JATS writer: use either styled-content or named-content for spans.

If the element has a content-type attribute, or at least one class, then
that value is used as `content-type` and the span is put inside a
`<named-content>` element. Otherwise a `<styled-content>` element is
used instead.

Closes: #7211

src/Text/Pandoc/Writers/JATS.hs

@@ -21,12 +21,13 @@ module Text.Pandoc.Writers.JATS
   , writeJatsPublishing
   , writeJatsArticleAuthoring
   ) where
+import Control.Applicative ((<|>))
 import Control.Monad.Reader
 import Control.Monad.State
 import Data.Generics (everywhere, mkT)
 import Data.List (partition)
 import qualified Data.Map as M
-import Data.Maybe (fromMaybe)
+import Data.Maybe (fromMaybe, listToMaybe)
 import Data.Time (toGregorian, Day, parseTimeM, defaultTimeLocale, formatTime)
 import qualified Data.Text as T
 import Data.Text (Text)
@@ -449,18 +450,33 @@ inlineToJATS opts (Note contents) = do
              $ text (show notenum)
 inlineToJATS opts (Cite _ lst) =
   inlinesToJATS opts lst
-inlineToJATS opts (Span (ident,_,kvs) ils) = do
+inlineToJATS opts (Span (ident,classes,kvs) ils) = do
   contents <- inlinesToJATS opts ils
-  let attr = [("id", escapeNCName ident) | not (T.null ident)] ++
+  let commonAttr = [("id", escapeNCName ident) | not (T.null ident)] ++
                    [("xml:lang",l) | ("lang",l) <- kvs] ++
-             [(k,v) | (k,v) <- kvs
+                   [(k,v) | (k,v) <- kvs,  k `elem` ["alt", "specific-use"]]
-                    ,  k `elem` ["alt", "content-type", "rid", "specific-use",
+  -- A named-content element is a good fit for spans, but requires a
-                                 "vocab", "vocab-identifier", "vocab-term",
+  -- content-type attribute to be present. We use either the explicit
-                                 "vocab-term-identifier"]]
+  -- attribute or the first class as content type. If neither is
+  -- available, then we fall back to using a @styled-content@ element.
+  let (tag, specificAttr) =
+        case lookup "content-type" kvs <|> listToMaybe classes of
+          Just ct -> ( "named-content"
+                     , ("content-type", ct) :
+                       [(k, v) | (k, v) <- kvs
+                       , k `elem` ["rid", "vocab", "vocab-identifier",
+                                   "vocab-term", "vocab-term-identifier"]])
+          -- Fall back to styled-content
+          Nothing -> ("styled-content"
+                     , [(k, v) | (k,v) <- kvs
+                       , k `elem` ["style", "style-type", "style-detail",
+                                   "toggle"]])
+  let attr = commonAttr ++ specificAttr
+  -- unwrap if wrapping element would have no attributes
   return $
     if null attr
-    then contents  -- unwrap if no relevant attributes are given
+    then contents
-    else inTags False "named-content" attr contents
+    else inTags False tag attr contents
 inlineToJATS _ (Math t str) = do
   let addPref (Xml.Attr q v)
          | Xml.qName q == "xmlns" = Xml.Attr q{ Xml.qName = "xmlns:mml" } v

test/Tests/Writers/JATS.hs

@@ -148,13 +148,17 @@ tests =
       spanWith nullAttr "text in span" =?>
       "<p>text in span</p>"
 
-    , "converted to named-content element" =:
+    , "converted to named-content element if class given" =:
-      spanWith ("a", ["ignored"], [("alt", "aa")]) "text" =?>
+      spanWith ("a", ["genus-species"], [("alt", "aa")]) "C. elegans" =?>
-      "<p><named-content id=\"a\" alt=\"aa\">text</named-content></p>"
+      ("<p><named-content id=\"a\" alt=\"aa\" content-type=\"genus-species\">"
+       <> "C. elegans</named-content></p>")
 
-    , "unwrapped if named-content element would have no attributes" =:
+    , "unwrapped if styled-content element would have no attributes" =:
-      spanWith ("", ["ignored"], [("hidden", "true")]) "text in span" =?>
+      spanWith ("", [], [("hidden", "true")]) "text in span" =?>
       "<p>text in span</p>"
 
+    , "use content-type attribute if present" =:
+      spanWith ("", [], [("content-type", "species")]) "E. coli" =?>
+      "<p><named-content content-type=\"species\">E. coli</named-content></p>"
     ]
   ]