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16 commits

Author SHA1 Message Date
Castedo Ellerman
e7269beeb6
Follow JATS4R recommendation and PudMed Central (#8041)
Using the default jats template of pandoc 2.18, the https://jats4r.org/jats4r-validator/ warns: "The license URI is given in `@xlink:href`. For JATS 1.1d3 and later, if the license is defined by a canonical URI, then it should be specified in the `<ali:license_ref>` child element."

I can confirm that what JATS4R recommends here is consistent with the JATS article packages found on the FTP site for the
PubMed Central Open Access Subset <https://www.ncbi.nlm.nih.gov/pmc/tools/openftlist/> (at least with the eLife article I looked at).

This proposed change follows the JATS4R recommendation and an example eLife article on the PubMed Central FTP site.
2022-06-22 10:17:24 -07:00
Albert Krewinkel
843eeae13d
JATS template: include particles, prefix, suffix in names 2022-05-01 13:02:53 +02:00
Albert Krewinkel
3f354ce4b8
JATS template: unconditionally include permissions element
Fixes a bug that caused license information to be omitted when no copyright
information was provided.

Fixes: #8040
2022-04-26 17:48:27 +02:00
Albert Krewinkel
dbc80c1a6b
JATS template: allow multiple licenses to be given.
The `license` metadata field can now be used to set the license of an
article; a list can be used to add multiple license statements.
2022-04-04 10:05:32 +02:00
Albert Krewinkel
c694a6e4f5
JATS template: allow multiple copyright statements, years, holders 2022-04-02 15:29:37 +02:00
Albert Krewinkel
ddd1b85608
JATS templates: fix affiliation tagging in articleauthoring output
Affiliations were `xlink`ed even in the articleauthoring tag set, but
`<aff>` are not allowed as children of `contrib-group` elements in that
tag set. Each affiliation must be listed directly in the contrib
element.
2021-12-23 09:11:54 +01:00
Albert Krewinkel
7954070b01
JATS templates: add support for article subtitles 2021-12-23 09:11:54 +01:00
Albert Krewinkel
fe113dd5fa
JATS template: fix incomplete previous commit 2021-11-11 09:44:49 +01:00
Albert Krewinkel
b116022de4
JATS template: fix equal-contrib attribute
The standard requires the value to be either `yes` or `no`, but is was
set to `true` for authors who contributed equally.
2021-11-11 09:38:07 +01:00
Albert Krewinkel
872b4313a1
JATS templates: support 'equal-contrib' attrib for authors
Authors who contributed equally to a paper may be marked with
`equal-contrib`.
2021-03-11 11:07:59 +01:00
Albert Krewinkel
b5b576184c
JATS writer: add date-type to pub-date elements 2021-02-15 13:15:14 +01:00
Albert Krewinkel
2c99e0e358
JATS writer: replace attribute "pub-type" with "publication-format".
The former attribute is deprecated.
2021-02-15 13:15:14 +01:00
Albert Krewinkel
d82fe52a02
JATS templates: tag author.name as string-name
The partitioning the components of a name into surname, given names,
etc. is not always possible or not available. Using `author.name` allows
to give the full name as a fallback to be used when `author.surname` is
not available.
2021-01-29 09:51:20 +01:00
Albert Krewinkel
797db8d306
JATS writer: support author affiliations (#6867)
Closes: #6687
2020-11-20 09:57:06 -08:00
Albert Krewinkel
7af608b214
JATS templates: ensure jats_publishing output is valid 2020-10-31 15:20:30 +01:00
Albert Krewinkel
f5ea5f0aad
Introduce new format variants for JATS (#6067)
New formats:

- `jats_archiving` for the "Archiving and Interchange Tag Set",
- `jats_publishing` for the "Journal Publishing Tag Set", and
- `jats_articleauthoring` for the "Article Authoring Tag Set."

The "jats" output format is now an alias for "jats_archiving".

Closes: #6014
2020-02-12 20:36:02 -08:00
Renamed from data/templates/default.jats (Browse further)