 2436 11.3433320000004 0.12666600000011 0.99964986172101 0.01116265039098 0.009744
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||||
717 8161.999183 2500.146416 2422 11.2066649999997 0.11999999999989 0.98760585669211 0.01057519813459 0.009688
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||||
718 8173.219182 2500.269749 2403 11.2199989999999 0.123333 0.98878093745818 0.01086892426279 0.009612
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||||
719 8184.569181 2500.393083 2388 11.349999 0.12333399999989 1.00023740210401 0.01086901238943 0.009552
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||||
720 8195.882513 2500.513083 2368 11.3133320000006 0.11999999999989 0.99700606218738 0.01057519813459 0.009472
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||||
721 8207.182512 2500.633083 2358 11.2999989999989 0.12000000000035 0.99583106954783 0.01057519813463 0.009432
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||||
722 8218.392511 2500.753083 2337 11.2099990000006 0.11999999999989 0.98789967094703 0.01057519813459 0.009348
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||||
723 8229.58251 2500.869749 2321 11.1899990000002 0.1166659999999 0.98613713792456 0.01028138387975 0.009284
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724 8240.912509 2500.989749 2306 11.3299989999996 0.11999999999989 0.99847486908154 0.01057519813459 0.009224
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||||
725 8252.235841 2501.106416 2291 11.3233319999999 0.11666700000023 0.99788732869854 0.01028147200643 0.009164
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||||
726 8263.552506 2501.223083 2276 11.3166650000003 0.11666699999978 0.99729978831554 0.01028147200639 0.009104
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||||
727 8274.759172 2501.336416 2256 11.206666 0.11333300000024 0.98760594481879 0.00998765775159 0.009024
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728 8285.952504 2501.453083 2245 11.1933320000007 0.11666699999978 0.9864308640528 0.01028147200639 0.00898
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||||
729 8297.302503 2501.566416 2225 11.349999 0.11333300000024 1.00023740210401 0.00998765775159 0.0089
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||||
730 8308.642502 2501.679749 2212 11.3399989999998 0.11333299999978 0.99935613559277 0.00998765775155 0.008848
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||||
731 8319.949168 2501.793083 2192 11.3066659999986 0.11333400000012 0.99641860993083 0.00998774587823 0.008768
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||||
732 8331.169166 2501.903083 2176 11.2199980000005 0.11000000000013 0.98878084933158 0.00969393162339 0.008704
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||||
733 8342.385832 2502.013083 2160 11.2166660000003 0.10999999999967 0.98848721133003 0.00969393162335 0.00864
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||||
734 8353.705831 2502.123083 2144 11.3199989999994 0.11000000000013 0.9975936025703 0.00969393162339 0.008576
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||||
735 8365.032496 2502.233083 2132 11.3266650000005 0.11000000000013 0.99818105482678 0.00969393162339 0.008528
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||||
736 8376.389162 2502.339749 2115 11.3566659999997 0.10666600000013 1.000824942487 0.00940011736855 0.00846
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||||
737 8387.625827 2502.446416 2102 11.2366650000004 0.10666700000002 0.99024965622582 0.00940020549519 0.008408
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||||
738 8398.845826 2502.556416 2084 11.2199990000008 0.10999999999967 0.98878093745826 0.00969393162335 0.008336
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||||
739 8410.175825 2502.659749 2066 11.3299989999996 0.10333300000002 0.99847486908154 0.00910639124035 0.008264
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||||
740 8421.519157 2502.766416 2052 11.3433320000004 0.10666700000002 0.99964986172101 0.00940020549519 0.008208
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||||
741 8432.829156 2502.869749 2038 11.3099989999992 0.10333300000002 0.99671233605906 0.00910639124035 0.008152
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||||
742 8444.042488 2502.973083 2023 11.2133319999994 0.1033339999999 0.98819339707511 0.009106479367 0.008092
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||||
743 8455.215821 2503.076416 2010 11.1733330000006 0.10333300000002 0.98466841915701 0.00910639124035 0.00804
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||||
744 8466.482486 2503.176416 1992 11.266665000001 0.09999999999991 0.99289345575952 0.00881266511216 0.007968
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||||
745 8477.795818 2503.279749 1976 11.3133319999997 0.10333300000002 0.9970060621873 0.00910639124035 0.007904
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||||
746 8489.069151 2503.379749 1963 11.2733329999992 0.10000000000036 0.99348108426904 0.0088126651122 0.007852
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||||
747 8500.312483 2503.479749 1943 11.243332 0.09999999999991 0.99083719660881 0.00881266511216 0.007772
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||||
748 8511.492482 2503.576416 1929 11.179999 0.0966669999998 0.98525587141332 0.00851893898396 0.007716
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||||
749 8522.795814 2503.673082 1915 11.3033319999995 0.09666599999991 0.99612479567607 0.00851885085732 0.00766
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||||
750 8534.142479 2503.773082 1901 11.3466650000009 0.10000000000036 0.99994358784925 0.0088126651122 0.007604
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||||
751 8545.472478 2503.873082 1889 11.3299989999996 0.09999999999991 0.99847486908154 0.00881266511216 0.007556
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||||
752 8556.739144 2503.969749 1875 11.2666659999995 0.0966669999998 0.99289354388604 0.00851893898396 0.0075
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||||
753 8567.955809 2504.066416 1859 11.2166649999999 0.09666700000025 0.98848712320335 0.008518938984 0.007436
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||||
754 8579.279142 2504.163082 1841 11.3233330000003 0.09666599999991 0.99788741682522 0.00851885085732 0.007364
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||||
755 8590.62914 2504.256416 1829 11.3499979999997 0.09333400000014 1.00023731397733 0.0082252128558 0.007316
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||||
756 8601.995806 2504.353082 1812 11.3666660000017 0.09666599999991 1.0017062089984 0.00851885085732 0.007248
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||||
757 8613.265805 2504.443082 1803 11.2699989999983 0.08999999999969 0.99318727001412 0.00793139860092 0.007212
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||||
758 8624.475804 2504.533082 1784 11.2099990000006 0.09000000000015 0.98789967094703 0.00793139860096 0.007136
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||||
759 8635.762469 2504.616416 1772 11.2866649999996 0.08333399999992 0.99465598878183 0.00734394634456 0.007088
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||||
760 8647.092468 2504.703082 1758 11.3299990000014 0.08666600000015 0.9984748690817 0.00763758434612 0.007032
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||||
761 8658.439134 2504.789749 1742 11.3466659999995 0.08666700000003 0.99994367597577 0.00763767247276 0.006968
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||||
762 8669.699133 2504.873082 1728 11.2599989999999 0.08333300000004 0.99230600350305 0.00734385821792 0.006912
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||||
763 8680.899131 2504.959749 1711 11.1999980000001 0.08666700000003 0.98701831630911 0.00763767247276 0.006844
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||||
764 8692.20913 2505.043082 1698 11.3099989999992 0.08333300000004 0.99671233605906 0.00734385821792 0.006792
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||||
765 8703.542462 2505.126416 1683 11.3333320000002 0.08333399999992 0.99876859520977 0.00734394634456 0.006732
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||||
766 8714.872461 2505.209749 1673 11.3299990000014 0.08333300000004 0.9984748690817 0.00734385821792 0.006692
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||||
767 8726.125794 2505.289749 1660 11.2533329999987 0.07999999999993 0.99171855124657 0.00705013208973 0.00664
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||||
768 8737.312459 2505.373082 1643 11.1866650000011 0.08333300000004 0.9858433236698 0.00734385821792 0.006572
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||||
769 8748.559125 2505.453082 1630 11.2466659999991 0.07999999999993 0.99113101086357 0.00705013208973 0.00652
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||||
770 8759.912457 2505.533082 1615 11.3533320000006 0.07999999999993 1.00053112823225 0.00705013208973 0.00646
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||||
771 8771.219122 2505.613082 1603 11.3066650000001 0.07999999999993 0.99641852180431 0.00705013208973 0.006412
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||||
772 8782.479121 2505.689749 1591 11.2599989999999 0.07666700000027 0.99230600350305 0.00675640596157 0.006364
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||||
773 8793.68912 2505.769749 1577 11.2099989999988 0.07999999999993 0.98789967094687 0.00705013208973 0.006308
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||||
774 8804.952452 2505.846416 1563 11.2633320000004 0.07666699999982 0.99259972963129 0.00675640596153 0.006252
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||||
775 8816.305785 2505.923082 1549 11.3533330000009 0.07666599999993 1.00053121635893 0.00675631783489 0.006196
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||||
776 8827.63245 2505.999749 1535 11.3266649999987 0.07666700000027 0.99818105482662 0.00675640596157 0.00614
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||||
777 8838.925782 2506.073082 1519 11.2933320000011 0.07333299999982 0.99524352916499 0.00646259170669 0.006076
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||||
778 8850.119114 2506.149749 1507 11.1933319999989 0.07666700000027 0.98643086405264 0.00675640596157 0.006028
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||||
779 8861.369113 2506.223082 1492 11.2499990000015 0.07333299999982 0.99142473699197 0.00646259170669 0.005968
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||||
780 8872.715779 2506.296416 1480 11.3466659999995 0.07333400000016 0.99994367597577 0.00646267983337 0.00592
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||||
781 8884.092444 2506.369749 1468 11.3766649999998 0.07333299999982 1.0025873873828 0.00646259170669 0.005872
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||||
782 8895.385777 2506.443082 1460 11.2933329999996 0.07333299999982 0.99524361729151 0.00646259170669 0.00584
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||||
783 8906.575776 2506.513082 1441 11.1899990000002 0.07000000000016 0.98613713792456 0.00616886557853 0.005764
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||||
784 8917.819108 2506.586416 1432 11.243332 0.07333400000016 0.99083719660881 0.00646267983337 0.005728
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||||
785 8929.18244 2506.656416 1414 11.3633320000008 0.06999999999971 1.00141239474348 0.00616886557849 0.005656
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||||
786 8940.562439 2506.726415 1403 11.3799989999989 0.06999900000028 1.00288120163755 0.00616877745189 0.005612
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||||
787 8951.862438 2506.793082 1393 11.2999990000008 0.06666700000005 0.99583106954799 0.00587513945033 0.005572
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||||
788 8963.049103 2506.863082 1378 11.1866649999993 0.06999999999971 0.98584332366964 0.00616886557849 0.005512
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||||
789 8974.285769 2506.929749 1368 11.2366660000007 0.06666700000005 0.9902497443525 0.00587513945033 0.005472
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||||
790 8985.622434 2506.999749 1353 11.3366650000007 0.07000000000016 0.99906232133801 0.00616886557853 0.005412
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||||
791 8996.982433 2507.066415 1343 11.3599989999984 0.06666599999971 1.00111866861508 0.00587505132365 0.005372
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||||
792 9008.305765 2507.133082 1328 11.3233319999999 0.06666700000005 0.99788732869854 0.00587513945033 0.005312
|
||||
793 9019.485764 2507.196415 1317 11.179999 0.06333300000006 0.98525587141332 0.00558132519549 0.005268
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||||
794 9030.699096 2507.263082 1302 11.2133320000012 0.06666700000005 0.98819339707527 0.00587513945033 0.005208
|
||||
795 9042.022429 2507.326415 1288 11.3233330000003 0.06333300000006 0.99788741682522 0.00558132519549 0.005152
|
||||
796 9053.369094 2507.389749 1280 11.3466649999991 0.06333399999994 0.99994358784909 0.00558141332213 0.00512
|
||||
797 9064.702426 2507.453082 1263 11.3333320000002 0.06333300000006 0.99876859520977 0.00558132519549 0.005052
|
||||
798 9075.882425 2507.513082 1256 11.179999 0.05999999999995 0.98525587141332 0.00528759906729 0.005024
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||||
799 9087.082424 2507.576415 1241 11.1999990000004 0.06333300000006 0.98701840443579 0.00558132519549 0.004964
|
||||
800 9098.42909 2507.636415 1230 11.3466659999995 0.05999999999995 0.99994367597577 0.00528759906729 0.00492
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||||
801 9109.789089 2507.696415 1220 11.3599990000002 0.05999999999995 1.00111866861524 0.00528759906729 0.00488
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||||
802 9121.139087 2507.756415 1210 11.3499979999997 0.05999999999995 1.00023731397733 0.00528759906729 0.00484
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||||
803 9132.31242 2507.816415 1198 11.1733330000006 0.05999999999995 0.98466841915701 0.00528759906729 0.004792
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||||
804 9143.545752 2507.876415 1185 11.2333319999998 0.0600000000004 0.98995593009758 0.00528759906733 0.00474
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||||
805 9154.895751 2507.933082 1171 11.349999 0.05666699999983 1.00023740210401 0.0049938729391 0.004684
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||||
806 9166.292416 2507.993082 1159 11.3966650000002 0.05999999999995 1.00434992040527 0.00528759906729 0.004636
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||||
807 9177.619082 2508.049749 1145 11.326665999999 0.05666699999983 0.9981811429533 0.0049938729391 0.00458
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||||
808 9188.802414 2508.106415 1134 11.1833320000005 0.0566660000004 0.98554959754156 0.00499378481249 0.004536
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||||
809 9200.019079 2508.159749 1124 11.2166649999999 0.05333399999972 0.98848712320335 0.0047001468109 0.004496
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||||
810 9211.365745 2508.216415 1112 11.3466659999995 0.05666599999995 0.99994367597577 0.00499378481245 0.004448
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||||
811 9222.709077 2508.269749 1104 11.3433320000004 0.05333400000018 0.99964986172101 0.00470014681094 0.004416
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||||
812 9234.022409 2508.323082 1092 11.3133319999997 0.05333299999984 0.9970060621873 0.00470005868426 0.004368
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||||
813 9245.219075 2508.379749 1080 11.1966660000016 0.05666700000029 0.98672467830771 0.00499387293914 0.00432
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||||
814 9256.435741 2508.433082 1071 11.2166659999984 0.05333299999984 0.98848721132987 0.00470005868426 0.004284
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||||
815 9267.809073 2508.486415 1053 11.373332000001 0.05333299999984 1.00229366125472 0.00470005868426 0.004212
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||||
816 9279.142405 2508.536415 1044 11.3333320000002 0.05000000000018 0.99876859520977 0.0044063325561 0.004176
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||||
817 9290.462404 2508.589749 1034 11.3199989999994 0.05333400000018 0.9975936025703 0.00470014681094 0.004136
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||||
818 9301.649069 2508.639749 1025 11.1866649999993 0.04999999999973 0.98584332366964 0.00440633255606 0.0041
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||||
819 9312.869068 2508.689749 1015 11.2199990000008 0.05000000000018 0.98878093745826 0.0044063325561 0.00406
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||||
820 9324.2224 2508.739749 1002 11.3533320000006 0.04999999999973 1.00053112823225 0.00440633255606 0.004008
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||||
821 9335.579066 2508.789749 992 11.3566659999997 0.05000000000018 1.000824942487 0.0044063325561 0.003968
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||||
822 9346.902398 2508.836415 978 11.3233319999999 0.04666600000019 0.99788732869854 0.00411251830126 0.003912
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||||
823 9358.102397 2508.886415 973 11.1999990000004 0.04999999999973 0.98701840443579 0.00440633255606 0.003892
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||||
824 9369.312396 2508.933082 956 11.2099989999988 0.04666700000007 0.98789967094687 0.0041126064279 0.003824
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||||
825 9380.695728 2508.983082 947 11.3833320000012 0.05000000000018 1.00317492776595 0.0044063325561 0.003788
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||||
826 9392.032394 2509.029749 936 11.3366659999992 0.04666699999962 0.99906240946453 0.00411260642786 0.003744
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||||
827 9403.369059 2509.076415 926 11.3366650000007 0.04666600000019 0.99906232133801 0.00411251830126 0.003704
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||||
828 9414.565725 2509.119749 918 11.1966659999998 0.04333399999996 0.98672467830755 0.0038188802997 0.003672
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||||
829 9425.779057 2509.166415 906 11.2133319999994 0.04666600000019 0.98819339707511 0.00411251830126 0.003624
|
||||
830 9437.149056 2509.209749 895 11.3699990000005 0.04333399999996 1.00199993512648 0.0038188802997 0.00358
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||||
831 9448.499055 2509.256415 888 11.349999 0.04666599999973 1.00023740210401 0.00411251830122 0.003552
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||||
832 9459.829054 2509.299749 879 11.3299989999996 0.04333399999996 0.99847486908154 0.0038188802997 0.003516
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||||
833 9471.025719 2509.343082 868 11.1966649999995 0.04333300000008 0.98672459018087 0.00381879217306 0.003472
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||||
834 9482.242385 2509.386415 859 11.2166660000003 0.04333300000008 0.98848721133003 0.00381879217306 0.003436
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||||
835 9493.56905 2509.429749 846 11.3266650000005 0.04333399999996 0.99818105482678 0.0038188802997 0.003384
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||||
836 9504.919049 2509.469749 835 11.349999 0.03999999999996 1.00023740210401 0.00352506604486 0.00334
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||||
837 9516.245715 2509.513082 822 11.326665999999 0.04333300000008 0.9981811429533 0.00381879217306 0.003288
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||||
838 9527.469047 2509.553082 814 11.2233320000014 0.03999999999996 0.9890746635865 0.00352506604486 0.003256
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||||
839 9538.695712 2509.593082 805 11.2266650000001 0.03999999999996 0.98936838971458 0.00352506604486 0.00322
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||||
840 9550.019044 2509.633082 795 11.3233319999999 0.03999999999996 0.99788732869854 0.00352506604486 0.00318
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||||
841 9561.352377 2509.673082 791 11.3333329999987 0.03999999999996 0.9987686833363 0.00352506604486 0.003164
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||||
842 9572.745709 2509.713082 776 11.3933320000015 0.04000000000042 1.00405619427719 0.0035250660449 0.003104
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||||
843 9583.972374 2509.753082 770 11.2266650000001 0.03999999999996 0.98936838971458 0.00352506604486 0.00308
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||||
844 9595.172373 2509.789749 760 11.1999989999986 0.03666699999985 0.98701840443563 0.00323133991666 0.00304
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||||
845 9606.509039 2509.826415 746 11.3366660000011 0.03666599999997 0.99906240946469 0.00323125179002 0.002984
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||||
846 9617.845704 2509.866415 739 11.3366649999989 0.03999999999996 0.99906232133785 0.00352506604486 0.002956
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||||
847 9629.20237 2509.903082 727 11.3566660000015 0.03666699999985 1.00082494248717 0.00323133991666 0.002908
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||||
848 9640.439035 2509.939749 724 11.2366649999985 0.03666700000031 0.99024965622566 0.0032313399167 0.002896
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||||
849 9651.662368 2509.973082 713 11.2233329999999 0.03333299999986 0.98907475171302 0.00293752566183 0.002852
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||||
850 9662.982367 2510.009748 706 11.3199990000012 0.03666599999997 0.99759360257046 0.00323125179002 0.002824
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||||
851 9674.339032 2510.046415 694 11.3566649999993 0.03666699999985 1.00082485436032 0.00323133991666 0.002776
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||||
852 9685.662364 2510.079748 684 11.3233319999999 0.03333300000031 0.99788732869854 0.00293752566187 0.002736
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||||
853 9696.892363 2510.113082 675 11.229999000001 0.03333399999974 0.9896622039695 0.00293761378847 0.0027
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||||
854 9708.095695 2510.146415 662 11.2033319999991 0.03333300000031 0.98731213056387 0.00293752566187 0.002648
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||||
855 9719.422361 2510.179748 657 11.3266660000008 0.03333299999986 0.99818114295346 0.00293752566183 0.002628
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||||
856 9730.77236 2510.213082 648 11.349999 0.0333340000002 1.00023740210401 0.00293761378851 0.002592
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||||
857 9742.102359 2510.246415 640 11.3299989999996 0.03333299999986 0.99847486908154 0.00293752566183 0.00256
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||||
858 9753.359024 2510.276415 630 11.256664999999 0.02999999999975 0.99201218924813 0.00264379953363 0.00252
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||||
859 9764.56569 2510.309748 622 11.206666 0.03333300000031 0.98760594481879 0.00293752566187 0.002488
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||||
860 9775.882355 2510.339748 614 11.3166650000003 0.02999999999975 0.99729978831554 0.00264379953363 0.002456
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||||
861 9787.252354 2510.369748 607 11.3699990000005 0.0300000000002 1.00199993512648 0.00264379953367 0.002428
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||||
862 9798.592353 2510.399748 597 11.3399989999998 0.02999999999975 0.99935613559277 0.00264379953363 0.002388
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||||
863 9809.865685 2510.429748 591 11.2733320000007 0.0300000000002 0.99348099614252 0.00264379953367 0.002364
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||||
864 9821.075684 2510.459748 582 11.2099989999988 0.0300000000002 0.98789967094687 0.00264379953367 0.002328
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||||
865 9832.38235 2510.489748 573 11.3066660000004 0.02999999999975 0.99641860993099 0.00264379953363 0.002292
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||||
866 9843.745682 2510.519748 566 11.3633320000008 0.0300000000002 1.00141239474348 0.00264379953367 0.002264
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||||
867 9855.079014 2510.546415 555 11.3333320000002 0.02666699999963 0.99876859520977 0.00235007340543 0.00222
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||||
868 9866.339013 2510.576415 548 11.2599989999999 0.0300000000002 0.99230600350305 0.00264379953367 0.002192
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||||
869 9877.535678 2510.603082 537 11.1966649999995 0.02666700000009 0.98672459018087 0.00235007340547 0.002148
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||||
870 9888.829011 2510.629748 531 11.2933329999996 0.02666599999975 0.99524361729151 0.00234998527879 0.002124
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||||
871 9900.172343 2510.656415 524 11.3433320000004 0.02666700000009 0.99964986172101 0.00235007340547 0.002096
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||||
872 9911.499008 2510.683082 515 11.3266650000005 0.02666700000009 0.99818105482678 0.00235007340547 0.00206
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||||
873 9922.765674 2510.709748 510 11.2666659999995 0.0266660000002 0.99289354388604 0.00234998527883 0.00204
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||||
874 9933.952339 2510.733082 498 11.1866649999993 0.02333399999998 0.98584332366964 0.00205634727727 0.001992
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||||
875 9945.222338 2510.759748 494 11.2699990000001 0.02666599999975 0.99318727001428 0.00234998527879 0.001976
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||||
876 9956.562337 2510.783082 484 11.3399989999998 0.02333399999998 0.99935613559277 0.00205634727727 0.001936
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||||
877 9967.875669 2510.809748 476 11.3133319999997 0.0266660000002 0.9970060621873 0.00234998527883 0.001904
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||||
878 9979.129002 2510.833082 471 11.2533330000006 0.02333399999998 0.99171855124673 0.00205634727727 0.001884
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||||
879 9990.319 2510.856415 462 11.1899979999998 0.02333300000009 0.98613704979788 0.00205625915063 0.001848
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||||
880 10001.578999 2510.879748 458 11.2599989999999 0.02333299999964 0.99230600350305 0.00205625915059 0.001832
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||||
881 10012.922332 2510.903082 447 11.3433330000007 0.02333399999998 0.99964994984769 0.00205634727727 0.001788
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||||
882 10024.228997 2510.926415 440 11.3066650000001 0.02333300000009 0.99641852180431 0.00205625915063 0.00176
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||||
883 10035.462329 2510.946415 433 11.2333319999998 0.01999999999998 0.98995593009758 0.00176253302243 0.001732
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||||
884 10046.632328 2510.969748 426 11.1699989999997 0.02333300000009 0.98437460490209 0.00205625915063 0.001704
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||||
885 10057.872327 2510.989748 418 11.2399989999994 0.01999999999998 0.99054347048058 0.00176253302243 0.001672
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||||
886 10069.198993 2511.013082 411 11.3266660000008 0.02333399999998 0.99818114295346 0.00205634727727 0.001644
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||||
887 10080.512325 2511.033082 406 11.3133319999997 0.01999999999998 0.9970060621873 0.00176253302243 0.001624
|
||||
888 10091.755657 2511.053082 397 11.243332 0.01999999999998 0.99083719660881 0.00176253302243 0.001588
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||||
889 10102.938989 2511.073082 391 11.1833320000005 0.01999999999998 0.98554959754156 0.00176253302243 0.001564
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||||
890 10114.185655 2511.093082 383 11.2466659999991 0.01999999999998 0.99113101086357 0.00176253302243 0.001532
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||||
891 10125.508987 2511.113082 379 11.3233319999999 0.01999999999998 0.99788732869854 0.00176253302243 0.001516
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||||
892 10136.828986 2511.133082 371 11.3199990000012 0.01999999999998 0.99759360257046 0.00176253302243 0.001484
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||||
893 10148.108985 2511.153082 366 11.2799990000003 0.01999999999998 0.99406853652552 0.00176253302243 0.001464
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||||
894 10159.288984 2511.169748 359 11.179999 0.01666599999999 0.98525587141332 0.00146871876759 0.001436
|
||||
895 10170.598982 2511.189748 353 11.3099979999988 0.01999999999998 0.99671224793238 0.00176253302243 0.001412
|
||||
896 10181.938981 2511.206415 344 11.3399989999998 0.01666700000033 0.99935613559277 0.00146880689427 0.001376
|
||||
897 10193.312314 2511.223082 338 11.3733330000014 0.01666699999987 1.0022937493814 0.00146880689423 0.001352
|
||||
898 10204.632312 2511.243082 332 11.319997999999 0.01999999999998 0.99759351444362 0.00176253302243 0.001328
|
||||
899 10215.828978 2511.259748 323 11.1966659999998 0.01666599999999 0.98672467830755 0.00146871876759 0.001292
|
||||
900 10227.11231 2511.276415 317 11.2833320000009 0.01666699999987 0.99436226265376 0.00146880689423 0.001268
|
||||
901 10238.468976 2511.293082 312 11.3566659999997 0.01666700000033 1.000824942487 0.00146880689427 0.001248
|
||||
902 10249.788975 2511.306415 305 11.3199989999994 0.01333299999988 0.9975936025703 0.00117499263939 0.00122
|
||||
903 10261.088973 2511.323082 302 11.2999980000004 0.01666699999987 0.99583098142131 0.00146880689423 0.001208
|
||||
904 10272.265639 2511.339748 293 11.1766659999994 0.01666599999999 0.98496214528508 0.00146871876759 0.001172
|
||||
905 10283.485638 2511.353082 288 11.2199990000008 0.01333400000021 0.98878093745826 0.00117508076607 0.001152
|
||||
906 10294.825637 2511.369748 284 11.3399989999998 0.01666599999999 0.99935613559277 0.00146871876759 0.001136
|
||||
907 10306.175636 2511.383082 280 11.349999 0.01333399999976 1.00023740210401 0.00117508076603 0.00112
|
||||
908 10317.492301 2511.399748 273 11.3166650000003 0.01666599999999 0.99729978831554 0.00146871876759 0.001092
|
||||
909 10328.678967 2511.413082 268 11.1866659999996 0.01333400000021 0.98584341179632 0.00117508076607 0.001072
|
||||
910 10339.902299 2511.426415 260 11.2233319999996 0.01333299999988 0.98907466358634 0.00117499263939 0.00104
|
||||
911 10351.235631 2511.439748 252 11.3333320000002 0.01333299999988 0.99876859520977 0.00117499263939 0.001008
|
||||
912 10362.592297 2511.453082 247 11.3566659999997 0.01333400000021 1.000824942487 0.00117508076607 0.000988
|
||||
913 10373.912295 2511.466415 243 11.3199980000009 0.01333299999988 0.99759351444378 0.00117499263939 0.000972
|
||||
914 10385.098961 2511.479748 237 11.1866659999996 0.01333300000033 0.98584341179632 0.00117499263943 0.000948
|
||||
915 10396.312293 2511.493082 233 11.2133320000012 0.01333399999976 0.98819339707527 0.00117508076603 0.000932
|
||||
916 10407.645625 2511.503082 228 11.3333319999983 0.01000000000022 0.99876859520961 0.00088126651124 0.000912
|
||||
917 10418.978958 2511.516415 222 11.3333330000005 0.01333299999988 0.99876868333646 0.00117499263939 0.000888
|
||||
918 10430.33229 2511.526415 216 11.3533320000006 0.00999999999976 1.00053112823225 0.0008812665112 0.000864
|
||||
919 10441.512289 2511.539748 212 11.179999 0.01333300000033 0.98525587141332 0.00117499263943 0.000848
|
||||
920 10452.725621 2511.549748 204 11.2133319999994 0.00999999999976 0.98819339707511 0.0008812665112 0.000816
|
||||
921 10464.068953 2511.559748 201 11.3433320000004 0.01000000000022 0.99964986172101 0.00088126651124 0.000804
|
||||
922 10475.435619 2511.569748 195 11.3666659999999 0.00999999999976 1.00170620899824 0.0008812665112 0.00078
|
||||
923 10486.782284 2511.583082 195 11.3466650000009 0.01333400000021 0.99994358784925 0.00117508076607 0.00078
|
||||
924 10497.982283 2511.593082 189 11.1999989999986 0.00999999999976 0.98701840443563 0.0008812665112 0.000756
|
||||
925 10509.175615 2511.603082 184 11.1933320000007 0.01000000000022 0.9864308640528 0.00088126651124 0.000736
|
||||
926 10520.535614 2511.613082 178 11.3599990000002 0.00999999999976 1.00111866861524 0.0008812665112 0.000712
|
||||
927 10531.855613 2511.619748 173 11.3199989999994 0.00666600000022 0.9975936025703 0.0005874522564 0.000692
|
||||
928 10543.185612 2511.629748 168 11.3299989999996 0.00999999999976 0.99847486908154 0.0008812665112 0.000672
|
||||
929 10554.392277 2511.639748 161 11.2066650000015 0.01000000000022 0.98760585669227 0.00088126651124 0.000644
|
||||
930 10565.612276 2511.649748 157 11.219998999999 0.00999999999976 0.9887809374581 0.0008812665112 0.000628
|
||||
931 10576.982275 2511.656415 154 11.3699990000005 0.00666700000011 1.00199993512648 0.00058754038304 0.000616
|
||||
932 10588.312274 2511.666415 149 11.3299989999996 0.01000000000022 0.99847486908154 0.00088126651124 0.000596
|
||||
933 10599.662273 2511.673082 145 11.349999 0.00666699999965 1.00023740210401 0.000587540383 0.00058
|
||||
934 10610.878938 2511.679748 140 11.2166649999999 0.00666600000022 0.98848712320335 0.0005874522564 0.00056
|
||||
935 10622.095604 2511.689748 138 11.2166660000003 0.00999999999976 0.98848721133003 0.0008812665112 0.000552
|
||||
936 10633.465603 2511.696415 135 11.3699990000005 0.00666700000011 1.00199993512648 0.00058754038304 0.00054
|
||||
937 10644.805602 2511.703082 131 11.3399989999998 0.00666700000011 0.99935613559277 0.00058754038304 0.000524
|
||||
938 10656.152267 2511.709748 127 11.3466649999991 0.00666600000022 0.99994358784909 0.0005874522564 0.000508
|
||||
939 10667.392266 2511.716415 124 11.2399990000013 0.00666699999965 0.99054347048074 0.000587540383 0.000496
|
||||
940 10678.618932 2511.723082 117 11.2266659999987 0.00666700000011 0.9893684778411 0.00058754038304 0.000468
|
||||
941 10689.955597 2511.729748 113 11.3366650000007 0.00666600000022 0.99906232133801 0.0005874522564 0.000452
|
||||
942 10701.298929 2511.736415 109 11.3433320000004 0.00666699999965 0.99964986172101 0.000587540383 0.000436
|
||||
943 10712.632262 2511.743082 106 11.3333329999987 0.00666700000011 0.9987686833363 0.00058754038304 0.000424
|
||||
944 10723.83226 2511.749748 102 11.1999980000001 0.00666600000022 0.98701831630911 0.0005874522564 0.000408
|
||||
945 10735.052259 2511.753082 99 11.2199990000008 0.003334 0.98878093745826 0.00029381425484 0.000396
|
||||
946 10746.385592 2511.759748 97 11.3333330000005 0.00666599999977 0.99876868333646 0.00058745225636 0.000388
|
||||
947 10757.748924 2511.766415 92 11.363331999999 0.00666700000011 1.00141239474332 0.00058754038304 0.000368
|
||||
948 10769.118923 2511.769748 89 11.3699990000005 0.00333300000011 1.00199993512648 0.0002937261282 0.000356
|
||||
949 10780.338921 2511.776415 83 11.2199980000005 0.00666699999965 0.98878084933158 0.000587540383 0.000332
|
||||
950 10791.542254 2511.779748 78 11.2033329999995 0.00333300000011 0.98731221869055 0.0002937261282 0.000312
|
||||
951 10802.898919 2511.786415 78 11.3566649999993 0.00666700000011 1.00082485436032 0.00058754038304 0.000312
|
||||
952 10814.235585 2511.789748 75 11.3366660000011 0.00333300000011 0.99906240946469 0.0002937261282 0.0003
|
||||
953 10825.568917 2511.793082 74 11.3333320000002 0.003334 0.99876859520977 0.00029381425484 0.000296
|
||||
954 10836.818916 2511.796415 71 11.2499989999997 0.00333299999966 0.99142473699181 0.00029372612816 0.000284
|
||||
955 10848.042248 2511.803082 68 11.2233319999996 0.00666700000011 0.98907466358634 0.00058754038304 0.000272
|
||||
956 10859.368914 2511.806415 65 11.3266660000008 0.00333300000011 0.99818114295346 0.0002937261282 0.00026
|
||||
957 10870.715579 2511.809748 61 11.3466649999991 0.00333300000011 0.99994358784909 0.0002937261282 0.000244
|
||||
958 10882.035578 2511.813082 57 11.3199990000012 0.003334 0.99759360257046 0.00029381425484 0.000228
|
||||
959 10893.29891 2511.816415 52 11.2633319999986 0.00333299999966 0.99259972963112 0.00029372612816 0.000208
|
||||
960 10904.515576 2511.819748 49 11.2166660000003 0.00333300000011 0.98848721133003 0.0002937261282 0.000196
|
||||
961 10915.842241 2511.823082 49 11.3266650000005 0.003334 0.99818105482678 0.00029381425484 0.000196
|
||||
962 10927.188907 2511.826415 47 11.3466659999995 0.00333300000011 0.99994367597577 0.0002937261282 0.000188
|
||||
963 10938.505572 2511.829748 45 11.3166650000003 0.00333300000011 0.99729978831554 0.0002937261282 0.00018
|
||||
964 10949.772238 2511.833082 40 11.2666659999995 0.003334 0.99289354388604 0.00029381425484 0.00016
|
||||
965 10960.98557 2511.833082 40 11.2133320000012 0 0.98819339707527 0 0.00016
|
||||
966 10972.298902 2511.836415 38 11.3133319999997 0.00333300000011 0.9970060621873 0.0002937261282 0.000152
|
||||
967 10983.642234 2511.839748 36 11.3433320000004 0.00333299999966 0.99964986172101 0.00029372612816 0.000144
|
||||
968 10994.9589 2511.839748 32 11.3166659999988 0 0.99729987644206 0 0.000128
|
||||
969 11006.195566 2511.843082 30 11.2366660000007 0.003334 0.9902497443525 0.00029381425484 0.00012
|
||||
970 11017.398898 2511.846415 27 11.2033319999991 0.00333300000011 0.98731213056387 0.0002937261282 0.000108
|
||||
971 11028.68223 2511.846415 24 11.2833320000009 0 0.99436226265376 0 9.6E-05
|
||||
972 11040.025562 2511.849748 23 11.3433320000004 0.00333300000011 0.99964986172101 0.0002937261282 9.2E-05
|
||||
973 11051.368894 2511.849748 21 11.3433319999986 0 0.99964986172085 0 8.4E-05
|
||||
974 11062.622227 2511.853082 20 11.2533330000006 0.003334 0.99171855124673 0.00029381425484 8E-05
|
||||
975 11073.828892 2511.853082 19 11.2066649999997 0 0.98760585669211 0 7.6E-05
|
||||
976 11085.108891 2511.853082 18 11.2799990000003 0 0.99406853652552 0 7.2E-05
|
||||
977 11096.462223 2511.856415 13 11.3533320000006 0.00333300000011 1.00053112823225 0.0002937261282 5.2E-05
|
||||
978 11107.785555 2511.856415 10 11.3233319999999 0 0.99788732869854 0 4E-05
|
||||
979 11119.065554 2511.856415 9 11.2799990000003 0 0.99406853652552 0 3.6E-05
|
||||
980 11130.28222 2511.859748 8 11.2166659999984 0.00333299999966 0.98848721132987 0.00029372612816 3.2E-05
|
||||
981 11141.548885 2511.859748 7 11.266665000001 0 0.99289345575952 0 2.8E-05
|
||||
982 11152.898884 2511.859748 6 11.349999 0 1.00023740210401 0 2.4E-05
|
||||
983 11164.21555 2511.859748 4 11.3166660000006 0 0.99729987644222 0 1.6E-05
|
||||
984 11175.455549 2511.859748 2 11.2399989999994 0 0.99054347048058 0 8E-06
|
||||
985 11186.648881 2511.859748 0 11.1933319999989 0 0.98643086405264 0 0
|
||||
1144
data/stablePopulation.data
Normal file
1144
data/stablePopulation.data
Normal file
File diff suppressed because it is too large
Load diff
6
data/stablePopulation.sh
Executable file
6
data/stablePopulation.sh
Executable file
|
|
@ -0,0 +1,6 @@
|
|||
#!/bin/sh
|
||||
|
||||
zcat fullStablePopulation.data.gz \
|
||||
| nl \
|
||||
| awk 'NR == 0 || NR % 1000 == 0' \
|
||||
> stablePopulation.data
|
||||
50
default.nix
Normal file
50
default.nix
Normal file
|
|
@ -0,0 +1,50 @@
|
|||
with import <nixpkgs> {};
|
||||
|
||||
# My thesis-specific tools and utilities
|
||||
stdenv.mkDerivation {
|
||||
name = "thesis-bundle";
|
||||
buildInputs = [
|
||||
( texlive.combine {
|
||||
inherit (texlive)
|
||||
scheme-basic
|
||||
collection-langfrench
|
||||
algorithm2e
|
||||
biblatex
|
||||
caption
|
||||
enumitem
|
||||
euenc
|
||||
filehook
|
||||
jknapltx
|
||||
listings
|
||||
logreq
|
||||
metafont
|
||||
minitoc
|
||||
ms
|
||||
multirow
|
||||
pgf
|
||||
pgfplots
|
||||
placeins
|
||||
polyglossia
|
||||
relsize
|
||||
rsfs
|
||||
setspace
|
||||
siunitx
|
||||
standalone
|
||||
ucharcat
|
||||
unicode-math
|
||||
xcolor
|
||||
xetex
|
||||
xetex-def
|
||||
xkeyval
|
||||
xstring
|
||||
zapfding
|
||||
;} )
|
||||
biber
|
||||
(import ./builderbot {})
|
||||
];
|
||||
src=null;
|
||||
shellHook = ''
|
||||
mkdir -p /tmp/build-thesis
|
||||
echo "Juste type 'buildthesis' to build the thesis"
|
||||
'';
|
||||
}
|
||||
BIN
figures/BZ-reaction1.png
Normal file
BIN
figures/BZ-reaction1.png
Normal file
Binary file not shown.
|
After Width: | Height: | Size: 86 KiB |
BIN
figures/BZ-reaction2.png
Normal file
BIN
figures/BZ-reaction2.png
Normal file
Binary file not shown.
|
After Width: | Height: | Size: 88 KiB |
BIN
figures/BZ-reaction3.png
Normal file
BIN
figures/BZ-reaction3.png
Normal file
Binary file not shown.
|
After Width: | Height: | Size: 95 KiB |
BIN
figures/BZ-reaction4.png
Normal file
BIN
figures/BZ-reaction4.png
Normal file
Binary file not shown.
|
After Width: | Height: | Size: 91 KiB |
BIN
figures/EscherichiaColi.jpg
Normal file
BIN
figures/EscherichiaColi.jpg
Normal file
Binary file not shown.
|
After Width: | Height: | Size: 165 KiB |
BIN
figures/assembly01.png
Executable file
BIN
figures/assembly01.png
Executable file
Binary file not shown.
|
After Width: | Height: | Size: 3.4 KiB |
BIN
figures/assembly02.png
Executable file
BIN
figures/assembly02.png
Executable file
Binary file not shown.
|
After Width: | Height: | Size: 2.9 KiB |
BIN
figures/assembly03.png
Executable file
BIN
figures/assembly03.png
Executable file
Binary file not shown.
|
After Width: | Height: | Size: 3.4 KiB |
198
figures/bacteria.tikz
Normal file
198
figures/bacteria.tikz
Normal file
|
|
@ -0,0 +1,198 @@
|
|||
\documentclass[crop,tikz]{standalone}
|
||||
\input{common-headers}
|
||||
|
||||
\newcounter{bacteria}
|
||||
|
||||
\begin{document}
|
||||
|
||||
\tikzset{coord/.style={fill,inner sep=0.5mm, circle, black}}
|
||||
|
||||
\def \mybact#1#2#3#4#5{
|
||||
\stepcounter{bacteria};
|
||||
\coordinate (p#5) at #1; % position vector
|
||||
\coordinate (d#5) at #2; % direction vector
|
||||
\coordinate (n#5) at ($ (0,0)!1! 90:(d#5) $); % orthogonal vector
|
||||
\coordinate (ft#5) at ($ (p#5) + { #3+#4 }*(d#5) + #4*(n#5) $);
|
||||
\coordinate (fb#5) at ($ (p#5) + { #3+#4 }*(d#5) - #4*(n#5) $);
|
||||
\coordinate (bt#5) at ($ (p#5) + {-(#3+#4)}*(d#5) + #4*(n#5) $);
|
||||
\coordinate (bb#5) at ($ (p#5) + {-(#3+#4)}*(d#5) - #4*(n#5) $);
|
||||
\draw[black,rounded corners=#4cm]
|
||||
(bt#5) -- (bb#5) -- (fb#5) -- (ft#5) -- cycle;
|
||||
%
|
||||
\coordinate (f#5) at ($ (p#5) + #3*(d#5) $);
|
||||
\coordinate (b#5) at ($ (p#5) - #3*(d#5) $);
|
||||
% \node[coord,label=$p_{#5}$] at (p#5) {};
|
||||
\node[coord,label=below:$f_{#5}$] at (f#5) {};
|
||||
\node[coord,label=$b_{#5}$] at (b#5) {};
|
||||
%
|
||||
\coordinate (ff#5) at ($ (p#5) + {2*#3}*(d#5) $);
|
||||
\coordinate (bb#5) at ($ (p#5) - {2*#3}*(d#5) $);
|
||||
\draw[very thin] (ff#5) -- (bb#5);
|
||||
}
|
||||
|
||||
\begin{tikzpicture}
|
||||
%\draw [help lines] (-4,-2) grid (4,2);
|
||||
\coordinate (p) at (0,0); % position vector
|
||||
\coordinate (d) at ($ (0,0)!1! 33:(1,0) $); % direction vector
|
||||
\coordinate (n) at ($ (0,0)!1! 90:(d) $); % orthogonal vector
|
||||
\coordinate (ft) at ($ (p) + { 2+1 }*(d) + 1*(n) $);
|
||||
\coordinate (fb) at ($ (p) + { 2+1 }*(d) - 1*(n) $);
|
||||
\coordinate (bt) at ($ (p) + {-(2+1)}*(d) + 1*(n) $);
|
||||
\coordinate (bb) at ($ (p) + {-(2+1)}*(d) - 1*(n) $);
|
||||
\draw[black,rounded corners=1cm]
|
||||
(bt) -- (bb) -- (fb) -- (ft) -- cycle;
|
||||
\coordinate (f) at ($ (p) + 2*(d) $);
|
||||
\coordinate (b) at ($ (p) - 2*(d) $);
|
||||
%
|
||||
\node[coord,label=below:$f_{}$] at (f) {};
|
||||
\node[coord,label=$b_{}$] at (b) {};
|
||||
%
|
||||
\draw[|<->|,shorten >=3pt,shorten <=3pt,dashed] (f) to node[below] {$2l$} (b);
|
||||
\draw[|<->|,shorten >=1pt,shorten <=3pt,dashed] (b) to node[below] {$r$} +(180:1);
|
||||
\draw[|<->|,shorten >=1pt,shorten <=1pt,dashed] ($(p) + 0.8*(d)$) to node[right] {$r$} +(n);
|
||||
|
||||
\clip (-3,-2.5) rectangle (3,2.5);
|
||||
%\draw[black!50,nearly transparent] (-3,-2.5) rectangle (3,2.5);
|
||||
\end{tikzpicture}
|
||||
|
||||
\begin{tikzpicture}
|
||||
%\draw [help lines] (-4,-3) grid (4,5);
|
||||
\mybact{(0 ,3)}{($ (0,0)!1! 61:(1,0) $)}{2}{1}{1};
|
||||
\mybact{(0.4,0)}{($ (0,0)!1! 33:(1,0) $)}{2}{1}{2};
|
||||
|
||||
\coordinate (po) at ($ (b1)!(f2)!(f1) $);
|
||||
\draw[dashed] (f2) -- (po);
|
||||
%\draw[rotate=-9] (po) rectangle ++(1mm,-1mm);
|
||||
\node[coord,red,label=$\perp_{21}$] at (po) {};
|
||||
|
||||
\coordinate (pp) at ($ (b2)!(b1)!(f2) $);
|
||||
\draw[dashed] (b1) -- (pp);
|
||||
\node[coord,red,label=$\perp_{12}$] at (pp) {};
|
||||
|
||||
\coordinate (pq) at ($ (b2)!(f1)!(f2) $);
|
||||
\draw[dashed] (f1) -- (pq);
|
||||
\node[coord,red,label=$\perp_{12}$] at (pq) {};
|
||||
|
||||
\coordinate (pr) at ($ (b1)!(b2)!(f1) $);
|
||||
\draw[dashed] (b2) -- (pr);
|
||||
\node[coord,red,label=$\perp_{21}$] at (pr) {};
|
||||
\end{tikzpicture}
|
||||
|
||||
|
||||
% scalar_t r1 = bact1->r;
|
||||
% scalar_t r2 = bact2->r;
|
||||
% scalar_t l1 = bact1->l;
|
||||
% scalar_t l2 = bact2->l;
|
||||
|
||||
% scalar_t r = r1 + r2;
|
||||
% scalar_t rr = r * r;
|
||||
|
||||
% vector_t b1 = p1 - l1 * d1;
|
||||
% vector_t f1 = p1 + l1 * d1;
|
||||
% vector_t b2 = p2 - l2 * d2;
|
||||
% vector_t f2 = p2 + l2 * d2;
|
||||
|
||||
% scalar_t mu2_f1 = clamp (dot2D_2_2 (d2, f1 - p2), -l2, l2);
|
||||
% scalar_t mu2_b1 = clamp (dot2D_2_2 (d2, b1 - p2), -l2, l2);
|
||||
% scalar_t mu1_f2 = clamp (dot2D_2_2 (d1, f2 - p1), -l1, l1);
|
||||
% scalar_t mu1_b2 = clamp (dot2D_2_2 (d1, b2 - p1), -l1, l1);
|
||||
|
||||
% vector_t h2_f1 = p2 + mu2_f1 * d2;
|
||||
% vector_t h2_b1 = p2 + mu2_b1 * d2;
|
||||
% vector_t h1_f2 = p1 + mu1_f2 * d1;
|
||||
% vector_t h1_b2 = p1 + mu1_b2 * d1;
|
||||
|
||||
% vector_t nf1_2 = (h2_f1 - f1);
|
||||
% vector_t nb1_2 = (h2_b1 - b1);
|
||||
% vector_t n1_f2 = - (h1_f2 - f2);
|
||||
% vector_t n1_b2 = - (h1_b2 - b2);
|
||||
|
||||
% scalar_t dist2_mu2_f1 = dot2D_2_2 (nf1_2, nf1_2);
|
||||
% scalar_t dist2_mu2_b1 = dot2D_2_2 (nb1_2, nb1_2);
|
||||
% scalar_t dist2_mu1_f2 = dot2D_2_2 (n1_f2, n1_f2);
|
||||
% scalar_t dist2_mu1_b2 = dot2D_2_2 (n1_b2, n1_b2);
|
||||
|
||||
\begin{tikzpicture}
|
||||
\mybact{(0 ,3)}{($ (0,0)!1! 0:(1,0) $)}{2}{1}{1};
|
||||
\mybact{(1 ,0)}{($ (0,0)!1! 33:(1,0) $)}{2.2}{1.2}{2};
|
||||
\node[coord,label=$p_2$] at (p2) {};
|
||||
\draw[|->] (p2) -- ($ (b2)!(f1)!(f2) $);
|
||||
\end{tikzpicture}
|
||||
|
||||
\end{document}
|
||||
|
||||
% \begin{document}
|
||||
%
|
||||
% \tikzset{cell color/.style={black!20}}
|
||||
%
|
||||
% \newcommand{\common}{%
|
||||
% \coordinate (ll) at (0cm,-1cm);
|
||||
% \coordinate (ur) at (5cm, 3cm);
|
||||
% \draw (ll) rectangle (ur);
|
||||
% \clip (ll)+(0.1cm,0.1cm) rectangle ([shift={(-0.1cm,-0.1cm)}]ur);
|
||||
% }
|
||||
%
|
||||
% \begin{tikzpicture}[
|
||||
% every node/.style={draw, inner sep=0cm,
|
||||
% minimum width=10pt, minimum height=10pt},
|
||||
% arrowed/.style={-Stealth, out=-90, in=90}]
|
||||
% \common
|
||||
%
|
||||
% \node (h1) at (1,2) {};
|
||||
% \node (h2) at (2,2) {};
|
||||
% \node (h3) at (3,2) {};
|
||||
% \node (h4) at (4,2) {};
|
||||
%
|
||||
% \node (m1) at (1,1) {};
|
||||
% \node (m2) at (2,1) {};
|
||||
% \node (m3) at (3,1) {};
|
||||
% \node (m4) at (4,1) {};
|
||||
%
|
||||
% \node (b1) at (1,0) {};
|
||||
% \node (b2) at (2,0) {};
|
||||
% \node (b3) at (3,0) {};
|
||||
% \node (b4) at (4,0) {};
|
||||
%
|
||||
% \draw[arrowed] (h1) to (m2.north) (h3) to (m2.north) (h2) to (m2.north);
|
||||
% \draw[arrowed,dashed] (h2) to (m3.north) (h4) to (m3.north) (h3) to (m3.north);
|
||||
%
|
||||
% \draw[arrowed] (m1) to (b2.north) (m3) to (b2.north) (m2) to (b2.north);
|
||||
% \draw[arrowed,dashed] (m2) to (b3.north) (m4) to (b3.north) (m3) to (b3.north);
|
||||
% \end{tikzpicture}
|
||||
%
|
||||
% \begin{tikzpicture}[
|
||||
% c/.style={draw, inner sep=0cm,
|
||||
% minimum width=10pt, minimum height=10pt},
|
||||
% arrowed/.style={-Stealth, out=-90, in=90},
|
||||
% mix/.style={draw, circle, inner sep=1pt}]
|
||||
% \common
|
||||
%
|
||||
% \node[c] (h1) at (1,2) {};
|
||||
% \node[c] (h2) at (2,2) {};
|
||||
% \node[c] (h3) at (3,2) {};
|
||||
% \node[c] (h4) at (4,2) {};
|
||||
%
|
||||
% \node[mix] (q1) at (1.5,1.5) {};
|
||||
% \node[mix] (q2) at (3.5,1.5) {};
|
||||
%
|
||||
% \node[c] (m1) at (1,1) {};
|
||||
% \node[c] (m2) at (2,1) {};
|
||||
% \node[c] (m3) at (3,1) {};
|
||||
% \node[c] (m4) at (4,1) {};
|
||||
%
|
||||
% \node[mix] (q3) at (2.5,0.5) {};
|
||||
%
|
||||
% \node[c] (b1) at (1,0) {};
|
||||
% \node[c] (b2) at (2,0) {};
|
||||
% \node[c] (b3) at (3,0) {};
|
||||
% \node[c] (b4) at (4,0) {};
|
||||
%
|
||||
% \draw[arrowed] (h1) to (q1) (q1) to (m1);
|
||||
% \draw[arrowed] (h2) to (q1) (q1) to (m2);
|
||||
% \draw[arrowed] (h3) to (q2) (q2) to (m3);
|
||||
% \draw[arrowed] (h4) to (q2) (q2) to (m4);
|
||||
%
|
||||
% \draw[arrowed] (m2) to (q3) (q3) to (b2);
|
||||
% \draw[arrowed] (m3) to (q3) (q3) to (b3);
|
||||
% \end{tikzpicture}
|
||||
% \end{document}
|
||||
51
figures/bb-activity.tikz
Normal file
51
figures/bb-activity.tikz
Normal file
|
|
@ -0,0 +1,51 @@
|
|||
\documentclass[crop,tikz]{standalone}
|
||||
\input{common-headers}
|
||||
|
||||
\begin{document}
|
||||
|
||||
\begin{tikzpicture}[scale=0.4]
|
||||
\foreach \n [count=\y] in {%
|
||||
0000000100000000,%
|
||||
0000001111110000,%
|
||||
0000001111110000,%
|
||||
0000001111100000,%
|
||||
0000001110000000,%
|
||||
0000011100000000,%
|
||||
0001111110000000,%
|
||||
0001111111110000,%
|
||||
0001111111100000,%
|
||||
0000011000000000,%
|
||||
0000000000000000 }
|
||||
{
|
||||
\pgfmathtodigitlist{\digitlist}{\n};
|
||||
\foreach \digit [count=\x, evaluate={\c=\digit*100}] in \digitlist {
|
||||
\fill[fill=black!\c] (\x,-\y) rectangle ++(1,1);
|
||||
}
|
||||
}
|
||||
\coordinate (ul) at (0,0);
|
||||
\coordinate (lr) at (17,-11);
|
||||
\coordinate (bbul) at ($(ul) + (-10pt,10pt)$);
|
||||
\coordinate (bblr) at ($(lr) + (10pt,-10pt)$);
|
||||
\draw[very thick] (bbul) rectangle (bblr);
|
||||
\draw[black!50] (ul) grid ($(lr) + (0,-0.1pt)$);
|
||||
|
||||
% width indicator
|
||||
\pgfmathtodigitlist{\digitlist}{0001111111110000};
|
||||
\foreach \digit [count=\x, evaluate={\c=\digit*100}] in \digitlist {
|
||||
\fill[fill=black!\c] (\x,1) rectangle ++(1,1);
|
||||
}
|
||||
\draw[black!50] (0,1) grid (17,2);
|
||||
|
||||
% height indicator
|
||||
\pgfmathtodigitlist{\digitlist}{11111111110};
|
||||
\foreach \digit [count=\x, evaluate={\c=\digit*100}] in \digitlist {
|
||||
\fill[fill=black!\c] (18,-\x) rectangle ++(1,1);
|
||||
}
|
||||
\draw[black!50] (18,0) grid (19,-11);
|
||||
|
||||
\node[circle, fill=black, label=below left:{$(x,y)$}] at ($(ul) - (0,11) + (-10pt,-10pt)$) {};
|
||||
\draw[|.<->.|] (0,-12) -- node[midway,fill=white]{$w$} (17,-12);
|
||||
\draw[|.<->.|] (-1,-11) -- node[midway,fill=white]{$h$} (-1,0);
|
||||
\end{tikzpicture}
|
||||
|
||||
\end{document}
|
||||
BIN
figures/bench.pdf
Normal file
BIN
figures/bench.pdf
Normal file
Binary file not shown.
75
figures/ca-glider.tikz
Normal file
75
figures/ca-glider.tikz
Normal file
|
|
@ -0,0 +1,75 @@
|
|||
\documentclass[crop,tikz]{standalone}
|
||||
\input{common-headers}
|
||||
|
||||
\begin{document}
|
||||
|
||||
\newcommand{\common}{%
|
||||
\coordinate (ll) at (-0.5cm,-0.5cm);
|
||||
\coordinate (ur) at ( 3.5cm, 3.5cm);
|
||||
\draw[thick] (ll) rectangle (ur);
|
||||
\clip (ll)+(-0.1cm,-0.1cm) rectangle ([shift={(0.1cm,0.1cm)}]ur);
|
||||
}
|
||||
|
||||
\begin{tikzpicture}[
|
||||
cell/.style={fill=black!60, inner sep=0cm,
|
||||
minimum width=1cm, minimum height=1cm}]
|
||||
\common
|
||||
\node[cell] at (0cm,1cm) {};
|
||||
\node[cell] at (1cm,1cm) {};
|
||||
\node[cell] at (1cm,3cm) {};
|
||||
\node[cell] at (2cm,1cm) {};
|
||||
\node[cell] at (2cm,2cm) {};
|
||||
\draw[xshift=0.5cm,yshift=0.5cm] (ll) grid (ur);
|
||||
\end{tikzpicture}
|
||||
|
||||
\begin{tikzpicture}[
|
||||
cell/.style={fill=black!60, inner sep=0cm,
|
||||
minimum width=1cm, minimum height=1cm}]
|
||||
\common
|
||||
\node[cell] at (0cm,2cm) {};
|
||||
\node[cell] at (1cm,0cm) {};
|
||||
\node[cell] at (1cm,1cm) {};
|
||||
\node[cell] at (2cm,1cm) {};
|
||||
\node[cell] at (2cm,2cm) {};
|
||||
\draw[xshift=0.5cm,yshift=0.5cm] (ll) grid (ur);
|
||||
\end{tikzpicture}
|
||||
|
||||
\begin{tikzpicture}[
|
||||
cell/.style={fill=black!60, inner sep=0cm,
|
||||
minimum width=1cm, minimum height=1cm}]
|
||||
\common
|
||||
\node[cell] at (0cm,1cm) {};
|
||||
\node[cell] at (1cm,0cm) {};
|
||||
\node[cell] at (2cm,0cm) {};
|
||||
\node[cell] at (2cm,1cm) {};
|
||||
\node[cell] at (2cm,2cm) {};
|
||||
\draw[xshift=0.5cm,yshift=0.5cm] (ll) grid (ur);
|
||||
\end{tikzpicture}
|
||||
|
||||
\begin{tikzpicture}[
|
||||
cell/.style={fill=black!60, inner sep=0cm,
|
||||
minimum width=1cm, minimum height=1cm}]
|
||||
\common
|
||||
\node[cell] at (1cm,0cm) {};
|
||||
\node[cell] at (1cm,2cm) {};
|
||||
\node[cell] at (2cm,0cm) {};
|
||||
\node[cell] at (2cm,1cm) {};
|
||||
\node[cell] at (3cm,1cm) {};
|
||||
\draw[xshift=0.5cm,yshift=0.5cm] (ll) grid (ur);
|
||||
\end{tikzpicture}
|
||||
|
||||
\begin{tikzpicture}[
|
||||
cell/.style={fill=black!60, inner sep=0cm,
|
||||
minimum width=1cm, minimum height=1cm}]
|
||||
\common
|
||||
\node[cell] at (1cm,0cm) {};
|
||||
\node[cell] at (2cm,0cm) {};
|
||||
\node[cell] at (2cm,2cm) {};
|
||||
\node[cell] at (3cm,0cm) {};
|
||||
\node[cell] at (3cm,1cm) {};
|
||||
\draw[xshift=0.5cm,yshift=0.5cm] (ll) grid (ur);
|
||||
\end{tikzpicture}
|
||||
|
||||
|
||||
|
||||
\end{document}
|
||||
93
figures/ca-neighborhood-2D.tikz
Normal file
93
figures/ca-neighborhood-2D.tikz
Normal file
|
|
@ -0,0 +1,93 @@
|
|||
\documentclass[crop,tikz]{standalone}
|
||||
\input{common-headers}
|
||||
|
||||
\begin{document}
|
||||
|
||||
\newcommand{\common}{%
|
||||
\coordinate (ll) at (-1cm,-1cm);
|
||||
\coordinate (ur) at (3cm, 3cm);
|
||||
\draw (ll) rectangle (ur);
|
||||
\clip (ll)+(0.1cm,0.1cm) rectangle ([shift={(-0.1cm,-0.1cm)}]ur);
|
||||
}
|
||||
|
||||
\begin{tikzpicture}[
|
||||
every node/.style={draw, black!30, inner sep=0cm,
|
||||
minimum width=10pt, minimum height=10pt},
|
||||
cell/.style={black,fill=black},
|
||||
neig/.style={black}]
|
||||
\common
|
||||
|
||||
\node (h1) at (0,2) {};
|
||||
\node[neig] (h2) at (1,2) {};
|
||||
\node (h3) at (2,2) {};
|
||||
|
||||
\node[neig] (m1) at (0,1) {};
|
||||
\node[cell] (m2) at (1,1) {};
|
||||
\node[neig] (m3) at (2,1) {};
|
||||
|
||||
\node (b1) at (0,0) {};
|
||||
\node[neig] (b2) at (1,0) {};
|
||||
\node (b3) at (2,0) {};
|
||||
|
||||
\draw (m2) -- (h2);
|
||||
\draw (m2) -- (m1);
|
||||
\draw (m2) -- (m3);
|
||||
\draw (m2) -- (b2);
|
||||
\end{tikzpicture}
|
||||
|
||||
\begin{tikzpicture}[
|
||||
every node/.style={draw, black!30, inner sep=0cm,
|
||||
minimum width=10pt, minimum height=10pt},
|
||||
cell/.style={black,fill=black},
|
||||
neig/.style={black}]
|
||||
\common
|
||||
|
||||
\node (h1) at (0,2) {};
|
||||
\node[neig] (h2) at (1,2) {};
|
||||
\node[neig] (h3) at (2,2) {};
|
||||
|
||||
\node[neig] (m1) at (0,1) {};
|
||||
\node[cell] (m2) at (1,1) {};
|
||||
\node[neig] (m3) at (2,1) {};
|
||||
|
||||
\node[neig] (b1) at (0,0) {};
|
||||
\node[neig] (b2) at (1,0) {};
|
||||
\node (b3) at (2,0) {};
|
||||
|
||||
\draw (m2) -- (h2);
|
||||
\draw (m2) -- (m1);
|
||||
\draw (m2) -- (m3);
|
||||
\draw (m2) -- (b2);
|
||||
\draw (m2) -- (b1);
|
||||
\draw (m2) -- (h3);
|
||||
\end{tikzpicture}
|
||||
|
||||
\begin{tikzpicture}[
|
||||
every node/.style={draw, black!30, inner sep=0cm,
|
||||
minimum width=10pt, minimum height=10pt},
|
||||
cell/.style={black,fill=black},
|
||||
neig/.style={black}]
|
||||
\common
|
||||
|
||||
\node[neig] (h1) at (0,2) {};
|
||||
\node[neig] (h2) at (1,2) {};
|
||||
\node[neig] (h3) at (2,2) {};
|
||||
|
||||
\node[neig] (m1) at (0,1) {};
|
||||
\node[cell] (m2) at (1,1) {};
|
||||
\node[neig] (m3) at (2,1) {};
|
||||
|
||||
\node[neig] (b1) at (0,0) {};
|
||||
\node[neig] (b2) at (1,0) {};
|
||||
\node[neig] (b3) at (2,0) {};
|
||||
|
||||
\draw (m2) -- (m1);
|
||||
\draw (m2) -- (m3);
|
||||
\draw (m2) -- (b1);
|
||||
\draw (m2) -- (b2);
|
||||
\draw (m2) -- (b3);
|
||||
\draw (m2) -- (h1);
|
||||
\draw (m2) -- (h2);
|
||||
\draw (m2) -- (h3);
|
||||
\end{tikzpicture}
|
||||
\end{document}
|
||||
78
figures/ca-neighborhood.tikz
Normal file
78
figures/ca-neighborhood.tikz
Normal file
|
|
@ -0,0 +1,78 @@
|
|||
\documentclass[crop,tikz]{standalone}
|
||||
\input{common-headers}
|
||||
|
||||
\begin{document}
|
||||
|
||||
\tikzset{cell color/.style={black!20}}
|
||||
|
||||
\newcommand{\common}{%
|
||||
\coordinate (ll) at (0cm,-1cm);
|
||||
\coordinate (ur) at (5cm, 3cm);
|
||||
\draw (ll) rectangle (ur);
|
||||
\clip (ll)+(0.1cm,0.1cm) rectangle ([shift={(-0.1cm,-0.1cm)}]ur);
|
||||
}
|
||||
|
||||
\begin{tikzpicture}[
|
||||
every node/.style={draw, inner sep=0cm,
|
||||
minimum width=10pt, minimum height=10pt},
|
||||
arrowed/.style={-Stealth, out=-90, in=90}]
|
||||
\common
|
||||
|
||||
\node (h1) at (1,2) {};
|
||||
\node (h2) at (2,2) {};
|
||||
\node (h3) at (3,2) {};
|
||||
\node (h4) at (4,2) {};
|
||||
|
||||
\node (m1) at (1,1) {};
|
||||
\node (m2) at (2,1) {};
|
||||
\node (m3) at (3,1) {};
|
||||
\node (m4) at (4,1) {};
|
||||
|
||||
\node (b1) at (1,0) {};
|
||||
\node (b2) at (2,0) {};
|
||||
\node (b3) at (3,0) {};
|
||||
\node (b4) at (4,0) {};
|
||||
|
||||
\draw[arrowed] (h1) to (m2.north) (h3) to (m2.north) (h2) to (m2.north);
|
||||
\draw[arrowed,dashed] (h2) to (m3.north) (h4) to (m3.north) (h3) to (m3.north);
|
||||
|
||||
\draw[arrowed] (m1) to (b2.north) (m3) to (b2.north) (m2) to (b2.north);
|
||||
\draw[arrowed,dashed] (m2) to (b3.north) (m4) to (b3.north) (m3) to (b3.north);
|
||||
\end{tikzpicture}
|
||||
|
||||
\begin{tikzpicture}[
|
||||
c/.style={draw, inner sep=0cm,
|
||||
minimum width=10pt, minimum height=10pt},
|
||||
arrowed/.style={-Stealth, out=-90, in=90},
|
||||
mix/.style={draw, circle, inner sep=1pt}]
|
||||
\common
|
||||
|
||||
\node[c] (h1) at (1,2) {};
|
||||
\node[c] (h2) at (2,2) {};
|
||||
\node[c] (h3) at (3,2) {};
|
||||
\node[c] (h4) at (4,2) {};
|
||||
|
||||
\node[mix] (q1) at (1.5,1.5) {};
|
||||
\node[mix] (q2) at (3.5,1.5) {};
|
||||
|
||||
\node[c] (m1) at (1,1) {};
|
||||
\node[c] (m2) at (2,1) {};
|
||||
\node[c] (m3) at (3,1) {};
|
||||
\node[c] (m4) at (4,1) {};
|
||||
|
||||
\node[mix] (q3) at (2.5,0.5) {};
|
||||
|
||||
\node[c] (b1) at (1,0) {};
|
||||
\node[c] (b2) at (2,0) {};
|
||||
\node[c] (b3) at (3,0) {};
|
||||
\node[c] (b4) at (4,0) {};
|
||||
|
||||
\draw[arrowed] (h1) to (q1) (q1) to (m1);
|
||||
\draw[arrowed] (h2) to (q1) (q1) to (m2);
|
||||
\draw[arrowed] (h3) to (q2) (q2) to (m3);
|
||||
\draw[arrowed] (h4) to (q2) (q2) to (m4);
|
||||
|
||||
\draw[arrowed] (m2) to (q3) (q3) to (b2);
|
||||
\draw[arrowed] (m3) to (q3) (q3) to (b3);
|
||||
\end{tikzpicture}
|
||||
\end{document}
|
||||
65
figures/cc.tikz
Normal file
65
figures/cc.tikz
Normal file
|
|
@ -0,0 +1,65 @@
|
|||
\documentclass{standalone}
|
||||
\input{common-headers}
|
||||
\input{sigles}
|
||||
\begin{document}
|
||||
\begin{tikzpicture}[scale=0.9,
|
||||
shf/.style={isosceles triangle, shape border rotate=90, minimum height=0.5cm,
|
||||
minimum width=.7cm, fill=red!30!white, isosceles triangle stretches},
|
||||
she/.style={fill=black, rectangle, inner xsep=0.3cm, inner ysep=0.06cm},
|
||||
shc/.style={fill=black, circle, inner sep=0.1cm},
|
||||
2cell/.style={fill=red!30!white},
|
||||
1cell/.style={draw=black, ultra thick},
|
||||
0cell/.style={shape=circle, fill=black, draw=white, ultra thick, inner sep=0.1cm}]
|
||||
|
||||
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
|
||||
% Figure on the left
|
||||
\begin{scope}[xshift=-6cm, yshift=1.55cm,every node/.style={draw=white, ultra thick, inner sep=0}]
|
||||
%nodes
|
||||
\node[shf] (f) [label=above:$f$] {};
|
||||
\node[she] (e2) [label=right:$e_2$,below=of f] {};
|
||||
\node[she] (e1) [label=right:$e_1$,left=of e2] {};
|
||||
\node[she] (e3) [label=right:$e_3$,right=of e2] {};
|
||||
\node[shc] (c2) [label=below:$c_2$,below=of e1] {};
|
||||
\node[shc] (c1) [label=below:$c_1$,below=of e2] {};
|
||||
\node[shc] (c3) [label=below:$c_3$,below=of e3] {};
|
||||
|
||||
%incidence
|
||||
\draw (f) -- (e1);\draw (f) -- (e2);\draw (f) -- (e3);
|
||||
\draw (e1) -- (c1);\draw (e1) -- (c2);
|
||||
\draw (e2) -- (c2);\draw (e2) -- (c3);
|
||||
\draw (e3) -- (c1);\draw (e3) -- (c3);
|
||||
\end{scope}
|
||||
|
||||
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
|
||||
% Figure on the center
|
||||
\begin{scope}[scale=0.8]
|
||||
\fill[2cell] (90:2cm) -- (210:2cm) -- (330:2cm);
|
||||
\node at (0,0) {$f$};
|
||||
\end{scope}
|
||||
|
||||
\draw[1cell] (90 :2cm) -- node[above left] {$e_1$} (210:2cm);
|
||||
\draw[1cell] (210:2cm) -- node[below] {$e_2$} (330:2cm);
|
||||
\draw[1cell] (330:2cm) -- node[above right] {$e_3$} ( 90:2cm);
|
||||
|
||||
\node[0cell,label=above:$c_1$] at ( 90:2cm) {};
|
||||
\node[0cell,label=left:$c_2$] at (210:2cm) {};
|
||||
\node[0cell,label=right:$c_3$] at (330:2cm) {};
|
||||
|
||||
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
|
||||
% Figure on the right
|
||||
\begin{scope}[xshift=6cm]
|
||||
\begin{scope}[scale=0.8]
|
||||
\fill[2cell] (90:2cm) -- (210:2cm) -- (330:2cm);
|
||||
\node at (0,0) {$12$};
|
||||
\end{scope}
|
||||
|
||||
\draw[1cell] (90 :2cm) -- node[above left] {$5$} (210:2cm);
|
||||
\draw[1cell] (210:2cm) -- node[below] {$6$} (330:2cm);
|
||||
\draw[1cell] (330:2cm) -- node[above right] {$5$} ( 90:2cm);
|
||||
|
||||
\node[0cell,label=above:{$(0,4)$}] at ( 90:2cm) {};
|
||||
\node[0cell,label=below:{$(-3,0)$}] at (210:2cm) {};
|
||||
\node[0cell,label=below:{$(3,0)$}] at (330:2cm) {};
|
||||
\end{scope}
|
||||
\end{tikzpicture}
|
||||
\end{document}
|
||||
BIN
figures/cellcomplex2.pdf
Normal file
BIN
figures/cellcomplex2.pdf
Normal file
Binary file not shown.
55
figures/cellcomplex2.pdf_t
Normal file
55
figures/cellcomplex2.pdf_t
Normal file
|
|
@ -0,0 +1,55 @@
|
|||
\begin{picture}(0,0)%
|
||||
\includegraphics{cellcomplex2.pdf}%
|
||||
\end{picture}%
|
||||
\setlength{\unitlength}{4144sp}%
|
||||
%
|
||||
\begingroup\makeatletter\ifx\SetFigFont\undefined%
|
||||
\gdef\SetFigFont#1#2#3#4#5{%
|
||||
\reset@font\fontsize{#1}{#2pt}%
|
||||
\fontfamily{#3}\fontseries{#4}\fontshape{#5}%
|
||||
\selectfont}%
|
||||
\fi\endgroup%
|
||||
\begin{picture}(7181,1938)(-1708,-1030)
|
||||
\put(2476,-961){\makebox(0,0)[lb]{\smash{{\SetFigFont{12}{14.4}{\familydefault}{\mddefault}{\updefault}{\color[rgb]{0,0,0}$c_2$}%
|
||||
}}}}
|
||||
\put(676,-961){\makebox(0,0)[rb]{\smash{{\SetFigFont{12}{14.4}{\familydefault}{\mddefault}{\updefault}{\color[rgb]{0,0,0}$c_3$}%
|
||||
}}}}
|
||||
\put(2521,614){\makebox(0,0)[lb]{\smash{{\SetFigFont{12}{14.4}{\familydefault}{\mddefault}{\updefault}{\color[rgb]{0,0,0}$f$}%
|
||||
}}}}
|
||||
\put(2071,-16){\makebox(0,0)[lb]{\smash{{\SetFigFont{12}{14.4}{\rmdefault}{\mddefault}{\updefault}{\color[rgb]{0,0,0}$e_1$}%
|
||||
}}}}
|
||||
\put(1576,749){\makebox(0,0)[b]{\smash{{\SetFigFont{12}{14.4}{\familydefault}{\mddefault}{\updefault}{\color[rgb]{0,0,0}$c_1$}%
|
||||
}}}}
|
||||
\put(1081,-16){\makebox(0,0)[rb]{\smash{{\SetFigFont{12}{14.4}{\rmdefault}{\mddefault}{\updefault}{\color[rgb]{0,0,0}$e_3$}%
|
||||
}}}}
|
||||
\put(1576,-961){\makebox(0,0)[b]{\smash{{\SetFigFont{12}{14.4}{\familydefault}{\mddefault}{\updefault}{\color[rgb]{0,0,0}$e_2$}%
|
||||
}}}}
|
||||
\put(3601,-961){\makebox(0,0)[rb]{\smash{{\SetFigFont{12}{14.4}{\familydefault}{\mddefault}{\updefault}{\color[rgb]{0,0,0}$(-3,0)$}%
|
||||
}}}}
|
||||
\put(4501,749){\makebox(0,0)[b]{\smash{{\SetFigFont{12}{14.4}{\familydefault}{\mddefault}{\updefault}{\color[rgb]{0,0,0}$(0,4)$}%
|
||||
}}}}
|
||||
\put(5446,614){\makebox(0,0)[lb]{\smash{{\SetFigFont{12}{14.4}{\familydefault}{\mddefault}{\updefault}{\color[rgb]{0,0,0}$12$}%
|
||||
}}}}
|
||||
\put(4501,-961){\makebox(0,0)[b]{\smash{{\SetFigFont{12}{14.4}{\familydefault}{\mddefault}{\updefault}{\color[rgb]{0,0,0}$6$}%
|
||||
}}}}
|
||||
\put(4996,-16){\makebox(0,0)[lb]{\smash{{\SetFigFont{12}{14.4}{\familydefault}{\mddefault}{\updefault}{\color[rgb]{0,0,0}$5$}%
|
||||
}}}}
|
||||
\put(4006,-16){\makebox(0,0)[rb]{\smash{{\SetFigFont{12}{14.4}{\familydefault}{\mddefault}{\updefault}{\color[rgb]{0,0,0}$5$}%
|
||||
}}}}
|
||||
\put(5401,-961){\makebox(0,0)[lb]{\smash{{\SetFigFont{12}{14.4}{\familydefault}{\mddefault}{\updefault}{\color[rgb]{0,0,0}$(3,0)$}%
|
||||
}}}}
|
||||
\put(-899,749){\makebox(0,0)[b]{\smash{{\SetFigFont{12}{14.4}{\familydefault}{\mddefault}{\updefault}{\color[rgb]{0,0,0}$f$}%
|
||||
}}}}
|
||||
\put(-224,-961){\makebox(0,0)[b]{\smash{{\SetFigFont{12}{14.4}{\familydefault}{\mddefault}{\updefault}{\color[rgb]{0,0,0}$c_3$}%
|
||||
}}}}
|
||||
\put(-899,-961){\makebox(0,0)[b]{\smash{{\SetFigFont{12}{14.4}{\familydefault}{\mddefault}{\updefault}{\color[rgb]{0,0,0}$c_1$}%
|
||||
}}}}
|
||||
\put(-1574,-961){\makebox(0,0)[b]{\smash{{\SetFigFont{12}{14.4}{\familydefault}{\mddefault}{\updefault}{\color[rgb]{0,0,0}$c_2$}%
|
||||
}}}}
|
||||
\put(-764,-106){\makebox(0,0)[lb]{\smash{{\SetFigFont{12}{14.4}{\familydefault}{\mddefault}{\updefault}{\color[rgb]{0,0,0}$e_2$}%
|
||||
}}}}
|
||||
\put(-89,-106){\makebox(0,0)[lb]{\smash{{\SetFigFont{12}{14.4}{\rmdefault}{\mddefault}{\updefault}{\color[rgb]{0,0,0}$e_3$}%
|
||||
}}}}
|
||||
\put(-1439,-106){\makebox(0,0)[lb]{\smash{{\SetFigFont{12}{14.4}{\rmdefault}{\mddefault}{\updefault}{\color[rgb]{0,0,0}$e_1$}%
|
||||
}}}}
|
||||
\end{picture}%
|
||||
100
figures/cnn-synapses.tikz
Normal file
100
figures/cnn-synapses.tikz
Normal file
|
|
@ -0,0 +1,100 @@
|
|||
\documentclass[crop,tikz]{standalone}
|
||||
\input{common-headers}
|
||||
\usetikzlibrary{circuits.logic.CDH}
|
||||
\usetikzlibrary{decorations.markings}
|
||||
\usepackage{ifthen}
|
||||
|
||||
\newcommand{\gimmelegs}[1]{%
|
||||
\draw[black!50,densely dash dot] (#1.east) -- +( 4mm,0cm);
|
||||
\draw (#1.input 1) -- +(-4mm,0cm);
|
||||
\draw[black!50,densely dash dot] (#1.input 2) -- +(-4mm,0cm);
|
||||
\ifthenelse{\equal{\detokenize{#1}}{\detokenize{cell}}}{}{%
|
||||
\node[xshift=-3mm,fill,circle,inner sep=1pt] (in#1) at (#1.input 1) {};
|
||||
}
|
||||
}
|
||||
|
||||
\begin{document}
|
||||
|
||||
% Sum inputs
|
||||
\begin{tikzpicture}[circuit logic CDH, node distance=20mm]
|
||||
\node (cell) [and gate,fill=black!50] {}; \gimmelegs{cell}
|
||||
\node (celle) [and gate,right=of cell] {}; \gimmelegs{celle}
|
||||
\node (cellse) [and gate,below=of celle] {}; \gimmelegs{cellse}
|
||||
\node (cells) [and gate,below=of cell] {}; \gimmelegs{cells}
|
||||
\node (cellsw) [and gate,left=of cells] {}; \gimmelegs{cellsw}
|
||||
\node (cellw) [and gate,left=of cell] {}; \gimmelegs{cellw}
|
||||
\node (cellnw) [and gate,above=of cellw] {}; \gimmelegs{cellnw}
|
||||
\node (celln) [and gate,above=of cell] {}; \gimmelegs{celln}
|
||||
\node (cellne) [and gate,above=of celle] {}; \gimmelegs{cellne}
|
||||
|
||||
\node[white,fill=black,circle,inner sep=1pt]
|
||||
(hub) at (barycentric cs:cell=1,cellnw=1) {$\sum$};
|
||||
|
||||
\begin{scope}[decoration={markings,mark=at position 0.5 with {\arrow{Stealth}}}]
|
||||
% Let's go to the hub
|
||||
\draw[postaction={decorate},out=-90,in=130] (incellnw) to (hub);
|
||||
\draw[postaction={decorate},out=-90,in=90] (incelln) to (hub);
|
||||
\draw[postaction={decorate},out=-90,in=40] (incellne) to (hub);
|
||||
\draw[postaction={decorate},out=90 ,in=10,looseness=0.5] (incelle) to (hub);
|
||||
\draw[postaction={decorate},out=90 ,in=-20] (incellse) to (hub);
|
||||
\draw[postaction={decorate},out=90 ,in=160] (incellw) to (hub);
|
||||
\draw[postaction={decorate},out=90 ,in=200,looseness=1.5] (incellsw) to (hub);
|
||||
\draw[postaction={decorate},out=90 ,in=-120] (incells) to (hub);
|
||||
|
||||
% Then feedback my cell
|
||||
\draw[postaction={decorate},thick,out=-70 ,in=90] (hub) to (cell.north);
|
||||
\end{scope}
|
||||
|
||||
\begin{scope}[on background layer]
|
||||
\draw[thin] ($ (cell.center) + (-4cm,-3.5cm) $)
|
||||
rectangle ($ (cell.center) + ( 4cm, 3.5cm) $);
|
||||
\end{scope}
|
||||
\end{tikzpicture}
|
||||
|
||||
|
||||
|
||||
\renewcommand{\gimmelegs}[1]{%
|
||||
\draw (#1.east) -- +(4mm,0cm);
|
||||
\draw[black!50,densely dash dot] (#1.input 1) -- +(-4mm,0cm);
|
||||
\draw[black!50,densely dash dot] (#1.input 2) -- +(-4mm,0cm);
|
||||
\ifthenelse{\equal{\detokenize{#1}}{\detokenize{cell}}}{}{%
|
||||
\node[xshift=2mm,fill,circle,inner sep=1pt] (out#1) at (#1.output) {};
|
||||
}
|
||||
}
|
||||
|
||||
% Sum outputs
|
||||
\begin{tikzpicture}[circuit logic CDH, node distance=20mm]
|
||||
\node (cell) [and gate,fill=black!50] {}; \gimmelegs{cell}
|
||||
\node (celle) [and gate,right=of cell] {}; \gimmelegs{celle}
|
||||
\node (cellse) [and gate,below=of celle] {}; \gimmelegs{cellse}
|
||||
\node (cells) [and gate,below=of cell] {}; \gimmelegs{cells}
|
||||
\node (cellsw) [and gate,left=of cells] {}; \gimmelegs{cellsw}
|
||||
\node (cellw) [and gate,left=of cell] {}; \gimmelegs{cellw}
|
||||
\node (cellnw) [and gate,above=of cellw] {}; \gimmelegs{cellnw}
|
||||
\node (celln) [and gate,above=of cell] {}; \gimmelegs{celln}
|
||||
\node (cellne) [and gate,above=of celle] {}; \gimmelegs{cellne}
|
||||
|
||||
\node[white,fill=black,circle,inner sep=1pt]
|
||||
(hub) at (barycentric cs:cell=1,cellne=1) {$\sum$};
|
||||
|
||||
\begin{scope}[decoration={markings,mark=at position 0.5 with {\arrow{Stealth}}}]
|
||||
% Let's go to the hub
|
||||
\draw[postaction={decorate},out=-90,in=130] (outcellnw) to (hub);
|
||||
\draw[postaction={decorate},out=-90,in=90] (outcelln) to (hub);
|
||||
\draw[postaction={decorate},out=-90,in=40] (outcellne) to (hub);
|
||||
\draw[postaction={decorate},out=90 ,in=10] (outcelle) to (hub);
|
||||
\draw[postaction={decorate},out=90 ,in=-80,looseness=1.5] (outcellse) to (hub);
|
||||
\draw[postaction={decorate},out=90 ,in=160] (outcellw) to (hub);
|
||||
\draw[postaction={decorate},out=90 ,in=200,looseness=1.2] (outcellsw) to (hub);
|
||||
\draw[postaction={decorate},out=90 ,in=-100] (outcells) to (hub);
|
||||
|
||||
% Then feedback my cell
|
||||
\draw[postaction={decorate},thick,out=-120 ,in=90] (hub) to (cell.north);
|
||||
\end{scope}
|
||||
|
||||
\begin{scope}[on background layer]
|
||||
\draw[thin] ($ (cell.center) + (-4cm,-3.5cm) $)
|
||||
rectangle ($ (cell.center) + ( 4cm, 3.5cm) $);
|
||||
\end{scope}
|
||||
\end{tikzpicture}
|
||||
\end{document}
|
||||
96
figures/collision.tikz
Normal file
96
figures/collision.tikz
Normal file
|
|
@ -0,0 +1,96 @@
|
|||
\documentclass[crop,tikz]{standalone}
|
||||
\input{common-headers}
|
||||
\input{sigles}
|
||||
|
||||
\begin{document}
|
||||
\newcounter{bacteria}
|
||||
|
||||
\tikzset{coord/.style={fill,inner sep=0.5mm, circle, black}}
|
||||
|
||||
\def \mybact#1#2#3#4#5{
|
||||
\stepcounter{bacteria};
|
||||
\coordinate (p#5) at #1; % position vector
|
||||
\coordinate (d#5) at #2; % direction vector
|
||||
\coordinate (n#5) at ($ (0,0)!1! 90:(d#5) $); % orthogonal vector
|
||||
\coordinate (ft#5) at ($ (p#5) + { #3+#4 }*(d#5) + #4*(n#5) $);
|
||||
\coordinate (fb#5) at ($ (p#5) + { #3+#4 }*(d#5) - #4*(n#5) $);
|
||||
\coordinate (bt#5) at ($ (p#5) + {-(#3+#4)}*(d#5) + #4*(n#5) $);
|
||||
\coordinate (bb#5) at ($ (p#5) + {-(#3+#4)}*(d#5) - #4*(n#5) $);
|
||||
\draw[black,rounded corners=#4cm]
|
||||
(bt#5) -- (bb#5) -- (fb#5) -- (ft#5) -- cycle;
|
||||
%
|
||||
\coordinate (f#5) at ($ (p#5) + #3*(d#5) $);
|
||||
\coordinate (b#5) at ($ (p#5) - #3*(d#5) $);
|
||||
% \node[coord,label=$p_{#5}$] at (p#5) {};
|
||||
%
|
||||
\coordinate (ff#5) at ($ (p#5) + {2*#3}*(d#5) $);
|
||||
\coordinate (bb#5) at ($ (p#5) - {2*#3}*(d#5) $);
|
||||
\draw[very thin] (ff#5) -- (bb#5);
|
||||
}
|
||||
% Usage:
|
||||
% \mybact {|position vector|} {|direction vector|} {width}{height}{name};
|
||||
|
||||
\begin{tikzpicture}
|
||||
\draw [help lines] (0,0) grid (6,2);
|
||||
\mybact{(3,1)}{(1,0)}{2}{1}{\arabic{bacteria}};
|
||||
\node[coord,label=above:$f_\arabic{bacteria}$] at (f1) {};
|
||||
\node[coord,label=below:$b_\arabic{bacteria}$] at (b1) {};
|
||||
\end{tikzpicture}
|
||||
|
||||
\newcommand{\bactsPosAndAngle}{%
|
||||
\coordinate (PosA) at ( 0 ,3);
|
||||
\coordinate (AngA) at ($ (0,0) !1! 28:(1,0) $);
|
||||
\coordinate (PosB) at (-0.7,0);
|
||||
\coordinate (AngB) at ($ (0,0) !1! -3:(1,0) $);
|
||||
\mybact{(PosA)}{(AngA)}{2}{1}{1};
|
||||
\mybact{(PosB)}{(AngB)}{2}{1}{2};
|
||||
}
|
||||
|
||||
\begin{tikzpicture}
|
||||
\bactsPosAndAngle
|
||||
|
||||
\node[coord,label=above:$f_1$] at (f1) {};
|
||||
\node[coord,label=below:$f_2$] at (f2) {};
|
||||
\node[coord,label=below:$b_2$] at (b2) {};
|
||||
|
||||
\coordinate (po) at ($ (b1)!(f2)!(f1) $);
|
||||
\draw[dashed] (f2) -- (po);
|
||||
% \draw[rotate=-9] (po) rectangle ++(1mm,-1mm);
|
||||
\node[coord,red,label=above:$\perp_{f_2}$] at (po) {};
|
||||
|
||||
\coordinate (pp) at ($ (b2)!(b1)!(f2) $);
|
||||
\draw[dashed,thick,red] (b1) -- (pp);
|
||||
\node[coord,red,label=below:$\perp_{b_1}$] at (pp) {};
|
||||
|
||||
\coordinate (pq) at ($ (b2)!(f1)!(f2) $);
|
||||
\draw[dashed] (f1) -- (pq);
|
||||
\node[coord,label=$b_1$] at (b1) {};
|
||||
\node[coord,red,label=right:$\perp_{f_1}$] at (pq) {};
|
||||
|
||||
\coordinate (pr) at ($ (b1)!(b2)!(f1) $);
|
||||
\draw[dashed] (b2) -- (pr);
|
||||
\node[coord,red,label=above:$\perp_{f_2}$] at (pr) {};
|
||||
\end{tikzpicture}
|
||||
|
||||
\begin{tikzpicture}
|
||||
\bactsPosAndAngle
|
||||
|
||||
\coordinate (col) at ($(b1)!.5!(pp)$);
|
||||
|
||||
\node[coord] at (f1) {};
|
||||
\node[coord] at (f2) {};
|
||||
\node[coord] at (b2) {};
|
||||
\node[coord] at (b1) {};
|
||||
|
||||
\node[coord,red] at ($ (b2)!(b1)!(f2) $) {};
|
||||
%\node[coord,label=left:$P$] at (col) {};
|
||||
\node[coord,label=left:$p_1$] at (p1) {};
|
||||
\node[coord,label=below:$p_2$] at (p2) {};
|
||||
|
||||
\draw[-Stealth] (p1) to node[auto] {$\orr{r_1}$} (col);
|
||||
\draw[-Stealth] (p2) to node[auto,swap] {$\orr{r_2}$} (col);
|
||||
\draw[-Stealth] (col) to node[auto] {$\orr{n}$} ($(col)!.4!(b1)$);
|
||||
|
||||
\end{tikzpicture}
|
||||
|
||||
\end{document}
|
||||
315
figures/complexification-ehresmann.tikz
Normal file
315
figures/complexification-ehresmann.tikz
Normal file
|
|
@ -0,0 +1,315 @@
|
|||
\documentclass[crop,tikz]{standalone}
|
||||
\input{common-headers}
|
||||
\input{sigles}
|
||||
|
||||
\begin{document}
|
||||
|
||||
\tikzset{%
|
||||
neuron/.style={fill,black,circle,inner sep=0,minimum width=5pt},
|
||||
family/.style={draw,fill=white,circle,inner sep=0,minimum width=2cm},
|
||||
link/.style={-Stealth},
|
||||
transition/.style={thick, double,-Stealth},
|
||||
curly/.style={decorate,decoration={brace,amplitude=10pt}},
|
||||
curlyM/.style={decorate,decoration={brace,amplitude=10pt,mirror}},
|
||||
idq1/.style={magenta!60!white},
|
||||
idq2/.style={orange!60!white},
|
||||
idq3/.style={red!60!white},
|
||||
idn1/.style={fill,violet!70!white},
|
||||
idn2/.style={fill,blue!70!white},
|
||||
idn3/.style={fill,cyan!70!white},
|
||||
}
|
||||
|
||||
\begin{tikzpicture}
|
||||
\draw (-1,1) rectangle (1,-2);
|
||||
\node[neuron] (A1) at (0 ,0) {};
|
||||
\node[neuron] (B1) at (0.5 ,-1) {};
|
||||
\node[neuron] (C1) at (0.2 ,-1.5) {};
|
||||
\node[neuron] (D1) at (-0.5,-1.1) {};
|
||||
\draw[link] (A1) to (B1);
|
||||
\draw[link] (A1) to (D1);
|
||||
\draw[link] (C1) to (D1);
|
||||
\draw[link] (B1) to (D1);
|
||||
|
||||
\draw[transition] (1.5,-0.5) to node[auto] {$k_{t\rightarrow t'}$} (2.5,-0.5);
|
||||
|
||||
\begin{scope}[xshift=4cm]
|
||||
\draw (-1,1) rectangle (1,-2);
|
||||
\node[neuron] (A2) at (0 ,0) {};
|
||||
\node[neuron] (B2) at (0.5 ,-1) {};
|
||||
\node[neuron] (C2) at (0.2 ,-1.5) {};
|
||||
\node[neuron] (D2) at (-0.5,-1.1) {};
|
||||
\draw[link] (A2) to (B2);
|
||||
\draw[link] (A2) to (D2);
|
||||
\draw[link] (C2) to (D2);
|
||||
\draw[link] (B2) to (D2);
|
||||
|
||||
\draw[transition] (1.5,-0.5) to node[auto] {$k_{t'\rightarrow t''}$} (2.5,-0.5);
|
||||
\end{scope}
|
||||
|
||||
\begin{scope}[xshift=8cm]
|
||||
\draw (-1,1) rectangle (1,-2);
|
||||
\node[neuron] (A3) at (0 ,0) {};
|
||||
\node[neuron] (B3) at (0.5 ,-1) {};
|
||||
\node[neuron] (C3) at (0.2 ,-1.5) {};
|
||||
\draw[link] (A3) to (B3);
|
||||
\end{scope}
|
||||
|
||||
\draw[dashed] (-2.5cm,-2.5cm) -- +(0.5cm,0cm);
|
||||
\draw[dashed] ( 10cm,-2.5cm) -- +(0.5cm,0cm);
|
||||
\draw ( -2cm,-2.5cm) --
|
||||
( 10cm,-2.5cm);
|
||||
\begin{scope}[yshift=-2.5cm]
|
||||
\foreach \x/\t in {0/$t$,4/$t'$,8/$t''$}
|
||||
\draw (\x,1pt) -- (\x,-3pt) node[anchor=north] {\t};
|
||||
\end{scope}
|
||||
\end{tikzpicture}
|
||||
|
||||
\begin{tikzpicture}
|
||||
\node[neuron] (N1) at (0,0) {};
|
||||
\node[neuron] (N2) at (90:0.7cm) {};
|
||||
\node[neuron] (N3) at (10:0.5cm) {};
|
||||
\coordinate (Center) at (barycentric cs:N1=1,N2=1,N3=1);
|
||||
\draw[thin] (Center) circle (1cm);
|
||||
\node at ($(Center) + (-0.8,0)$) {$P$};
|
||||
|
||||
|
||||
\node[neuron] (N) at ($(Center) + ( 20:2.5cm)$) {};
|
||||
\node at ($(N.east) + (0.2,0)$) {$n_1$};
|
||||
\node[neuron] (D) at ($(Center) + (-20:2.5cm)$) {};
|
||||
\node at ($(D.east) + (0.2,0)$) {$n_2$};
|
||||
|
||||
\draw[dashed] ($(Center) + (90:1cm)$) to (N);
|
||||
\draw[dashed] ($(Center) + (-50:1cm)$) to (N);
|
||||
|
||||
\draw[link] (N1) to (N2);
|
||||
\draw[link] (N1) to (N3);
|
||||
\draw[link] (N) to node[auto] {$s_{12}$} (D);
|
||||
\draw[link] (N1) to (D);
|
||||
\draw[link] (N2) to (D);
|
||||
\draw[link] (N3) to (D);
|
||||
\end{tikzpicture}
|
||||
|
||||
\begin{tikzpicture}
|
||||
\node[neuron] (N1) at (0,0) {};
|
||||
\node[neuron] (N2) at (90:0.7cm) {};
|
||||
\node[neuron] (N3) at (10:0.5cm) {};
|
||||
\draw[link] (N1) to (N2);
|
||||
\draw[link] (N1) to (N3);
|
||||
|
||||
\coordinate (Center) at (barycentric cs:N1=1,N2=1,N3=1);
|
||||
\draw[thin] (Center) circle (1cm);
|
||||
\node at ($(Center) + (-0.8,0)$) {$P$};
|
||||
|
||||
\node[neuron] (N) at ($(Center) + ( 20:2.5cm)$) {};
|
||||
\node at ($(N.north) + (0,0.2)$) {$n$};
|
||||
|
||||
\draw[dashed] ($(Center) + (90:1cm)$) to (N);
|
||||
\draw[dashed] ($(Center) + (-50:1cm)$) to (N);
|
||||
|
||||
\coordinate (Center2) at ($(N) + (-20:2.5cm)$);
|
||||
|
||||
\node[neuron] (N1') at ($(Center2) + (0,0) $) {};
|
||||
\node[neuron] (N2') at ($(Center2) + (110:0.7cm)$) {};
|
||||
\node[neuron] (N3') at ($(Center2) + (30:0.5cm)$) {};
|
||||
\node[neuron] (N4') at ($(Center2) + (-130:0.5cm)$) {};
|
||||
|
||||
\draw[link] (N1') to (N2');
|
||||
\draw[link] (N1') to (N3');
|
||||
\draw[link] (N1') to (N4');
|
||||
\draw[link] (N2') to (N3');
|
||||
|
||||
\draw[thin] (Center2) circle (1cm);
|
||||
\node at ($(Center2) + (0.8,0)$) {$P'$};
|
||||
|
||||
\draw[dashed] ($(Center2) + ( 90:1cm)$) to (N);
|
||||
\draw[dashed] ($(Center2) + (-130:1cm)$) to (N);
|
||||
\end{tikzpicture}
|
||||
|
||||
|
||||
\begin{tikzpicture}
|
||||
\coordinate (cN1) at (0,0);
|
||||
\coordinate (cN2) at (90:0.7cm);
|
||||
\coordinate (cN3) at (10:0.5cm);
|
||||
\coordinate (Center) at (barycentric cs:N1=1,N2=1,N3=1);
|
||||
\coordinate (cN) at ($(Center) + ( 40:2.5cm)$);
|
||||
\coordinate (cN') at ($(cN) + (4cm,0)$);
|
||||
\coordinate (Center2) at ($(cN') + (-40:2.5cm)$);
|
||||
|
||||
%Cluster
|
||||
\fill[black!20] ($(Center) + (0,1cm)$) rectangle ($(Center2) + (0,-1cm)$);
|
||||
|
||||
|
||||
%Bindings
|
||||
\filldraw[white,draw=black,dashed,opacity=0.6] ($(Center) + (110:1cm)$)
|
||||
-- (cN)
|
||||
-- ($(Center) + (-30:1cm)$)
|
||||
-- cycle;
|
||||
\filldraw[white,draw=black,dashed,opacity=0.6] ($(Center2) + ( 70:1cm)$)
|
||||
-- (cN')
|
||||
-- ($(Center2) + (-150:1cm)$)
|
||||
-- cycle;
|
||||
|
||||
%Circles
|
||||
\filldraw[white,draw=black,thin] (Center) circle (1cm);
|
||||
\filldraw[white,draw=black,thin] (Center2) circle (1cm);
|
||||
|
||||
%IDs
|
||||
\node at ($(Center) + (-0.8,0)$) {$P$};
|
||||
\node at ($(Center2) + (0.8,0)$) {$P'$};
|
||||
|
||||
%Network P
|
||||
\node[neuron] (N1) at (cN1) {};
|
||||
\node[neuron] (N2) at (cN2) {};
|
||||
\node[neuron] (N3) at (cN3) {};
|
||||
\draw[link] (N1) to (N2);
|
||||
\draw[link] (N1) to (N3);
|
||||
|
||||
%Network P'
|
||||
\node[neuron] (N1') at ($(Center2) + (0,0) $) {};
|
||||
\node[neuron] (N2') at ($(Center2) + (110:0.7cm)$) {};
|
||||
\node[neuron] (N3') at ($(Center2) + (30:0.5cm)$) {};
|
||||
\node[neuron] (N4') at ($(Center2) + (-130:0.5cm)$) {};
|
||||
\draw[link] (N2') to (N1');
|
||||
\draw[link] (N1') to (N3');
|
||||
\draw[link] (N1') to (N4');
|
||||
\draw[link] (N3') to (N2');
|
||||
|
||||
%Cat-neurons
|
||||
\node[neuron,label=above:$n_1$] (N) at (cN) {};
|
||||
\node[neuron,label=above:$n_2$] (N') at (cN') {};
|
||||
\draw[link] (N) to node[auto]{\small{$(P,P')$}} (N');
|
||||
\end{tikzpicture}
|
||||
|
||||
|
||||
\begin{tikzpicture}
|
||||
\coordinate (Center) at (0,0);
|
||||
\coordinate (cN) at ($(Center) + ( 40:2.5cm)$);
|
||||
\coordinate (cM) at ($(cN) + (4cm,0)$);
|
||||
\coordinate (cN') at ($(cM) + (4cm,0)$);
|
||||
\coordinate (Center2) at ($(Center) + (4cm,0)$);
|
||||
\coordinate (Center3) at ($(cM) + (-40:2.5cm)$);
|
||||
\coordinate (Center4) at ($(Center3) + (4cm,0)$);
|
||||
|
||||
%Cluster
|
||||
\fill[black!20] ($(Center) + (0,1cm)$) rectangle ($(Center2) + (0,-1cm)$);
|
||||
\fill[black!20] ($(Center3) + (0,1cm)$) rectangle ($(Center4) + (0,-1cm)$);
|
||||
|
||||
%Bindings
|
||||
\filldraw[white,draw=black,dashed,opacity=0.6] ($(Center) + (110:1cm)$)
|
||||
-- (cN)
|
||||
-- ($(Center) + (-30:1cm)$)
|
||||
-- cycle;
|
||||
\filldraw[white,draw=black,dashed,opacity=0.6] ($(Center2) + (110:1cm)$)
|
||||
-- (cM)
|
||||
-- ($(Center2) + (-30:1cm)$)
|
||||
-- cycle;
|
||||
\filldraw[white,draw=black,dashed,opacity=0.6] ($(Center3) + ( 70:1cm)$)
|
||||
-- (cM)
|
||||
-- ($(Center3) + (-150:1cm)$)
|
||||
-- cycle;
|
||||
\filldraw[white,draw=black,dashed,opacity=0.6] ($(Center4) + ( 70:1cm)$)
|
||||
-- (cN')
|
||||
-- ($(Center4) + (-150:1cm)$)
|
||||
-- cycle;
|
||||
|
||||
%Neuron nets
|
||||
\node[family] at (Center) {$P$};
|
||||
\node[family] at (Center2) {$Q$};
|
||||
\node[family] at (Center3) {$Q'$};
|
||||
\node[family] at (Center4) {$P'$};
|
||||
|
||||
%Cat-neurons
|
||||
\node[neuron,label=above:$n_1$] (N) at (cN) {};
|
||||
\node[neuron,label=above:$n_2$] (N') at (cN') {};
|
||||
\node[neuron,label=above:$n_3$] (M) at (cM) {};
|
||||
\draw[link] (N) to node[auto]{\small{$(P,Q)$}} (M);
|
||||
\draw[link] (M) to node[auto]{\small{$(Q',P')$}} (N');
|
||||
\draw[link,bend left] (N) to (N');
|
||||
\end{tikzpicture}
|
||||
|
||||
\begin{tikzpicture}
|
||||
|
||||
\coordinate (Center) at (0,0);
|
||||
\coordinate (cN) at ($(Center) + ( 55:3cm)$);
|
||||
\coordinate (cM) at ($(cN) + (4cm,0)$);
|
||||
\coordinate (cN') at ($(cM) + (4cm,0)$);
|
||||
\coordinate (Center2) at ($(Center) + (4cm,0)$);
|
||||
\coordinate (Center3) at ($(cM) + (-55:3cm)$);
|
||||
\coordinate (Center4) at ($(Center3) + (4cm,0)$);
|
||||
|
||||
% Specific identity
|
||||
\coordinate (silb1) at ($(cN) + (-1cm,2cm)$);
|
||||
\coordinate (silb2) at ($(Center) + (-1.5cm,-2cm)$);
|
||||
\coordinate (corner1) at ($(cN') + (1cm,-0.5cm)$);
|
||||
\coordinate (corner2) at ($(Center4) + (1.5cm,1.5cm)$);
|
||||
\coordinate (lalb1) at ($(corner1) + (0,2.5cm)$);
|
||||
\coordinate (lalb2) at ($(corner2) + (0,-3.5cm)$);
|
||||
\coordinate (IQde) at ($(corner2) + (-1cm,0.1cm)$);
|
||||
\coordinate (IQa) at ($(corner1) + (0.1cm,1cm)$);
|
||||
\coordinate (centerSep) at (barycentric cs:cM=4,Center2=1,Center3=1);
|
||||
\coordinate (levelCue) at ($ (centerSep) + (-8cm,0cm) $);
|
||||
\coordinate (curlyCue) at ($ (centerSep) + (7cm,0cm) $);
|
||||
%\draw[thick] (silb1) rectangle (corner1);
|
||||
%\draw[thick] (silb2) rectangle (corner2);
|
||||
%\node at (silb1) [label=south east:{Identité spécifique}] {};
|
||||
%\node at (silb2) [label=north east:{Identité spécifique}] {};
|
||||
\node at (levelCue) [label=north east:{Niveau $n+1$},yshift=-1mm] {};
|
||||
\node at (levelCue) [label=south east:{Niveau $n$},yshift=1mm] {};
|
||||
|
||||
\draw[double] (levelCue) -- (curlyCue) -- ($ (curlyCue) + (3.2cm,0cm) $);
|
||||
|
||||
% Curlies
|
||||
\draw[curlyM] ($ (curlyCue) + (0cm,0.05cm) $) -- +(0cm,1.5cm)
|
||||
node (idnh) [midway,anchor=west,xshift=0.4cm] {Identité spécifique};
|
||||
\draw[curly ] ($ (curlyCue) + (0cm,-0.05cm) $) -- +(0cm,-3cm)
|
||||
node (idnb) [midway,anchor=west,xshift=0.4cm] {Identité spécifique};
|
||||
|
||||
%\draw[-Stealth, thick] ([xshift=-1cm]idnb.north) -- ([xshift=-1cm]idnh.south)
|
||||
%node [midway,auto,swap,text width={width("Identification")},align=center,
|
||||
%fill=white] {Identification\\ qualitative};
|
||||
|
||||
|
||||
%Cluster
|
||||
\fill[black,opacity=0.4] ($(Center) + (0,1cm)$) rectangle ($(Center2) + (0,-1cm)$);
|
||||
\fill[black,opacity=0.4] ($(Center3) + (0,1cm)$) rectangle ($(Center4) + (0,-1cm)$);
|
||||
|
||||
%Bindings
|
||||
\filldraw[idq1,dashed,opacity=0.6] ($(Center) + (110:1cm)$)
|
||||
-- (cN)
|
||||
-- ($(Center) + (-30:1cm)$)
|
||||
-- cycle;
|
||||
\filldraw[idq2,dashed,opacity=0.6] ($(Center2) + (110:1cm)$)
|
||||
-- (cM)
|
||||
-- ($(Center2) + (-30:1cm)$)
|
||||
-- cycle;
|
||||
\filldraw[idq2,dashed,opacity=0.6] ($(Center3) + ( 70:1cm)$)
|
||||
-- (cM)
|
||||
-- ($(Center3) + (-150:1cm)$)
|
||||
-- cycle;
|
||||
\filldraw[idq3,dashed,opacity=0.6] ($(Center4) + ( 70:1cm)$)
|
||||
-- (cN')
|
||||
-- ($(Center4) + (-150:1cm)$)
|
||||
-- cycle;
|
||||
|
||||
%Neuron nets
|
||||
\node[family,idq1] at (Center) {$P$};
|
||||
\node[family,idq2] at (Center2) {$Q$};
|
||||
\node[family,idq2] at (Center3) {$Q'$};
|
||||
\node[family,idq3] at (Center4) {$P'$};
|
||||
|
||||
%Cat-neurons
|
||||
\node[neuron,idq1,label=above:$n_1$] (N) at (cN) {};
|
||||
\node[neuron,idq2,label=above:$n_2$] (M) at (cM) {};
|
||||
\node[neuron,idq3,label=above:$n_3$] (N') at (cN') {};
|
||||
\draw[link] (N) to node[auto]{\small{$(P,Q)$}} (M);
|
||||
\draw[link] (M) to node[auto]{\small{$(Q',P')$}} (N');
|
||||
|
||||
% Identité numérique
|
||||
\begin{scope}[on background layer]
|
||||
\node[fit=(N) (M) (N'),inner sep=5mm,idn1,rounded corners] {};
|
||||
\node[fit=(Center) (Center2), inner sep=1.2cm,idn2,rounded corners] {};
|
||||
\node[fit=(Center3) (Center4), inner sep=1.2cm,idn3,rounded corners] {};
|
||||
\end{scope}
|
||||
\end{tikzpicture}
|
||||
|
||||
\end{document}
|
||||
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figures/dla-active000.png
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|
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figures/dla-active687.png
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figures/dla-active687.png
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|
After Width: | Height: | Size: 172 B |
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figures/dla-normal000.png
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figures/dla-normal000.png
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|
After Width: | Height: | Size: 171 B |
BIN
figures/dla-normal110.png
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figures/dla-normal110.png
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|
After Width: | Height: | Size: 465 B |
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figures/dla-normal687.png
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figures/dla-normal687.png
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|
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46
figures/ds2.tikz
Normal file
46
figures/ds2.tikz
Normal file
|
|
@ -0,0 +1,46 @@
|
|||
\documentclass{standalone}
|
||||
\input{common-headers}
|
||||
\input{sigles}
|
||||
\begin{document}
|
||||
\begin{tikzpicture}
|
||||
\draw (0,-1.0) node {$S$};
|
||||
\draw[thick,scale around={1.2:(1.5,1.5)}] (0,0) rectangle (3,3);
|
||||
\begin{scope}[dashed]
|
||||
\draw (1.1,1.1) rectangle (1.9,1.9);
|
||||
\draw (0,0) rectangle (0.9,1.9);
|
||||
\draw[rotate around={ 90:(1.5,1.5)}] (0,0) rectangle (0.9,1.9);
|
||||
\draw[rotate around={180:(1.5,1.5)}] (0,0) rectangle (0.9,1.9);
|
||||
\draw[rotate around={270:(1.5,1.5)}] (0,0) rectangle (0.9,1.9);
|
||||
\end{scope}
|
||||
\draw (1.5,-1.0) node {$s_1$};
|
||||
% Middle S
|
||||
\begin{scope}[xshift=4cm]
|
||||
\draw[thick,scale around={1.2:(1.5,1.5)}] (0,0) rectangle (3,3);
|
||||
\begin{scope}[dashed]
|
||||
\draw (1.1,1.1) rectangle (1.9,1.9);
|
||||
\draw (0,0) rectangle (1.9,0.9);
|
||||
\draw[rotate around={ 90:(1.5,1.5)}] (0,0) rectangle (1.9,0.9);
|
||||
\draw[rotate around={180:(1.5,1.5)}] (0,0) rectangle (1.9,0.9);
|
||||
\draw[rotate around={270:(1.5,1.5)}] (0,0) rectangle (1.9,0.9);
|
||||
\end{scope}
|
||||
\draw (1.5,-1.0) node {$s_2$};
|
||||
\end{scope}
|
||||
\draw (8.5,1.5) node {$\cdots$};
|
||||
% Right S
|
||||
\begin{scope}[xshift=10cm]
|
||||
\draw[thick,scale around={1.2:(1.5,1.5)}] (0,0) rectangle (3,3);
|
||||
\begin{scope}[dashed]
|
||||
\draw (1.1,1.1) rectangle (1.9,1.9);
|
||||
\draw (0,0) rectangle (0.9,0.9);
|
||||
\draw[rotate around={ 90:(1.5,1.5)}] (0,0) rectangle (0.9,0.9);
|
||||
\draw[rotate around={180:(1.5,1.5)}] (0,0) rectangle (0.9,0.9);
|
||||
\draw[rotate around={270:(1.5,1.5)}] (0,0) rectangle (0.9,0.9);
|
||||
\draw (1.1,0) rectangle ++(0.8,0.9);
|
||||
\draw[rotate around={ 90:(1.5,1.5)}] (1.1,0) rectangle ++(0.8,0.9);
|
||||
\draw[rotate around={180:(1.5,1.5)}] (1.1,0) rectangle ++(0.8,0.9);
|
||||
\draw[rotate around={270:(1.5,1.5)}] (1.1,0) rectangle ++(0.8,0.9);
|
||||
\end{scope}
|
||||
\draw (1.5,-1.0) node {$s_i$};
|
||||
\end{scope}
|
||||
\end{tikzpicture}
|
||||
\end{document}
|
||||
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|
After Width: | Height: | Size: 3.4 KiB |
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figures/evolution03.png
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figures/evolution03.png
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|
After Width: | Height: | Size: 3.7 KiB |
BIN
figures/fire-active05.png
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figures/fire-active05.png
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|
After Width: | Height: | Size: 176 B |
BIN
figures/fire-active22.png
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figures/fire-active22.png
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|
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figures/fire-active95.png
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figures/fire-active95.png
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|
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|
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figures/fire-normal22.png
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figures/fire-normal22.png
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|
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figures/fire-normal95.png
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figures/fire-normal95.png
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|
After Width: | Height: | Size: 1.1 KiB |
32
figures/fms.tikz
Normal file
32
figures/fms.tikz
Normal file
|
|
@ -0,0 +1,32 @@
|
|||
\documentclass[crop,tikz]{standalone}
|
||||
\input{common-headers}
|
||||
\input{sigles}
|
||||
|
||||
\begin{document}
|
||||
|
||||
\begin{tikzpicture}[scale=2,
|
||||
model/.style={draw},
|
||||
system/.style={draw},
|
||||
arrowed/.style={auto,-Stealth,shorten <=2pt,shorten >=2pt,bend angle=10},
|
||||
darowed/.style={auto,double,Stealth-Stealth,shorten <=2pt,shorten >=2pt},
|
||||
validate/.style={arrowed},
|
||||
validate2/.style={arrowed,dashed},
|
||||
annotation/.style={font=\scriptsize}]
|
||||
|
||||
\node[model] (F) at ( 1cm, 0) {Formalisme};
|
||||
\node[model] (M) at ( -1cm, 0) {Modèle};
|
||||
|
||||
\draw[validate] (F) to node[annotation,swap] {permet d'exprimer} (M);
|
||||
%\draw[validate,bend right] (M1) to node[annotation,swap] {validation} (W);
|
||||
|
||||
% Separation
|
||||
\draw[dashed] (-1.5cm,-0.5cm) to ( 2.5cm,-0.5cm);
|
||||
\coordinate (legend) at (2,-0.5cm);
|
||||
\node at (legend) [label=north:{Abstrait}] {};
|
||||
\node at (legend) [label=south:{Concret}] {};
|
||||
|
||||
\node[system] (S) at ( 0cm,-1cm) {Système};
|
||||
\draw[darowed] (M) to node[annotation,yshift=2pt] {explique} (S);
|
||||
\end{tikzpicture}
|
||||
|
||||
\end{document}
|
||||
BIN
figures/ftl01.png
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figures/ftl01.png
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|
After Width: | Height: | Size: 33 KiB |
BIN
figures/ftl02.png
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figures/ftl02.png
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|
After Width: | Height: | Size: 56 KiB |
BIN
figures/ftl03.png
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figures/ftl03.png
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|
After Width: | Height: | Size: 93 KiB |
BIN
figures/ftl04.png
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figures/ftl04.png
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|
After Width: | Height: | Size: 92 KiB |
BIN
figures/ftl05.png
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figures/ftl05.png
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|
After Width: | Height: | Size: 139 KiB |
35
figures/gbf.tikz
Normal file
35
figures/gbf.tikz
Normal file
|
|
@ -0,0 +1,35 @@
|
|||
\documentclass{standalone}
|
||||
\input{common-headers}
|
||||
\input{sigles}
|
||||
\begin{document}
|
||||
\begin{tikzpicture}
|
||||
\clip(-2,-2) rectangle (2,2);
|
||||
\begin{scope}[shift={(.5,.5)}]
|
||||
\draw[densely dotted] (-3,-3) grid (3,3);
|
||||
\end{scope}
|
||||
\draw[fill] (1,0) circle (1.5pt) node[right]
|
||||
{\GBF{e}};
|
||||
\draw[fill] (0,1) circle (1.5pt) node[above]
|
||||
{\GBF{n}};
|
||||
\draw[fill] (1,1) circle (1.5pt) node[above right]
|
||||
{\GBF{ne}};
|
||||
\draw[fill] (1,-1) circle (1.5pt) node[below right]
|
||||
{\GBF{se}};
|
||||
\draw[thick,->] (0,0) -- (1,0);
|
||||
\draw[thick,->] (0,0) -- (0,1);
|
||||
\draw[thick,->] (0,0) -- (1,1);
|
||||
\draw[thick,->] (0,0) -- (1,-1);
|
||||
\draw[fill] (-1,0) circle (1.5pt) node[left]
|
||||
{\GBF{w}};
|
||||
\draw[fill] (0,-1) circle (1.5pt) node[below]
|
||||
{\GBF{s}};
|
||||
\draw[fill] (-1,-1) circle (1.5pt) node[below left]
|
||||
{\GBF{sw}};
|
||||
\draw[fill] (-1,1) circle (1.5pt) node[above left]
|
||||
{\GBF{nw}};
|
||||
\draw[dashed,->] (0,0) -- (-1,-0);
|
||||
\draw[dashed,->] (0,0) -- (-0,-1);
|
||||
\draw[dashed,->] (0,0) -- (-1,-1);
|
||||
\draw[dashed,->] (0,0) -- (-1, 1);
|
||||
\end{tikzpicture}
|
||||
\end{document}
|
||||
6
figures/graph-neuron-models.tikz
Normal file
6
figures/graph-neuron-models.tikz
Normal file
|
|
@ -0,0 +1,6 @@
|
|||
\documentclass{standalone}
|
||||
\input{common-headers}
|
||||
\input{sigles}
|
||||
\begin{document}
|
||||
%stub
|
||||
\end{document}
|
||||
33
figures/link.tikz
Normal file
33
figures/link.tikz
Normal file
|
|
@ -0,0 +1,33 @@
|
|||
\documentclass{standalone}
|
||||
\input{common-headers}
|
||||
\input{sigles}
|
||||
\begin{document}
|
||||
|
||||
\begin{tikzpicture}[auto,
|
||||
mout/.style={->,shorten >=1pt, >=Stealth, semithick},
|
||||
leg/.style={inner sep=1pt,font=\scriptsize,yshift=-1pt}
|
||||
]
|
||||
\node (S) at (0cm, 0cm) {\includegraphics[width=2.5cm]{figures/operateursS} };
|
||||
\node (fS) at (3cm, 1.5cm) {\includegraphics[width=2.5cm]{figures/operateursfS} };
|
||||
\node (StfS) at (6cm, 1.5cm) {\includegraphics[width=2.5cm]{figures/operateursStfS}};
|
||||
\node (StS) at (3cm,-1.5cm) {\includegraphics[width=2.5cm]{figures/operateursStS} };
|
||||
\node (fStS) at (6cm,-1.5cm) {\includegraphics[width=2.5cm]{figures/operateursfStS}};
|
||||
\node (LkS) at (9cm, 0cm) {\includegraphics[width=2.5cm]{figures/operateursLkS} };
|
||||
|
||||
\node[leg] at (S.south) {$S$};
|
||||
\node[leg] at (fS.south) {$\fermeture{S}$};
|
||||
\node[leg] at (StS.south) {$\etoile{S}$};
|
||||
\node[leg] at (StfS.south) {$\etoile{\fermeture{S}}$};
|
||||
\node[leg] at (fStS.south) {$\fermeture{\etoile{S}}$};
|
||||
\node[leg] at (LkS.south) {$\liaison{S}$};
|
||||
|
||||
\draw [mout] (S) to [out = -60, in = 180] node [swap] {$\etoile{\textvisiblespace}$} (StS);
|
||||
\draw [mout] (S) to [out = 60, in = 180] node {$\fermeture{\textvisiblespace}$} (fS);
|
||||
\draw [mout] (fS) to [out = 60, in = 120] node [swap] {$\etoile{\textvisiblespace}$} (StfS);
|
||||
\draw [mout] (StS) to [out = -60, in =-120] node {$\fermeture{\textvisiblespace}$} (fStS);
|
||||
\draw [semithick] (StfS.east) to [out = 0, in = 180] (LkS.west);
|
||||
\draw [semithick] (fStS.east) to [out = 0, in = 180] (LkS.west);
|
||||
\node (LkSt) at (7cm,0cm) {$\textvisiblespace - \textvisiblespace$};
|
||||
\end{tikzpicture}
|
||||
|
||||
\end{document}
|
||||
BIN
figures/lks.png
Executable file
BIN
figures/lks.png
Executable file
Binary file not shown.
|
After Width: | Height: | Size: 13 KiB |
BIN
figures/log-steamer-bear.png
Normal file
BIN
figures/log-steamer-bear.png
Normal file
Binary file not shown.
|
After Width: | Height: | Size: 2.1 MiB |
273
figures/margolus.tikz
Normal file
273
figures/margolus.tikz
Normal file
|
|
@ -0,0 +1,273 @@
|
|||
\documentclass[crop,tikz]{standalone}
|
||||
\input{common-headers}
|
||||
|
||||
\begin{document}
|
||||
|
||||
\tikzset{cell color/.style={black!20}}
|
||||
|
||||
\newcommand{\common}{%
|
||||
\coordinate (ll) at (-2.5cm,-2.5cm);
|
||||
\coordinate (ur) at (2.5cm,2.5cm);
|
||||
\draw (ll) rectangle (ur);
|
||||
\clip (ll)+(0.1cm,0.1cm) rectangle ([shift={(-0.1cm,-0.1cm)}]ur);
|
||||
\fill[cell color] (ll) rectangle (ur);
|
||||
\draw[very thick, white] (ll) grid (ur);
|
||||
}
|
||||
|
||||
\begin{tikzpicture}
|
||||
\coordinate (ll) at (-2.5cm,-2.5cm);
|
||||
\coordinate (ur) at (2.5cm,2.5cm);
|
||||
\draw (ll) rectangle (ur);
|
||||
\clip (ll)+(0.1cm,0.1cm) rectangle ([shift={(-0.1cm,-0.1cm)}]ur);
|
||||
\fill[cell color] (ll) rectangle (ur);
|
||||
\draw[very thick, white, step=2cm] (ll) grid (ur);
|
||||
|
||||
\begin{scope}[xshift=-2.5cm,yshift=-2.5cm]
|
||||
\node at (1,1) {a1};
|
||||
\node at (1,2) {$\strut$a2};
|
||||
\node at (2,2) {$\strut$\underline{a3}};
|
||||
\node at (2,1) {a4};
|
||||
\draw[step=1cm, xshift=0.5cm, yshift=0.5cm] (0.1,0.1) grid (1.9,1.9);
|
||||
\node[opacity=0.5] at (1.5,1.5) {\Huge{A}};
|
||||
\end{scope}
|
||||
|
||||
\begin{scope}[xshift=-2.5cm,yshift=-0.5cm]
|
||||
\node at (1,1) {$\strut$b1};
|
||||
\node at (1,2) {b2};
|
||||
\node at (2,2) {b3};
|
||||
\node at (2,1) {$\strut$\underline{b4}};
|
||||
\draw[step=1cm, xshift=0.5cm, yshift=0.5cm] (0.1,0.1) grid (1.9,1.9);
|
||||
\node[opacity=0.5] at (1.5,1.5) {\Huge{B}};
|
||||
\end{scope}
|
||||
|
||||
\begin{scope}[xshift=-0.5cm,yshift=-0.5cm]
|
||||
\node at (1,1) {$\strut$\underline{c1}};
|
||||
\node at (1,2) {c2};
|
||||
\node at (2,2) {c3};
|
||||
\node at (2,1) {$\strut$c4};
|
||||
\draw[step=1cm, xshift=0.5cm, yshift=0.5cm] (0.1,0.1) grid (1.9,1.9);
|
||||
\node[opacity=0.5] at (1.5,1.5) {\Huge{C}};
|
||||
\end{scope}
|
||||
|
||||
\begin{scope}[xshift=-0.5cm,yshift=-2.5cm]
|
||||
\node at (1,1) {d1};
|
||||
\node at (1,2) {$\strut$\underline{d2}};
|
||||
\node at (2,2) {$\strut$d3};
|
||||
\node at (2,1) {d4};
|
||||
\draw[step=1cm, xshift=0.5cm, yshift=0.5cm] (0.1,0.1) grid (1.9,1.9);
|
||||
\node[opacity=0.5] at (1.5,1.5) {\Huge{D}};
|
||||
\end{scope}
|
||||
|
||||
\draw[very thick, step=4cm, xshift=2cm, yshift=2cm ] (ll) grid (ur);
|
||||
\end{tikzpicture}
|
||||
|
||||
\begin{tikzpicture}
|
||||
\common
|
||||
\draw[very thick, step=2cm] (ll) grid (ur);
|
||||
|
||||
\begin{scope}[xshift=-2.5cm,yshift=-2.5cm]
|
||||
\node at (1,1) {A};
|
||||
\node at (1,2) {B};
|
||||
\node at (2,2) {C};
|
||||
\node at (2,1) {D};
|
||||
\end{scope}
|
||||
|
||||
\end{tikzpicture}
|
||||
|
||||
\begin{tikzpicture}
|
||||
\common
|
||||
|
||||
\begin{scope}[xshift=-2.5cm,yshift=-2.5cm]
|
||||
\node (oG) at (0,0) {};
|
||||
\node (oH) at (0,1) {};
|
||||
\node (oI) at (0,2) {};
|
||||
\node (oJ) at (0,3) {};
|
||||
\node (oK) at (1,3) {};
|
||||
\node (oL) at (2,3) {};
|
||||
\node (oM) at (3,3) {};
|
||||
\node (oN) at (3,2) {};
|
||||
\node (oO) at (3,1) {};
|
||||
\node (oP) at (3,0) {};
|
||||
\node (oE) at (2,0) {};
|
||||
\node (oF) at (1,0) {};
|
||||
\end{scope}
|
||||
|
||||
\begin{scope}[xshift=-1cm,yshift=-1cm, scale=0.5,
|
||||
every node/.style={fill=black,inner sep=0, minimum size=0.5cm}]
|
||||
\clip (-2,-2) rectangle (2,2);
|
||||
\fill[cell color] (-2,-2) rectangle (2,2);
|
||||
\draw[step=1cm] (ll) grid (ur);
|
||||
\begin{scope}[scale=0.5, white]
|
||||
\node at (-1,-1) {A};
|
||||
\node at (-1, 1) {B};
|
||||
\node at ( 1, 1) {C};
|
||||
\node at ( 1,-1) {D};
|
||||
\end{scope}
|
||||
\draw[white] (-0.90,-0.90) grid (0.90,0.90);
|
||||
|
||||
\begin{scope}[shift={(-1.5,-1.5)},
|
||||
every node/.style={inner sep=0, minimum size=2pt}]
|
||||
\node (0) at ( 0, 0) {};
|
||||
\node (1) at ( 0, 3) {};
|
||||
\node (2) at ( 3, 3) {};
|
||||
\node (3) at ( 3, 0) {};
|
||||
\node (4) at ( 0, 1) {};
|
||||
\node (5) at ( 0, 2) {};
|
||||
\node (6) at ( 1, 3) {};
|
||||
\node (7) at ( 2, 3) {};
|
||||
\node (8) at ( 3, 2) {};
|
||||
\node (9) at ( 3, 1) {};
|
||||
\node (10) at ( 2, 0) {};
|
||||
\node (11) at ( 1, 0) {};
|
||||
\end{scope}
|
||||
\end{scope}
|
||||
\draw[very thick, step=2cm, black!50] (ll) grid (ur);
|
||||
\draw[very thick] (-2,-2) rectangle (0,0);
|
||||
|
||||
\draw[-stealth, thick] (oG.center) to (0.center);
|
||||
\draw[-stealth, thick] (oJ.center) to (1.center);
|
||||
\draw[-stealth, thick] (oM.center) to (2.center);
|
||||
\draw[-stealth, thick] (oP.center) to (3.center);
|
||||
\draw[-stealth, thick] [bend right] (oH.center) to (4.center);
|
||||
\draw[-stealth, thick] [bend left] (oI.center) to (5.center);
|
||||
\draw[-stealth, thick] [bend right] (oK.center) to (6.center);
|
||||
\draw[-stealth, thick] [bend left] (oL.center) to (7.center);
|
||||
\draw[-stealth, thick] [bend right] (oN.center) to (8.center);
|
||||
\draw[-stealth, thick] [bend left] (oO.center) to (9.center);
|
||||
\draw[-stealth, thick] [bend right] (oE.center) to (10.center);
|
||||
\draw[-stealth, thick] [bend left] (oF.center) to (11.center);
|
||||
|
||||
\end{tikzpicture}
|
||||
|
||||
\begin{tikzpicture}
|
||||
\common
|
||||
|
||||
\begin{scope}[xshift=-1cm,yshift=-1cm, scale=0.5,
|
||||
every node/.style={fill=black!50,inner sep=0, minimum size=0.5cm}]
|
||||
\clip (-2,-2) rectangle (2,2);
|
||||
\fill[cell color] (-2,-2) rectangle (2,2);
|
||||
\draw[step=1cm, black!50] (ll) grid (ur);
|
||||
\begin{scope}[scale=0.5, white]
|
||||
\node at (-1,-1) {A'};
|
||||
\node at (-1, 1) {B'};
|
||||
\node at ( 1, 1) {C'};
|
||||
\node at ( 1,-1) {D'};
|
||||
\end{scope}
|
||||
\end{scope}
|
||||
|
||||
\begin{scope}[xshift=1cm,yshift=1cm, scale=0.5,
|
||||
every node/.style={fill=black!50,inner sep=0, minimum size=0.5cm}]
|
||||
\clip (-2,-2) rectangle (2,2);
|
||||
\fill[cell color] (-2,-2) rectangle (2,2);
|
||||
\draw[step=1cm, black!50] (ll) grid ([shift={(-4,-4)}]ur);
|
||||
\begin{scope}[scale=0.5, white]
|
||||
\node at (-1,-1) {};
|
||||
\end{scope}
|
||||
\end{scope}
|
||||
|
||||
\begin{scope}[black!50]
|
||||
\draw[very thick] (-2,-2) rectangle (0,0);
|
||||
\draw[very thick] (0,0) rectangle (2,2);
|
||||
\end{scope}
|
||||
|
||||
\draw[very thick, step=2cm, xshift=1cm, yshift=1cm] (ll) grid (ur);
|
||||
|
||||
\end{tikzpicture}
|
||||
|
||||
\begin{tikzpicture}
|
||||
\common
|
||||
|
||||
\begin{scope}[xshift=-1cm,yshift=-1cm, scale=0.5,
|
||||
every node/.style={fill=black!50,inner sep=0, minimum size=0.5cm}]
|
||||
\clip (-2,-2) rectangle (2,2);
|
||||
\fill[cell color] (-2,-2) rectangle (2,2);
|
||||
\draw[step=1cm, black!50] (ll) grid (ur);
|
||||
\begin{scope}[scale=0.5, white]
|
||||
\node (A') at (-1,-1) {A'};
|
||||
\node (B') at (-1, 1) {B'};
|
||||
\node at ( 1, 1) {C'};
|
||||
\node (D') at ( 1,-1) {D'};
|
||||
\end{scope}
|
||||
\end{scope}
|
||||
|
||||
\begin{scope}[xshift=0cm,yshift=0cm, scale=0.5,
|
||||
every node/.style={fill=black!50,inner sep=0, minimum size=0.5cm}]
|
||||
\clip (-2,-2) rectangle (0,0);
|
||||
\fill[cell color] (-2,-2) rectangle (2,2);
|
||||
\draw[step=1cm, black!50] (ll) grid (ur);
|
||||
\begin{scope}[scale=0.5, white]
|
||||
\node at (-1,-1) {C'};
|
||||
\end{scope}
|
||||
\end{scope}
|
||||
|
||||
\begin{scope}[xshift=0cm,yshift=0cm, scale=0.5,
|
||||
every node/.style={fill=black!50,inner sep=0, minimum size=0.5cm}]
|
||||
\clip (0,0) rectangle (2,2);
|
||||
\fill[cell color] (-2,-2) rectangle (2,2);
|
||||
\draw[step=1cm, black!50] (ll) grid (ur);
|
||||
\begin{scope}[scale=0.5, white]
|
||||
\node at (1,1) {};
|
||||
\end{scope}
|
||||
\end{scope}
|
||||
|
||||
\begin{scope}[black!50]
|
||||
\draw[very thick] (-2,-2) rectangle (0,0);
|
||||
\draw[very thick] (0,0) rectangle (2,2);
|
||||
\end{scope}
|
||||
|
||||
\begin{scope}[scale=0.25,xshift=-2cm,yshift=-2cm,
|
||||
every node/.style={circle, inner sep=0, minimum size=2pt}]
|
||||
\node (A) at (-1,-1) {};
|
||||
\node (B) at (-1, 1) {};
|
||||
\node (D) at ( 1,-1) {};
|
||||
\draw[stealth-, thick] (A.center) to +( 225:2cm);
|
||||
\draw[stealth-, thick] (B.center) to [bend right] ([shift={(0,0.5)}]B'.center);
|
||||
\draw[stealth-, thick] (D.center) to [bend left ] ([shift={(0.5,0)}]D'.center);
|
||||
\end{scope}
|
||||
|
||||
\draw[very thick, step=2cm, xshift=1cm,yshift=1cm] (ll) grid (ur);
|
||||
|
||||
\end{tikzpicture}
|
||||
|
||||
\begin{tikzpicture}
|
||||
\common
|
||||
|
||||
\begin{scope}[xshift=-1cm,yshift=-1cm, scale=0.5,
|
||||
every node/.style={black!50, inner sep=0, minimum size=0.5cm},
|
||||
important/.style={white, fill=black!50}]
|
||||
\clip (-2,-2) rectangle (2,2);
|
||||
\fill[cell color] (-2,-2) rectangle (2,2);
|
||||
\draw[step=1cm, black!50] (ll) grid (ur);
|
||||
\begin{scope}[scale=0.5]
|
||||
\begin{scope}[shift={(-2,-2)}]
|
||||
\node[important] at (-1,-1) {A'};
|
||||
\node at (-1, 1) {B'};
|
||||
\node at ( 1, 1) {C'};
|
||||
\node at ( 1,-1) {D'};
|
||||
\end{scope}
|
||||
\begin{scope}[shift={(-2, 2)}]
|
||||
\node at (-1,-1) {A'};
|
||||
\node[important] at (-1, 1) {B'};
|
||||
\node at ( 1, 1) {C'};
|
||||
\node at ( 1,-1) {D'};
|
||||
\end{scope}
|
||||
\begin{scope}[shift={( 2, 2)}]
|
||||
\node at (-1,-1) {A'};
|
||||
\node at (-1, 1) {B'};
|
||||
\node[important] at ( 1, 1) {C'};
|
||||
\node at ( 1,-1) {D'};
|
||||
\end{scope}
|
||||
\begin{scope}[shift={( 2,-2)}]
|
||||
\node at (-1,-1) {A'};
|
||||
\node at (-1, 1) {B'};
|
||||
\node at ( 1, 1) {C'};
|
||||
\node[important] at ( 1,-1) {D'};
|
||||
\end{scope}
|
||||
\end{scope}
|
||||
\end{scope}
|
||||
|
||||
\draw[very thick, white] (ll) grid (ur);
|
||||
\draw[very thick, step=2cm, xshift=1cm,yshift=1cm] (ll) grid (ur);
|
||||
|
||||
\end{tikzpicture}
|
||||
\end{document}
|
||||
297
figures/model-categories.tikz
Normal file
297
figures/model-categories.tikz
Normal file
|
|
@ -0,0 +1,297 @@
|
|||
\documentclass[crop,tikz]{standalone}
|
||||
\input{common-headers}
|
||||
\input{sigles}
|
||||
|
||||
\begin{document}
|
||||
|
||||
%1
|
||||
\begin{tikzpicture}
|
||||
\node (A) at (0,0) {$\cat{A}$};
|
||||
\node (B) at (4,0) {$\cat{B}$};
|
||||
\node (C) at (2,0) {$\cat{C}$};
|
||||
\draw[-Stealth] (A) to node[auto] {$S$} (C);
|
||||
\draw[-Stealth] (B) to node[auto,swap] {$T$} (C);
|
||||
\end{tikzpicture}
|
||||
|
||||
%2
|
||||
\begin{tikzpicture}
|
||||
\node (sa1) at (0,2) {$S(\alpha)$};
|
||||
\node (sa2) at (2,2) {$S(\alpha')$};
|
||||
\node (tb2) at (2,0) {$T(\beta')$};
|
||||
\node (tb1) at (0,0) {$T(\beta)$};
|
||||
|
||||
\draw[-Stealth] (sa1) to node[auto] {$S(g)$} (sa2);
|
||||
\draw[-Stealth] (sa1) to node[auto,swap] {$f$} (tb1);
|
||||
\draw[-Stealth] (sa2) to node[auto] {$f'$} (tb2);
|
||||
\draw[-Stealth] (tb1) to node[auto,swap] {$T(h)$} (tb2);
|
||||
\end{tikzpicture}
|
||||
|
||||
%3
|
||||
\begin{tikzpicture}
|
||||
\node (M0) at (2,0) {$M_0$};
|
||||
\node (M1) at (1,2) {$M$};
|
||||
\node (M2) at (3,2) {$M'$};
|
||||
\draw[-Stealth] (M1) to node[auto,swap] {$v_{M}$} (M0);
|
||||
\draw[-Stealth] (M2) to node[auto] {$v_{M'}$} (M0);
|
||||
\draw[-Stealth] (M1) to node[auto] {$a$} (M2);
|
||||
\end{tikzpicture}
|
||||
|
||||
%4: Produit
|
||||
\begin{tikzpicture}[node distance=1cm and 2cm]
|
||||
\node (P) at (0,0) {$P$};
|
||||
\node (X) [left=of P] {$X$};
|
||||
\node (Y) [right=of P] {$Y$};
|
||||
\node (Q) [above=of P] {$Q$};
|
||||
|
||||
\draw[-Stealth] (P) to node[auto] {$p_1$} (X);
|
||||
\draw[-Stealth] (P) to node[auto,swap] {$p_2$} (Y);
|
||||
\draw[-Stealth] (Q) to node[auto,swap] {$p'_1$} (X);
|
||||
\draw[-Stealth] (Q) to node[auto] {$p'_2$} (Y);
|
||||
\draw[-Stealth,dashed] (Q) to node[auto] {$\exists ! u$} (P);
|
||||
\end{tikzpicture}
|
||||
|
||||
%5 Coproduit
|
||||
\begin{tikzpicture}[node distance=1cm and 2cm]
|
||||
\node (P) at (0,0) {$P$};
|
||||
\node (X) [left=of P] {$X$};
|
||||
\node (Y) [right=of P] {$Y$};
|
||||
\node (Q) [above=of P] {$Q$};
|
||||
|
||||
\draw[-Stealth] (X) to node[auto,swap] {$i_1$} (P);
|
||||
\draw[-Stealth] (Y) to node[auto] {$i_2$} (P);
|
||||
\draw[-Stealth] (X) to node[auto] {$i'_1$} (Q);
|
||||
\draw[-Stealth] (Y) to node[auto,swap] {$i'_2$} (Q);
|
||||
\draw[-Stealth,dashed] (P) to node[auto,swap] {$\exists ! u$} (Q);
|
||||
\end{tikzpicture}
|
||||
|
||||
%6 Produit fibré (1) aka Pullback
|
||||
\begin{tikzpicture}
|
||||
\node (X) at ( 0,0) {$X$};
|
||||
\node (Y) at ( 2,2) {$Y$};
|
||||
\node (Z) at ( 2,0) {$Z$};
|
||||
\node (P) at ( 0,2) {$P$};
|
||||
|
||||
\draw[-Stealth] (X) to node[auto,swap] {$f$} (Z);
|
||||
\draw[-Stealth] (Y) to node[auto] {$g$} (Z);
|
||||
\draw[-Stealth] (P) to node[auto,swap] {$p_1$} (X);
|
||||
\draw[-Stealth] (P) to node[auto] {$p_2$} (Y);
|
||||
\end{tikzpicture}
|
||||
|
||||
|
||||
%7 Produit fibré (2) Pullback
|
||||
\begin{tikzpicture}
|
||||
\node (X) at ( 0,0) {$X$};
|
||||
\node (Y) at ( 2,2) {$Y$};
|
||||
\node (Z) at ( 2,0) {$Z$};
|
||||
\node (P) at ( 0,2) {$P$};
|
||||
\node (Q) at (-1,3) {$Q$};
|
||||
|
||||
\draw[-Stealth] (X) to node[auto,swap] {$f$} (Z);
|
||||
\draw[-Stealth] (Y) to node[auto] {$g$} (Z);
|
||||
\draw[-Stealth] (P) to node[auto,swap] {$p_1$} (X);
|
||||
\draw[-Stealth] (P) to node[auto] {$p_2$} (Y);
|
||||
\draw[-Stealth,bend right] (Q) to node[auto,swap] {$p'_1$} (X);
|
||||
\draw[-Stealth,bend left] (Q) to node[auto] {$p'_2$} (Y);
|
||||
\draw[-Stealth,dashed] (Q) to node[auto] {$\exists ! u$} (P);
|
||||
\end{tikzpicture}
|
||||
|
||||
%8 Somme amalgamée (1) aka Pushout
|
||||
\begin{tikzpicture}
|
||||
\node (X) at ( 0,0) {$X$};
|
||||
\node (Y) at ( 2,2) {$Y$};
|
||||
\node (Z) at ( 2,0) {$Z$};
|
||||
\node (P) at ( 0,2) {$P$};
|
||||
|
||||
\draw[-Stealth] (Z) to node[auto] {$f$} (X);
|
||||
\draw[-Stealth] (Z) to node[auto,swap] {$g$} (Y);
|
||||
\draw[-Stealth] (X) to node[auto] {$i_1$} (P);
|
||||
\draw[-Stealth] (Y) to node[auto,swap] {$i_2$} (P);
|
||||
\end{tikzpicture}
|
||||
|
||||
%9 Somme amalgamée (2) aka Pushout
|
||||
\begin{tikzpicture}
|
||||
\node (X) at ( 0,0) {$X$};
|
||||
\node (Y) at ( 2,2) {$Y$};
|
||||
\node (Z) at ( 2,0) {$Z$};
|
||||
\node (P) at ( 0,2) {$P$};
|
||||
\node (Q) at (-1,3) {$Q$};
|
||||
|
||||
\draw[-Stealth] (Z) to node[auto] {$f$} (X);
|
||||
\draw[-Stealth] (Z) to node[auto,swap] {$g$} (Y);
|
||||
\draw[-Stealth] (X) to node[auto] {$i_1$} (P);
|
||||
\draw[-Stealth] (Y) to node[auto,swap] {$i_2$} (P);
|
||||
\draw[-Stealth,bend left] (X) to node[auto] {$i'_1$} (Q);
|
||||
\draw[-Stealth,bend right] (Y) to node[auto,swap] {$i'_2$} (Q);
|
||||
\draw[-Stealth,dashed] (P) to node[auto,swap] {$\exists ! u$} (Q);
|
||||
\end{tikzpicture}
|
||||
|
||||
%10 Slice catégorie
|
||||
\begin{tikzpicture}[node distance=1.2cm and 1cm]
|
||||
\node (X) at (0,0) {$X$};
|
||||
\node (Y1) [above left =of X] {$Y1$};
|
||||
\node (Y2) [above right=of X] {$Y2$};
|
||||
|
||||
\draw[-Stealth] (Y1) to node[auto] {$g$} (Y2);
|
||||
\draw[-Stealth] (Y1) to node[auto,swap] {$f_1$} (X);
|
||||
\draw[-Stealth] (Y2) to node[auto] {$f_2$} (X);
|
||||
\end{tikzpicture}
|
||||
|
||||
%11
|
||||
\begin{tikzpicture}
|
||||
\node (M1) at (-5,0) {$\model{M}{1}$};
|
||||
\node (M12) at (-3,0) {$\model{M}{12}$};
|
||||
\node (M2) at (-1,0) {$\model{M}{2}$};
|
||||
\node (M) at (-3,2) {$\modelM'$};
|
||||
|
||||
\node (equiv) at (0,0) {$\Leftrightarrow$};
|
||||
|
||||
\node (E1) at (1,0) {$E_{\model{M}{1}}$};
|
||||
\node (E12) at (3,0) {$E_{\model{M}{12}}$};
|
||||
\node (E2) at (5,0) {$E_{\model{M}{2}}$};
|
||||
\node (ER) at (3,-2) {$E_{\model{M}{S}}$};
|
||||
\node (EM) at (3,2) {$E_{\modelM'}$};
|
||||
|
||||
|
||||
\draw[-Stealth] (M12) to node[auto,swap] {$\absA_1$} (M1);
|
||||
\draw[-Stealth] (M12) to node[auto] {$\absA_2$} (M2);
|
||||
\draw[-Stealth,dashed] (M) to node[auto] {$\absA'$} (M12);
|
||||
\draw[-Stealth] (M) to node[auto,swap] {$\absA'_1$} (M1);
|
||||
\draw[-Stealth] (M) to node[auto] {$\absA'_2$} (M2);
|
||||
|
||||
\draw[-Stealth] (E1) to node[auto] {$f_{\absA_1}$} (E12);
|
||||
\draw[-Stealth] (E2) to node[auto,swap] {$f_{\absA_2}$} (E12);
|
||||
\draw[-Stealth,dashed] (E12) to node[auto,swap] {$f_{\absA'}$} (EM);
|
||||
\draw[-Stealth] (E1) to node[auto] {$f_{\absA'_1}$} (EM);
|
||||
\draw[-Stealth] (E2) to node[auto,swap] {$f_{\absA'_2}$} (EM);
|
||||
\draw[-Stealth] (ER) to node[auto] {$\sigma_{\model{M}{1}}$} (E1);
|
||||
\draw[-Stealth] (ER) to node[auto,swap] {$\sigma_{\model{M}{2}}$} (E2);
|
||||
\end{tikzpicture}
|
||||
|
||||
%12
|
||||
\begin{tikzpicture}
|
||||
\node (M1) at (-5,0) {$\model{M}{1}$};
|
||||
\node (M12) at (-3,2) {$\model{M}{12}^0$};
|
||||
\node (M2) at (-1,0) {$\model{M}{2}$};
|
||||
\node (M0) at (-3,0) {$\modelM_0$};
|
||||
|
||||
\node (equiv) at (0,0) {$\Leftrightarrow$};
|
||||
|
||||
\node (E1) at (1,0) {$E_{\model{M}{1}}$};
|
||||
\node (E12) at (3,2) {$E_{\model{M}{12}^0}$};
|
||||
\node (E2) at (5,0) {$E_{\model{M}{2}}$};
|
||||
\node (ER) at (3,-2) {$E_{\model{M}{S}}$};
|
||||
\node (EM) at (3,0) {$E_{\modelM_0}$};
|
||||
|
||||
\draw[-Stealth] (M12) to node[auto,swap] {$\absA_1$} (M1);
|
||||
\draw[-Stealth] (M12) to node[auto] {$\absA_2$} (M2);
|
||||
\draw[-Stealth] (M1) to node[auto] {$\absA^0_1$} (M0);
|
||||
\draw[-Stealth] (M2) to node[auto,swap] {$\absA^0_2$} (M0);
|
||||
|
||||
\draw[-Stealth] (E1) to node[auto] {$f_{\absA_1}$} (E12);
|
||||
\draw[-Stealth] (E2) to node[auto,swap] {$f_{\absA_2}$} (E12);
|
||||
\draw[-Stealth] (EM) to node[auto,swap] {$f_{\absA^0_1}$} (E1);
|
||||
\draw[-Stealth] (EM) to node[auto] {$f_{\absA^0_2}$} (E2);
|
||||
\draw[-Stealth] (ER) to node[auto] {$\sigma_{\model{M}{1}}$} (E1);
|
||||
\draw[-Stealth] (ER) to node[auto,swap] {$\sigma_{\model{M}{2}}$} (E2);
|
||||
\draw[-Stealth] (ER) to node[auto,swap] {$\sigma_{\model{M}{0}}$} (EM);
|
||||
\end{tikzpicture}
|
||||
|
||||
%13
|
||||
\begin{tikzpicture}
|
||||
\node (Mp) at (-3,1) {$\model{M}{+}$};
|
||||
\node (Mm) at (-1,1) {$\model{M}{-}$};
|
||||
\node (eq) at (0,1) {$\Leftrightarrow$};
|
||||
\node (Er) at (2,0) {$E_{\model{M}{S}}$};
|
||||
\node (Ep) at (1,2) {$E_{\model{M}{+}}$};
|
||||
\node (Em) at (3,2) {$E_{\model{M}{-}}$};
|
||||
\draw[-Stealth] (Mp) to node[auto] {$\absA$} (Mm);
|
||||
\draw[-Stealth] (Er) to node[auto] {$\sigma_{\model{M}{+}}$} (Ep);
|
||||
\draw[-Stealth] (Er) to node[auto,swap] {$\sigma_{\model{M}{-}}$} (Em);
|
||||
\draw[-Stealth] (Em) to node[auto,swap] {$f_\absA$} (Ep);
|
||||
\end{tikzpicture}
|
||||
|
||||
%14
|
||||
\begin{tikzpicture}
|
||||
\node (Mp) at (-3,2) {$\model{M}{+}$};
|
||||
\node (Mm) at (-1,2) {$\model{M}{-}$};
|
||||
\node (eq) at (0,2) {$\Leftrightarrow$};
|
||||
\node (Er) at (2,0) {$E_{\model{M}{S}}$};
|
||||
\node (Ep) at (1,2) {$E_{\model{M}{+}}$};
|
||||
\node (Em) at (3,2) {$E_{\model{M}{-}}$};
|
||||
\node (eq) at (4,2) {$\stackrel{\ftr{U}_\cat{AMon}}\mapsfrom$};
|
||||
\node (ap) at (5,2) {$\Phi_+$};
|
||||
\node (am) at (7,2) {$\Phi_-$};
|
||||
|
||||
\draw[-Stealth] (Mp) to node[auto] {$\absA$} (Mm);
|
||||
\draw[-Stealth] (Er) to node[auto] {$\sigma_{\model{M}{+}}$} (Ep);
|
||||
\draw[-Stealth] (Er) to node[auto,swap] {$\sigma_{\model{M}{-}}$} (Em);
|
||||
\draw[-Stealth] (Em) to node[auto,swap] {$f_\absA$} (Ep);
|
||||
\draw[-Stealth] (am) to node[auto,swap] {$h$} (ap);
|
||||
\end{tikzpicture}
|
||||
|
||||
%15
|
||||
\begin{tikzpicture}
|
||||
\node (M1) at (-2,0) {$\model{M}{1}$};
|
||||
\node (M12) at (0,0) {$\model{M}{12}$};
|
||||
\node (M2) at (2,0) {$\model{M}{2}$};
|
||||
\node (M) at (0,2) {$\modelM'$};
|
||||
|
||||
\draw[-Stealth] (M1) to node[auto] {$\absA_1$} (M12);
|
||||
\draw[-Stealth] (M2) to node[auto,swap] {$\absA_2$} (M12);
|
||||
\draw[-Stealth,dashed] (M12) to node[auto,swap] {$\absA'$} (M);
|
||||
\draw[-Stealth] (M1) to node[auto] {$\absA'_1$} (M);
|
||||
\draw[-Stealth] (M2) to node[auto,swap] {$\absA'_2$} (M);
|
||||
\end{tikzpicture}
|
||||
|
||||
%16
|
||||
\begin{tikzpicture}
|
||||
\node (M1) at (-2,0) {$E_{\model{M}{1}}$};
|
||||
\node (M12) at (0,0) {$E_{\model{M}{12}}$};
|
||||
\node (M2) at (2,0) {$E_{\model{M}{2}}$};
|
||||
\node (M) at (0,2) {$E_{\modelM'}$};
|
||||
\node (R) at (0,-2) {$E_{\model{M}{S}}$};
|
||||
|
||||
\draw[-Stealth] (M12) to node[auto,swap] {$f_{\absA_1}$} (M1);
|
||||
\draw[-Stealth] (M12) to node[auto] {$f_{\absA_2}$} (M2);
|
||||
\draw[-Stealth,dashed] (R) to node[auto,swap] {$\sigma_{\model{M}{12}}$} (M12);
|
||||
\draw[-Stealth] (R) to node[auto] {$\sigma_{\model{M}{1}}$} (M1);
|
||||
\draw[-Stealth] (R) to node[auto,swap] {$\sigma_{\model{M}{2}}$} (M2);
|
||||
\draw[-Stealth] (M) to node[auto,swap] {$f_{\absA'_1}$} (M1);
|
||||
\draw[-Stealth] (M) to node[auto] {$f_{\absA'_2}$} (M2);
|
||||
\draw[-Stealth,dashed] (M) to node[auto] {$f_{\absA'}$} (M12);
|
||||
\end{tikzpicture}
|
||||
|
||||
%17
|
||||
\begin{tikzpicture}
|
||||
\node (M1) at (-5,0) {$\model{M}{1}$};
|
||||
\node (M12) at (-3,0) {$\model{M}{12}^0$};
|
||||
\node (M2) at (-1,0) {$\model{M}{2}$};
|
||||
\node (M0) at (-3,2) {$\model{M}{0}$};
|
||||
|
||||
\node (equiv) at (0,0) {$\Leftrightarrow$};
|
||||
|
||||
\node (E1) at (1,0) {$E_{\model{M}{1}}$};
|
||||
\node (E12) at (3,0) {$E_{\model{M}{12}^0}$};
|
||||
\node (E2) at (5,0) {$E_{\model{M}{2}}$};
|
||||
\node (ER) at (3,-2) {$E_{\model{M}{S}}$};
|
||||
\node (EM) at (3,2) {$E_{\model{M}{0}}$};
|
||||
|
||||
|
||||
\draw[-Stealth] (M1) to node[auto] {$\absA_1$} (M12);
|
||||
\draw[-Stealth] (M2) to node[auto,swap] {$\absA_2$} (M12);
|
||||
%%\draw[-Stealth,dashed] (M0) to node[auto] {$\absA'$} (M12);
|
||||
\draw[-Stealth] (M0) to node[auto,swap] {$\absA^0_1$} (M1);
|
||||
\draw[-Stealth] (M0) to node[auto] {$\absA^0_2$} (M2);
|
||||
|
||||
\draw[-Stealth] (E12) to node[auto,swap] {$f_{\absA_1}$} (E1);
|
||||
\draw[-Stealth] (E12) to node[auto] {$f_{\absA_2}$} (E2);
|
||||
%\draw[-Stealth,dashed] (E12) to node[auto,swap] {$f_{\absA'}$} (EM);
|
||||
\draw[-Stealth] (E1) to node[auto] {$f_{\absA^0_1}$} (EM);
|
||||
\draw[-Stealth] (E2) to node[auto,swap] {$f_{\absA^0_2}$} (EM);
|
||||
\draw[-Stealth] (ER) to node[auto] {$\sigma_{\model{M}{1}}$} (E1);
|
||||
\draw[-Stealth] (ER) to node[auto,swap] {$\sigma_{\model{M}{2}}$} (E2);
|
||||
\draw[-Stealth,dashed] (ER) to node[auto,swap] {$\sigma_{\model{M}{12}^0}$} (E12);
|
||||
\end{tikzpicture}
|
||||
|
||||
|
||||
\end{document}
|
||||
66
figures/model-relations.tikz
Normal file
66
figures/model-relations.tikz
Normal file
|
|
@ -0,0 +1,66 @@
|
|||
\documentclass[crop,tikz]{standalone}
|
||||
\input{common-headers}
|
||||
\input{sigles}
|
||||
|
||||
\begin{document}
|
||||
|
||||
\begin{tikzpicture}[scale=2,
|
||||
model/.style={draw},
|
||||
system/.style={draw,circle},
|
||||
arrowed/.style={auto,-Stealth,shorten <=2pt,shorten >=2pt,bend angle=10},
|
||||
darowed/.style={auto,double,Stealth-Stealth,shorten <=2pt,shorten >=2pt},
|
||||
validate/.style={arrowed},
|
||||
validate2/.style={arrowed,dashed},
|
||||
annotation/.style={font=\scriptsize}]
|
||||
|
||||
\node[model] (M1) at ( 0, 0.7) {$\modelM$};
|
||||
\node[model] (W) at ( 0, 0) {$\model{M}{S}$};
|
||||
|
||||
\draw[validate] (M1) to node[annotation,swap] {validation $\sigma_{\modelM}$} (W);
|
||||
%\draw[validate,bend right] (M1) to node[annotation,swap] {validation} (W);
|
||||
|
||||
% Returning diagram
|
||||
%\draw[validate2,bend right] (W) to (M1);
|
||||
|
||||
% Separation
|
||||
\draw[dashed] (-1,-1) to [bend left=70] ( 1,-1);
|
||||
|
||||
\node[system] (S) at ( 0,-0.8) {$S$};
|
||||
\draw[darowed] (W) to node[annotation,yshift=2pt] {expériences/mesures} (S);
|
||||
\end{tikzpicture}
|
||||
|
||||
\begin{tikzpicture}[scale=2,
|
||||
model/.style={draw},
|
||||
system/.style={draw,circle},
|
||||
arrowed/.style={auto,-Stealth,shorten <=2pt,shorten >=2pt,bend angle=10},
|
||||
darowed/.style={auto,double,Stealth-Stealth,shorten <=2pt,shorten >=2pt},
|
||||
validate/.style={arrowed},
|
||||
validate2/.style={arrowed,dashed},
|
||||
abstract/.style={arrowed,thick},
|
||||
abstract2/.style={arrowed,dashed,thick},
|
||||
annotation/.style={font=\scriptsize}]
|
||||
|
||||
\node[model] (M1) at (-1, 1) {$E_{\model{M}{1}}$};
|
||||
%\node[model] (M2) at ( 0, 1) {$M_2$};
|
||||
\node[model] (M3) at ( 1, 1) {$E_{\model{M}{2}}$};
|
||||
\node[model] (W) at ( 0, 0) {$E_{\model{M}{S}}$};
|
||||
|
||||
\draw[validate,bend left] (W.west) to node[annotation,swap] {$\sigma_{\model{M}{1}}$} (M1.south);
|
||||
%\draw[validate] (M2) to node[annotation] {validation} (W.north);
|
||||
\draw[validate,bend right] (W.east) to node[annotation] {$\sigma_{\model{M}{2}}$} (M3.south);
|
||||
|
||||
\draw[abstract,bend left] (M1) to node[annotation,swap] {$a$} (M3);
|
||||
%\draw[abstract,bend left] (M2) to node[annotation] {abstraction} (M3);
|
||||
|
||||
% Returning diagram
|
||||
%\draw[abstract2,bend left] (M2) to (M1);
|
||||
%\draw[abstract2,bend left] (M3) to (M2);
|
||||
%\draw[validate2,bend right] (W.north west) to (M1);
|
||||
%\draw[validate2,bend left] (W.north east) to (M2);
|
||||
\end{tikzpicture}
|
||||
|
||||
\begin{tikzpicture}[scale=2]
|
||||
|
||||
\end{tikzpicture}
|
||||
|
||||
\end{document}
|
||||
31
figures/openGLPipeline.tikz
Normal file
31
figures/openGLPipeline.tikz
Normal file
|
|
@ -0,0 +1,31 @@
|
|||
\documentclass[crop,tikz]{standalone}
|
||||
\input{common-headers}
|
||||
|
||||
\begin{document}
|
||||
|
||||
\begin{tikzpicture}[%
|
||||
shader/.style={draw,fill=white,nearly opaque, minimum size=1.5cm,%
|
||||
align=center, node distance=5mm},
|
||||
prgrbl/.style={shader,opaque,thick,font=\bfseries},
|
||||
prgrbo/.style={prgrbl,dashed},
|
||||
f/.tip={Fast Triangle[cap angle=120]},
|
||||
>/.tip={Triangle Cap[cap angle=120] . f f}, % Normal tips
|
||||
>-</.tip={>[reversed]} % Reversed tips
|
||||
]
|
||||
\node[shader] (S1) at (0,0) {Vertex\\ Specification};
|
||||
\node[prgrbl,right=of S1] (S2) {Vertex\\ Shader};
|
||||
\node[prgrbo,right=of S2] (S3) {Tessellation};
|
||||
\node[prgrbo,right=of S3] (S4) {Geometry\\ Shader};
|
||||
\node[shader,right=of S4] (S5) {Vertex\\ Post-Processing};
|
||||
\node[shader,below=of S5] (S6) {Primitive\\ Assembly};
|
||||
\node[shader,left =of S6] (S7) {Rasterization};
|
||||
\node[prgrbo,left =of S7] (S8) {Fragment\\ Shader};
|
||||
\node[shader,left =of S8] (S9) {Per-Sample\\ Operations};
|
||||
\begin{scope}[on background layer]
|
||||
\draw[line width=1cm, >->,black!40,rounded corners]
|
||||
($(S1.center) + (-3cm,0)$) to (S5.center)%
|
||||
to (S6.center) to ($(S9.center) + (-3cm,0)$);
|
||||
\end{scope}
|
||||
\end{tikzpicture}
|
||||
|
||||
\end{document}
|
||||
49
figures/operateursLkS.tikz
Normal file
49
figures/operateursLkS.tikz
Normal file
|
|
@ -0,0 +1,49 @@
|
|||
\documentclass{standalone}
|
||||
\input{common-headers}
|
||||
\input{sigles}
|
||||
\begin{document}
|
||||
% Link de S
|
||||
\begin{tikzpicture}
|
||||
\input{operateurs}
|
||||
|
||||
\draw[1cell] (D.corner 1) -- (D.corner 2);
|
||||
\draw[1cell] (D.corner 2) -- (D.corner 3);
|
||||
\draw[1cell] (D.corner 3) -- (D.corner 4);
|
||||
\draw[1cell] (E.corner 2) -- (E.corner 3);
|
||||
\draw[1cell] (E.corner 3) -- (E.corner 4);
|
||||
\draw[1cell] (E.corner 4) -- (E.corner 5);
|
||||
\draw[1cell] (F.corner 3) -- (F.corner 4);
|
||||
\draw[1cell] (F.corner 4) -- (F.corner 5);
|
||||
\draw[1cell] (F.corner 5) -- (F.corner 6);
|
||||
\draw[1cell] (G.corner 4) -- (G.corner 5);
|
||||
\draw[1cell] (G.corner 5) -- (G.corner 6);
|
||||
\draw[1cell] (G.corner 6) -- (G.corner 1);
|
||||
\draw[1cell] (B.corner 5) -- (B.corner 6);
|
||||
\draw[1cell] (B.corner 6) -- (B.corner 1);
|
||||
\draw[1cell] (B.corner 1) -- (B.corner 2);
|
||||
\draw[1cell] (C.corner 6) -- (C.corner 1);
|
||||
\draw[1cell] (C.corner 1) -- (C.corner 2);
|
||||
\draw[1cell] (C.corner 2) -- (C.corner 3);
|
||||
|
||||
\node[0cell] (g1) at (G.corner 1) {};
|
||||
\node[0cell] (b2) at (B.corner 2) {};
|
||||
\node[0cell] (c3) at (C.corner 3) {};
|
||||
\node[0cell] (d4) at (D.corner 4) {};
|
||||
\node[0cell] (e5) at (E.corner 5) {};
|
||||
\node[0cell] (f6) at (F.corner 6) {};
|
||||
|
||||
\node[0cell] (c1) at (C.corner 1) {};
|
||||
\node[0cell] (c2) at (C.corner 2) {};
|
||||
\node[0cell] (d2) at (D.corner 2) {};
|
||||
\node[0cell] (d3) at (D.corner 3) {};
|
||||
\node[0cell] (e3) at (E.corner 3) {};
|
||||
\node[0cell] (e4) at (E.corner 4) {};
|
||||
\node[0cell] (f4) at (F.corner 4) {};
|
||||
\node[0cell] (f5) at (F.corner 5) {};
|
||||
\node[0cell] (g5) at (G.corner 5) {};
|
||||
\node[0cell] (g6) at (G.corner 6) {};
|
||||
\node[0cell] (b6) at (B.corner 6) {};
|
||||
\node[0cell] (b1) at (B.corner 1) {};
|
||||
\end{scope}
|
||||
\end{tikzpicture}
|
||||
\end{document}
|
||||
26
figures/operateursS.tikz
Normal file
26
figures/operateursS.tikz
Normal file
|
|
@ -0,0 +1,26 @@
|
|||
\documentclass{standalone}
|
||||
\input{common-headers}
|
||||
\input{sigles}
|
||||
\begin{document}
|
||||
\begin{tikzpicture}
|
||||
\input{operateurs}
|
||||
|
||||
\draw[1cell] (A.corner 1) -- (A.corner 2);
|
||||
\draw[1cell] (A.corner 2) -- (A.corner 3);
|
||||
\draw[1cell] (A.corner 3) -- (A.corner 4);
|
||||
\draw[1cell] (A.corner 4) -- (A.corner 5);
|
||||
\draw[1cell] (A.corner 5) -- (A.corner 6);
|
||||
\draw[1cell] (A.corner 6) -- (A.corner 1);
|
||||
|
||||
\begin{scope}[0cell/.style={circle, inner sep=0, minimum width=5pt,
|
||||
fill = black!20, draw = white, thick}]
|
||||
\node[0cell] (a1) at (A.corner 1) {};
|
||||
\node[0cell] (a2) at (A.corner 2) {};
|
||||
\node[0cell] (a3) at (A.corner 3) {};
|
||||
\node[0cell] (a4) at (A.corner 4) {};
|
||||
\node[0cell] (a5) at (A.corner 5) {};
|
||||
\node[0cell] (a6) at (A.corner 6) {};
|
||||
\end{scope}
|
||||
\end{scope}
|
||||
\end{tikzpicture}
|
||||
\end{document}
|
||||
35
figures/operateursStS.tikz
Normal file
35
figures/operateursStS.tikz
Normal file
|
|
@ -0,0 +1,35 @@
|
|||
\documentclass{standalone}
|
||||
\input{common-headers}
|
||||
\input{sigles}
|
||||
\begin{document}
|
||||
% étoile de S
|
||||
\begin{tikzpicture}
|
||||
\input{operateurs}
|
||||
|
||||
\node[2cell] (a) at (A) {};
|
||||
\node[2cell] (b) at (B) {};
|
||||
\node[2cell] (c) at (C) {};
|
||||
\node[2cell] (d) at (D) {};
|
||||
\node[2cell] (e) at (E) {};
|
||||
\node[2cell] (f) at (F) {};
|
||||
\node[2cell] (g) at (G) {};
|
||||
|
||||
\draw[1cell] (A.corner 1) -- (A.corner 2);
|
||||
\draw[1cell] (A.corner 2) -- (A.corner 3);
|
||||
\draw[1cell] (A.corner 3) -- (A.corner 4);
|
||||
\draw[1cell] (A.corner 4) -- (A.corner 5);
|
||||
\draw[1cell] (A.corner 5) -- (A.corner 6);
|
||||
\draw[1cell] (A.corner 6) -- (A.corner 1);
|
||||
|
||||
\begin{scope}[0cell/.style={circle, inner sep=0, minimum width=5pt,
|
||||
fill = black!20, draw = white, thick}]
|
||||
\node[0cell] (a1) at (A.corner 1) {};
|
||||
\node[0cell] (a2) at (A.corner 2) {};
|
||||
\node[0cell] (a3) at (A.corner 3) {};
|
||||
\node[0cell] (a4) at (A.corner 4) {};
|
||||
\node[0cell] (a5) at (A.corner 5) {};
|
||||
\node[0cell] (a6) at (A.corner 6) {};
|
||||
\end{scope}
|
||||
\end{scope}
|
||||
\end{tikzpicture}
|
||||
\end{document}
|
||||
49
figures/operateursStfS.tikz
Normal file
49
figures/operateursStfS.tikz
Normal file
|
|
@ -0,0 +1,49 @@
|
|||
\documentclass{standalone}
|
||||
\input{common-headers}
|
||||
\input{sigles}
|
||||
\begin{document}
|
||||
% Étoile fermeture de S
|
||||
\begin{tikzpicture}
|
||||
\input{operateurs}
|
||||
|
||||
\node[2cell] (a) at (A) {};
|
||||
\node[2cell] (b) at (B) {};
|
||||
\node[2cell] (c) at (C) {};
|
||||
\node[2cell] (d) at (D) {};
|
||||
\node[2cell] (e) at (E) {};
|
||||
\node[2cell] (f) at (F) {};
|
||||
\node[2cell] (g) at (G) {};
|
||||
|
||||
\draw[1cell] (A.corner 1) -- (A.corner 2);
|
||||
\draw[1cell] (A.corner 2) -- (A.corner 3);
|
||||
\draw[1cell] (A.corner 3) -- (A.corner 4);
|
||||
\draw[1cell] (A.corner 4) -- (A.corner 5);
|
||||
\draw[1cell] (A.corner 5) -- (A.corner 6);
|
||||
\draw[1cell] (A.corner 6) -- (A.corner 1);
|
||||
|
||||
\draw[1cell] (A.corner 1) -- (B.corner 2);
|
||||
\draw[1cell] (A.corner 2) -- (C.corner 3);
|
||||
\draw[1cell] (A.corner 3) -- (D.corner 4);
|
||||
\draw[1cell] (A.corner 4) -- (E.corner 5);
|
||||
\draw[1cell] (A.corner 5) -- (F.corner 6);
|
||||
\draw[1cell] (A.corner 6) -- (G.corner 1);
|
||||
|
||||
\node[0cell] (a1) at (A.corner 1) {};
|
||||
\node[0cell] (a2) at (A.corner 2) {};
|
||||
\node[0cell] (a3) at (A.corner 3) {};
|
||||
\node[0cell] (a4) at (A.corner 4) {};
|
||||
\node[0cell] (a5) at (A.corner 5) {};
|
||||
\node[0cell] (a6) at (A.corner 6) {};
|
||||
|
||||
\begin{scope}[0cell/.style={circle, inner sep=0, minimum width=5pt,
|
||||
fill = black!20, draw = white, thick}]
|
||||
\node[0cell] (g1) at (G.corner 1) {};
|
||||
\node[0cell] (b2) at (B.corner 2) {};
|
||||
\node[0cell] (c3) at (C.corner 3) {};
|
||||
\node[0cell] (d4) at (D.corner 4) {};
|
||||
\node[0cell] (e5) at (E.corner 5) {};
|
||||
\node[0cell] (f6) at (F.corner 6) {};
|
||||
\end{scope}
|
||||
\end{scope}
|
||||
\end{tikzpicture}
|
||||
\end{document}
|
||||
24
figures/operateursfS.tikz
Normal file
24
figures/operateursfS.tikz
Normal file
|
|
@ -0,0 +1,24 @@
|
|||
\documentclass{standalone}
|
||||
\input{common-headers}
|
||||
\input{sigles}
|
||||
\begin{document}
|
||||
% Fermeture de S (pareil)
|
||||
\begin{tikzpicture}
|
||||
\input{operateurs}
|
||||
|
||||
\draw[1cell] (A.corner 1) -- (A.corner 2);
|
||||
\draw[1cell] (A.corner 2) -- (A.corner 3);
|
||||
\draw[1cell] (A.corner 3) -- (A.corner 4);
|
||||
\draw[1cell] (A.corner 4) -- (A.corner 5);
|
||||
\draw[1cell] (A.corner 5) -- (A.corner 6);
|
||||
\draw[1cell] (A.corner 6) -- (A.corner 1);
|
||||
|
||||
\node[0cell] (a1) at (A.corner 1) {};
|
||||
\node[0cell] (a2) at (A.corner 2) {};
|
||||
\node[0cell] (a3) at (A.corner 3) {};
|
||||
\node[0cell] (a4) at (A.corner 4) {};
|
||||
\node[0cell] (a5) at (A.corner 5) {};
|
||||
\node[0cell] (a6) at (A.corner 6) {};
|
||||
\end{scope}
|
||||
\end{tikzpicture}
|
||||
\end{document}
|
||||
78
figures/operateursfStS.tikz
Normal file
78
figures/operateursfStS.tikz
Normal file
|
|
@ -0,0 +1,78 @@
|
|||
\documentclass{standalone}
|
||||
\input{common-headers}
|
||||
\input{sigles}
|
||||
\begin{document}
|
||||
% fermeture de étoile S
|
||||
\begin{tikzpicture}
|
||||
\input{operateurs}
|
||||
|
||||
\node[2cell] (a) at (A) {};
|
||||
\node[2cell] (b) at (B) {};
|
||||
\node[2cell] (c) at (C) {};
|
||||
\node[2cell] (d) at (D) {};
|
||||
\node[2cell] (e) at (E) {};
|
||||
\node[2cell] (f) at (F) {};
|
||||
\node[2cell] (g) at (G) {};
|
||||
|
||||
\draw[1cell] (A.corner 1) -- (A.corner 2);
|
||||
\draw[1cell] (A.corner 2) -- (A.corner 3);
|
||||
\draw[1cell] (A.corner 3) -- (A.corner 4);
|
||||
\draw[1cell] (A.corner 4) -- (A.corner 5);
|
||||
\draw[1cell] (A.corner 5) -- (A.corner 6);
|
||||
\draw[1cell] (A.corner 6) -- (A.corner 1);
|
||||
|
||||
\draw[1cell] (A.corner 1) -- (B.corner 2);
|
||||
\draw[1cell] (A.corner 2) -- (C.corner 3);
|
||||
\draw[1cell] (A.corner 3) -- (D.corner 4);
|
||||
\draw[1cell] (A.corner 4) -- (E.corner 5);
|
||||
\draw[1cell] (A.corner 5) -- (F.corner 6);
|
||||
\draw[1cell] (A.corner 6) -- (G.corner 1);
|
||||
|
||||
\draw[1cell] (D.corner 1) -- (D.corner 2);
|
||||
\draw[1cell] (D.corner 2) -- (D.corner 3);
|
||||
\draw[1cell] (D.corner 3) -- (D.corner 4);
|
||||
\draw[1cell] (E.corner 2) -- (E.corner 3);
|
||||
\draw[1cell] (E.corner 3) -- (E.corner 4);
|
||||
\draw[1cell] (E.corner 4) -- (E.corner 5);
|
||||
\draw[1cell] (F.corner 3) -- (F.corner 4);
|
||||
\draw[1cell] (F.corner 4) -- (F.corner 5);
|
||||
\draw[1cell] (F.corner 5) -- (F.corner 6);
|
||||
\draw[1cell] (G.corner 4) -- (G.corner 5);
|
||||
\draw[1cell] (G.corner 5) -- (G.corner 6);
|
||||
\draw[1cell] (G.corner 6) -- (G.corner 1);
|
||||
\draw[1cell] (B.corner 5) -- (B.corner 6);
|
||||
\draw[1cell] (B.corner 6) -- (B.corner 1);
|
||||
\draw[1cell] (B.corner 1) -- (B.corner 2);
|
||||
\draw[1cell] (C.corner 6) -- (C.corner 1);
|
||||
\draw[1cell] (C.corner 1) -- (C.corner 2);
|
||||
\draw[1cell] (C.corner 2) -- (C.corner 3);
|
||||
|
||||
\node[0cell] (a1) at (A.corner 1) {};
|
||||
\node[0cell] (a2) at (A.corner 2) {};
|
||||
\node[0cell] (a3) at (A.corner 3) {};
|
||||
\node[0cell] (a4) at (A.corner 4) {};
|
||||
\node[0cell] (a5) at (A.corner 5) {};
|
||||
\node[0cell] (a6) at (A.corner 6) {};
|
||||
|
||||
\node[0cell] (g1) at (G.corner 1) {};
|
||||
\node[0cell] (b2) at (B.corner 2) {};
|
||||
\node[0cell] (c3) at (C.corner 3) {};
|
||||
\node[0cell] (d4) at (D.corner 4) {};
|
||||
\node[0cell] (e5) at (E.corner 5) {};
|
||||
\node[0cell] (f6) at (F.corner 6) {};
|
||||
|
||||
\node[0cell] (c1) at (C.corner 1) {};
|
||||
\node[0cell] (c2) at (C.corner 2) {};
|
||||
\node[0cell] (d2) at (D.corner 2) {};
|
||||
\node[0cell] (d3) at (D.corner 3) {};
|
||||
\node[0cell] (e3) at (E.corner 3) {};
|
||||
\node[0cell] (e4) at (E.corner 4) {};
|
||||
\node[0cell] (f4) at (F.corner 4) {};
|
||||
\node[0cell] (f5) at (F.corner 5) {};
|
||||
\node[0cell] (g5) at (G.corner 5) {};
|
||||
\node[0cell] (g6) at (G.corner 6) {};
|
||||
\node[0cell] (b6) at (B.corner 6) {};
|
||||
\node[0cell] (b1) at (B.corner 1) {};
|
||||
\end{scope}
|
||||
\end{tikzpicture}
|
||||
\end{document}
|
||||
BIN
figures/otb-concentric-bact.png
Normal file
BIN
figures/otb-concentric-bact.png
Normal file
Binary file not shown.
|
After Width: | Height: | Size: 414 KiB |
BIN
figures/otb-concentric-boundingbox.png
Normal file
BIN
figures/otb-concentric-boundingbox.png
Normal file
Binary file not shown.
|
After Width: | Height: | Size: 183 KiB |
BIN
figures/otb-concentric-morpho.png
Normal file
BIN
figures/otb-concentric-morpho.png
Normal file
Binary file not shown.
|
After Width: | Height: | Size: 247 KiB |
BIN
figures/otb-multi-view.pdf
Normal file
BIN
figures/otb-multi-view.pdf
Normal file
Binary file not shown.
BIN
figures/otb2-display.png
Normal file
BIN
figures/otb2-display.png
Normal file
Binary file not shown.
|
After Width: | Height: | Size: 1.5 MiB |
49
figures/otbModules.tikz
Normal file
49
figures/otbModules.tikz
Normal file
|
|
@ -0,0 +1,49 @@
|
|||
\documentclass{standalone}
|
||||
\input{common-headers}
|
||||
\input{sigles}
|
||||
\begin{document}
|
||||
\begin{tikzpicture}[node distance=4cm,
|
||||
normalNodes/.style={inner sep=10pt,outer sep=2pt,minimum width=2.5cm},
|
||||
main/.style={normalNodes,draw=black},
|
||||
high/.style={normalNodes,draw=black,fill=black!20},
|
||||
low/.style= {normalNodes,draw=black,fill=black!40},
|
||||
regTo/.style={-Stealth,thick},
|
||||
mainTo/.style={-Stealth,thick}]
|
||||
\node (Main) [main] {\texttt{Main}};
|
||||
\node (Morphogen) [high,below of=Main, xshift=-2cm] {\texttt{Morphogen}};
|
||||
\node (Bacterium) [high,left of=Morphogen] {\texttt{Bacterium}};
|
||||
\node (Zone) [high,right of=Morphogen] {\texttt{Zone}};
|
||||
\node (Coupling) [high,right of=Zone] {\texttt{Coupling}};
|
||||
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|
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|
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at (barycentric cs:Morphogen=1,Bacterium=1) {};
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|
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|
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|
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|
||||
%
|
||||
|
||||
\end{tikzpicture}
|
||||
\end{document}
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22
figures/plot-ff.tikz
Normal file
22
figures/plot-ff.tikz
Normal file
|
|
@ -0,0 +1,22 @@
|
|||
\documentclass{standalone}
|
||||
\input{common-headers}
|
||||
\input{sigles}
|
||||
\begin{document}
|
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\begin{tikzpicture}
|
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|
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\begin{axis}[%
|
||||
xlabel=Itérations
|
||||
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|
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,ylabel=Quantité normalisée
|
||||
,ymin=0,ymax=1.1
|
||||
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|
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|
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|
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|
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|
||||
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|
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|
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Executable file
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figures/s.png
Executable file
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|
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23
figures/schema-lv.tikz
Normal file
23
figures/schema-lv.tikz
Normal file
|
|
@ -0,0 +1,23 @@
|
|||
\documentclass[crop,tikz]{standalone}
|
||||
\input{common-headers}
|
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|
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\begin{document}
|
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|
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|
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|
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|
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|
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|
||||
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|
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|
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BIN
figures/sectors-original.png
Normal file
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BIN
figures/sectors.png
Normal file
BIN
figures/sectors.png
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Binary file not shown.
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17
figures/stablePopulation.tikz
Normal file
17
figures/stablePopulation.tikz
Normal file
|
|
@ -0,0 +1,17 @@
|
|||
\documentclass{standalone}
|
||||
\input{common-headers}
|
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\input{sigles}
|
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\begin{document}
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\begin{tikzpicture}
|
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|
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|
||||
xlabel=Itérations
|
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% ,scale only axis
|
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,ylabel=Nombre de bactéries
|
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% ,ymin=0,ymax=1.1
|
||||
% ,xmin=0,xmax=1000
|
||||
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|
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|
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|
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\end{document}
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figures/system-bounce.png
Normal file
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139
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After Width: | Height: | Size: 23 KiB |
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