pandoc/data/jats.csl
John MacFarlane 9dd2eefded JATS writer: fix citations with PMID so they validate.
Closes #5481. This includes an update to data/jats.csl.
2019-05-04 08:45:43 -07:00

203 lines
9.3 KiB
XML

<?xml version="1.0" encoding="utf-8"?>
<style xmlns="http://purl.org/net/xbiblio/csl" class="in-text" version="1.0" default-locale="en-US">
<info>
<title>Journal Article Tag Suite</title>
<title-short>JATS</title-short>
<id>http://www.zotero.org/styles/journal-article-tag-suite</id>
<link href="https://github.com/MartinPaulEve/JATS-CSL/blob/master/jats.csl" rel="self"/>
<link rel="documentation" href="http://jats.nlm.nih.gov/archiving/tag-library/1.0/index.html"/>
<author>
<name>Martin Paul Eve</name>
<email>martin@martineve.com</email>
</author>
<category citation-format="numeric"/>
<category field="medicine"/>
<category field="biology"/>
<summary>Use this style to generate bibliographic data in Journal Article Tagging Suite (JATS) 1.0 XML format</summary>
<updated>2014-06-21T17:41:26+00:00</updated>
<rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License. Originally by Martin Fenner.</rights>
</info>
<locale xml:lang="en">
<terms>
<term name="et-al">{{jats}}&lt;etal/&gt;{{/jats}}</term>
</terms>
</locale>
<macro name="citation-number">
<text variable="citation-number" prefix="{{jats}}id=&quot;ref-{{/jats}}" suffix="{{jats}}&quot;&gt;{{/jats}}"/>
</macro>
<macro name="author">
<names variable="author" delimiter=" ">
<name prefix="{{jats}}&lt;name&gt;{{/jats}}" suffix="{{jats}}&lt;/name&gt;{{/jats}}" name-as-sort-order="all" sort-separator=" ">
<name-part name="family" text-case="capitalize-first" prefix="{{jats}}&lt;surname&gt;{{/jats}}" suffix="{{jats}}&lt;/surname&gt;{{/jats}}"/>
<name-part name="given" text-case="capitalize-first" prefix="{{jats}}&lt;given-names&gt;{{/jats}}" suffix="{{jats}}&lt;/given-names&gt;{{/jats}}"/>
</name>
<substitute>
<names variable="editor"/>
</substitute>
</names>
</macro>
<macro name="editor">
<names variable="editor" prefix="{{jats}}&lt;person-group person-group-type=&quot;editor&quot;&gt;{{/jats}}" suffix="{{jats}}&lt;/person-group&gt;{{/jats}}">
<name prefix="{{jats}}&lt;name&gt;{{/jats}}" suffix="{{jats}}&lt;/name&gt;{{/jats}}" name-as-sort-order="all" sort-separator="">
<name-part name="family" text-case="capitalize-first" prefix="{{jats}}&lt;surname&gt;{{/jats}}" suffix="{{jats}}&lt;/surname&gt;{{/jats}}"/>
<name-part name="given" text-case="capitalize-first" prefix="{{jats}}&lt;given-names&gt;{{/jats}}" suffix="{{jats}}&lt;/given-names&gt;{{/jats}}"/>
</name>
<substitute>
<names variable="editor"/>
</substitute>
</names>
</macro>
<macro name="editor">
<group delimiter=": ">
<names variable="editor">
<name prefix="{{jats}}&lt;name&gt;{{/jats}}" suffix="{{jats}}&lt;/name&gt;{{/jats}}" name-as-sort-order="all" sort-separator="">
<name-part name="family" text-case="capitalize-first" prefix="{{jats}}&lt;surname&gt;{{/jats}}" suffix="{{jats}}&lt;/surname&gt;{{/jats}}"/>
<name-part name="given" text-case="capitalize-first" prefix="{{jats}}&lt;given-names&gt;{{/jats}}" suffix="{{jats}}&lt;given-names&gt;{{/jats}}"/>
</name>
</names>
</group>
</macro>
<macro name="title">
<choose>
<if type="book" match="any">
<group prefix="{{jats}}&lt;source&gt;{{/jats}}" suffix="{{jats}}&lt;/source&gt;{{/jats}}">
<text variable="title"/>
</group>
</if>
<else>
<group prefix="{{jats}}&lt;article-title&gt;{{/jats}}" suffix="{{jats}}&lt;/article-title&gt;{{/jats}}">
<text variable="title"/>
</group>
</else>
</choose>
</macro>
<macro name="container-title">
<text variable="container-title" form="short" prefix="{{jats}}&lt;source&gt;{{/jats}}" suffix="{{jats}}&lt;/source&gt;{{/jats}}"/>
</macro>
<macro name="publisher">
<text variable="publisher" prefix="{{jats}}&lt;publisher-name&gt;{{/jats}}" suffix="{{jats}}&lt;/publisher-name&gt;{{/jats}}"/>
<text variable="publisher-place" prefix="{{jats}}&lt;publisher-loc&gt;{{/jats}}" suffix="{{jats}}&lt;/publisher-loc&gt;{{/jats}}"/>
</macro>
<macro name="link">
<choose>
<if match="any" variable="DOI">
<group prefix="{{jats}}&lt;pub-id pub-id-type=&quot;doi&quot;&gt;{{/jats}}" suffix="{{jats}}&lt;/pub-id&gt;{{/jats}}">
<text variable="DOI"/>
</group>
</if>
</choose>
<choose>
<if match="any" variable="PMID">
<group prefix="{{jats}}&lt;pub-id pub-id-type=&quot;pmid&quot;&gt;{{/jats}}" suffix="{{jats}}&lt;/pub-id&gt;{{/jats}}">
<text variable="PMID"/>
</group>
</if>
</choose>
<choose>
<if variable="URL" match="any">
<text variable="URL" />
</if>
</choose>
</macro>
<macro name="date">
<choose>
<if type="article-journal article-magazine article-newspaper report patent book" match="any">
<group prefix="{{jats}}&lt;date&gt;{{/jats}}" suffix="{{jats}}&lt;/date&gt;{{/jats}}">
<date variable="issued">
<date-part name="day" form="numeric-leading-zeros" prefix="{{jats}}&lt;day&gt;{{/jats}}" suffix="{{jats}}&lt;/day&gt;{{/jats}}"/>
<date-part name="month" form="numeric-leading-zeros" prefix="{{jats}}&lt;month&gt;{{/jats}}" suffix="{{jats}}&lt;/month&gt;{{/jats}}"/>
<date-part name="year" prefix="{{jats}}&lt;year&gt;{{/jats}}" suffix="{{jats}}&lt;/year&gt;{{/jats}}"/>
</date>
</group>
</if>
<else>
<group prefix="{{jats}}&lt;date-in-citation content-type=&quot;access-date&quot;{{/jats}}" suffix="{{jats}}&lt;/date-in-citation&gt;{{/jats}}">
<date variable="accessed" prefix="{{jats}} iso-8601-date=&quot;{{/jats}}" suffix="{{jats}}&quot;&gt;{{/jats}}">
<date-part name="year"/>
<date-part name="month" form="numeric-leading-zeros" prefix="{{jats}}-{{/jats}}"/>
<date-part name="day" form="numeric-leading-zeros" prefix="{{jats}}-{{/jats}}"/>
</date>
<date variable="accessed">
<date-part name="day" prefix="{{jats}}&lt;day&gt;{{/jats}}" suffix="{{jats}}&lt;/day&gt;{{/jats}}"/>
<date-part name="month" form="numeric-leading-zeros" prefix="{{jats}}&lt;month&gt;{{/jats}}" suffix="{{jats}}&lt;/month&gt;{{/jats}}"/>
<date-part name="year" prefix="{{jats}}&lt;year&gt;{{/jats}}" suffix="{{jats}}&lt;/year&gt;{{/jats}}"/>
</date>
</group>
</else>
</choose>
</macro>
<macro name="location">
<choose>
<if type="article-journal article-magazine" match="any">
<text variable="volume" prefix="{{jats}}&lt;volume&gt;{{/jats}}" suffix="{{jats}}&lt;/volume&gt;{{/jats}}"/>
<text variable="issue" prefix="{{jats}}&lt;issue&gt;{{/jats}}" suffix="{{jats}}&lt;/issue&gt;{{/jats}}"/>
</if>
</choose>
<choose>
<if type="article-journal article-magazine article-newspaper chapter" match="any">
<text variable="page-first" prefix="{{jats}}&lt;fpage&gt;{{/jats}}" suffix="{{jats}}&lt;/fpage&gt;{{/jats}}"/>
</if>
</choose>
</macro>
<macro name="publication-type">
<group prefix="{{jats}} publication-type=&quot;{{/jats}}" suffix="{{jats}}&quot;&gt;{{/jats}}">
<choose>
<if type="article-journal article-magazine article-newspaper" match="any">
<text value="journal"/>
</if>
<else-if type="book" match="any">
<text value="book"/>
</else-if>
<else-if type="chapter" match="any">
<text value="bookchapter"/>
</else-if>
<else-if type="dataset" match="any">
<text value="dataset"/>
</else-if>
<else-if type="patent" match="any">
<text value="patent"/>
</else-if>
<else-if type="report" match="any">
<text value="report"/>
</else-if>
<else-if type="review" match="any">
<text value="review"/>
</else-if>
<else>
<text value="standard"/>
</else>
</choose>
</group>
</macro>
<citation collapse="citation-number">
<sort>
<key variable="citation-number"/>
</sort>
<layout delimiter=",">
<group prefix="{{jats}}&lt;xref ref-type=&quot;bibr&quot; rid=&quot;{{/jats}}" suffix="{{jats}}&lt;/xref&gt;{{/jats}}">
<text variable="citation-number" prefix="{{jats}}ref-{{/jats}}" suffix="{{jats}}&quot;&gt;{{/jats}}"/>
<text variable="citation-number"/>
</group>
</layout>
</citation>
<bibliography sort-separator="">
<layout>
<group prefix="{{jats}}&lt;ref {{/jats}}" suffix="{{jats}}&lt;/ref&gt;{{/jats}}">
<text macro="citation-number"/>
<group prefix="{{jats}}&lt;element-citation{{/jats}}" suffix="{{jats}}&lt;/element-citation&gt;{{/jats}}">
<text macro="publication-type"/>
<text macro="author" prefix="{{jats}}&lt;person-group person-group-type=&quot;author&quot;&gt;{{/jats}}" suffix="{{jats}}&lt;/person-group&gt;{{/jats}}"/>
<text macro="title" />
<text macro="container-title"/>
<text macro="editor"/>
<text macro="publisher"/>
<text macro="date"/>
<text macro="location"/>
<text macro="link"/>
</group>
</group>
</layout>
</bibliography>
</style>